Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

189572 .. 190204

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgggggagagccacaacaacctccaccaccgcgcaacaacatcgtcctccgttgcttctcgattgggtttagggataaggactgcttcttcctccactgccagcgaaattgaccgccacagcaaggtctgtacaaccaaaagccccacagaccgccgcgtctgcgtcgccgcccacaccgccattcaattctacgatgtgcaggactggctaggatacgactggctcagcaaggccgtcgattggctcatcaagaaatccaaggccgcaatcgacaagctcgacgagctgccgctgtggaaccggaactcaatttctattcaaacaacatcttctccgacagtgccgatattcgctgcacaggacaagcaaaacgcgagcctccatttctcgatggtggaggctccgagttctttgtctactaataggcgaggcgcaatggtggctagcagtagagtggcaaagttggtgaatcagaacagctcgaattttctgcaggtgaggatggtgtggaggccgaagttgttaatctttgtctgcctacaattgcctctgatcaaagttgggatagaggtcgaagttgtcggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

196

Amino Acids

21.65

Weight (kDa)

9.71

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	419
AccII	CGCG	3 cut(s)	33, 159, 377
AciI	CCGC	8 cut(s)	31, 115, 154, 157, 171, 180, 267, 293
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	124, 243
AgsI	TTSAA	2 cut(s)	188, 323
AluBI	AGCT	3 cut(s)	280, 289, 483
AluI	AGCT	3 cut(s)	280, 289, 483
AoxI	GGCC	3 cut(s)	234, 264, 515
ApeKI	GCWGC	2 cut(s)	289, 356
ApoI	RAATTY	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	35, 437
AsuHPI	GGTGA	2 cut(s)	481, 511
AsuNHI	GCTAGC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	276, 343
BccI	CCATC	2 cut(s)	388, 499
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	6 cut(s)	24, 58, 220, 254, 475, 509
BciVI	GTATCC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	555
BfaI	CTAG	3 cut(s)	212, 447, 589
BfmI	CTRYAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	6 cut(s)	157, 171, 267, 290, 293, 357
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	6 cut(s)	158, 172, 268, 291, 294, 358
BmiI	GGNNCC	2 cut(s)	302, 405
BmtI	GCTAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 243
Bse1I	ACTGG	2 cut(s)	212, 227
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	124, 243
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	212, 227
BseXI	GCAGC	2 cut(s)	276, 343
BsgI	GTGCAG	2 cut(s)	221, 342
Bsh1236I	CGCG	3 cut(s)	33, 159, 377
BshFI	GGCC	3 cut(s)	236, 266, 517
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	124, 243
BsnI	GGCC	3 cut(s)	236, 266, 517
Bsp1407I	TGTACA	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	555
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	8 cut(s)	31, 115, 154, 157, 171, 180, 267, 293
BspANI	GGCC	3 cut(s)	236, 266, 517
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	3 cut(s)	33, 159, 377
BspLI	GGNNCC	2 cut(s)	302, 405
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	487
BspOI	GCTAGC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	212, 227
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	343
BstAUI	TGTACA	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	103, 379, 448
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	510
BstFNI	CGCG	3 cut(s)	33, 159, 377
BstHHI	GCGC	2 cut(s)	35, 437
BstKTI	GATC	1 cut(s)	558
BstMBI	GATC	1 cut(s)	555
BstMWI	GCNNNNNNNGC	5 cut(s)	162, 179, 208, 286, 443
BstSFI	CTRYAG	1 cut(s)	494
BstUI	CGCG	3 cut(s)	33, 159, 377
BstV1I	GCAGC	2 cut(s)	276, 343
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	236, 266, 517
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 348
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	103, 379, 448
CfoI	GCGC	2 cut(s)	35, 437
CseI	GACGC	2 cut(s)	148, 154
Csp6I	GTAC	1 cut(s)	132
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	557
DpnII	GATC	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FbaI	TGATCA	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	6 cut(s)	157, 171, 267, 290, 293, 357
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	6 cut(s)	157, 171, 267, 290, 293, 357
FspBI	CTAG	3 cut(s)	212, 447, 589
GlaI	GCGC	2 cut(s)	34, 436
GluI	GCNGC	6 cut(s)	157, 171, 267, 290, 293, 357
HaeIII	GGCC	3 cut(s)	236, 266, 517
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	2 cut(s)	148, 154
HhaI	GCGC	2 cut(s)	35, 437
Hin6I	GCGC	2 cut(s)	33, 435
HinP1I	GCGC	2 cut(s)	33, 435
HinfI	GANTC	1 cut(s)	472
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	2 cut(s)	481, 511
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	339, 408, 477, 555
Hpy188III	TCNNGA	3 cut(s)	60, 253, 391
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	3 cut(s)	170, 242, 287
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	202, 359, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	162, 179, 208, 286, 443
HpyF3I	CTNAG	1 cut(s)	227
HspAI	GCGC	2 cut(s)	33, 435
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	555
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	7 cut(s)	115, 188, 193, 208, 317, 347, 482
Lsp1109I	GCAGC	2 cut(s)	276, 343
MaeI	CTAG	3 cut(s)	212, 447, 589
MalI	GATC	1 cut(s)	557
MboI	GATC	1 cut(s)	555
MboII	GAAGA	2 cut(s)	81, 324
MfeI	CAATTG	1 cut(s)	545
MluCI	AATT	5 cut(s)	108, 188, 312, 487, 545
MmeI	TCCRAC	1 cut(s)	362
MseI	TTAA	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	1 cut(s)	304
MunI	CAATTG	1 cut(s)	545
MvnI	CGCG	3 cut(s)	33, 159, 377
MwoI	GCNNNNNNNGC	5 cut(s)	162, 179, 208, 286, 443
NdeII	GATC	1 cut(s)	555
NheI	GCTAGC	1 cut(s)	446
NlaIV	GGNNCC	2 cut(s)	302, 405
PaqCI	CACCTGC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	6 cut(s)	158, 172, 268, 291, 294, 358
PspN4I	GGNNCC	2 cut(s)	302, 405
PstI	CTGCAG	1 cut(s)	498
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	6 cut(s)	157, 171, 267, 290, 293, 357
Sau3AI	GATC	1 cut(s)	555
SetI	ASST	7 cut(s)	24, 129, 282, 291, 485, 501, 576
SfcI	CTRYAG	1 cut(s)	494
Sse9I	AATT	5 cut(s)	108, 188, 312, 487, 545
SsiI	CCGC	8 cut(s)	31, 115, 154, 157, 171, 180, 267, 293
SspMI	CTAG	3 cut(s)	212, 447, 589
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	7 cut(s)	61, 240, 273, 282, 392, 485, 576
TasI	AATT	5 cut(s)	108, 188, 312, 487, 545
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	4 cut(s)	159, 173, 269, 295
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TscAI	CASTG	2 cut(s)	103, 348
TseI	GCWGC	2 cut(s)	289, 356
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	103, 348
XapI	RAATTY	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	3 cut(s)	212, 447, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.