Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TCP | PF03634 | 44 - 141 | 7.5e-32 | TCP family transcription factor |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 950 |
| AccB1I | GGYRCC | 1 cut(s) | 48 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 965 |
| AccI | GTMKAC | 1 cut(s) | 125 |
| AccII | CGCG | 1 cut(s) | 186 |
| AclWI | GGATC | 2 cut(s) | 1021, 1037 |
| AcoI | YGGCCR | 1 cut(s) | 967 |
| AcsI | RAATTY | 2 cut(s) | 836, 1154 |
| AcuI | CTGAAG | 2 cut(s) | 431, 989 |
| AcvI | CACGTG | 1 cut(s) | 176 |
| AcyI | GRCGYC | 1 cut(s) | 947 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 270, 572, 965, 1136, 1201 |
| AgeI | ACCGGT | 1 cut(s) | 1108 |
| AgsI | TTSAA | 5 cut(s) | 42, 230, 466, 582, 942 |
| AhlI | ACTAGT | 1 cut(s) | 856 |
| AjnI | CCWGG | 1 cut(s) | 323 |
| AluBI | AGCT | 5 cut(s) | 307, 316, 445, 542, 982 |
| AluI | AGCT | 5 cut(s) | 307, 316, 445, 542, 982 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 5 cut(s) | 184, 411, 686, 847, 1223 |
| AlwI | GGATC | 2 cut(s) | 1021, 1037 |
| AoxI | GGCC | 3 cut(s) | 170, 967, 1192 |
| ApeKI | GCWGC | 5 cut(s) | 81, 356, 688, 823, 1207 |
| ApoI | RAATTY | 2 cut(s) | 836, 1154 |
| AsiGI | ACCGGT | 1 cut(s) | 1108 |
| AspLEI | GCGC | 1 cut(s) | 186 |
| AspS9I | GGNCC | 4 cut(s) | 170, 707, 998, 1192 |
| AsuC2I | CCSGG | 2 cut(s) | 701, 1131 |
| AsuHPI | GGTGA | 8 cut(s) | 14, 580, 728, 1040, 1049, 1088, 1106, 1163 |
| AsuII | TTCGAA | 1 cut(s) | 596 |
| AvaII | GGWCC | 2 cut(s) | 707, 998 |
| AxyI | CCTNAGG | 1 cut(s) | 1147 |
| BalI | TGGCCA | 1 cut(s) | 969 |
| BanI | GGYRCC | 1 cut(s) | 48 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbrPI | CACGTG | 1 cut(s) | 176 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BbvI | GCAGC | 5 cut(s) | 68, 343, 675, 835, 1219 |
| BccI | CCATC | 5 cut(s) | 27, 698, 1059, 1073, 1101 |
| BceAI | ACGGC | 6 cut(s) | 91, 177, 222, 248, 502, 1216 |
| BciT130I | CCWGG | 1 cut(s) | 325 |
| BcnI | CCSGG | 2 cut(s) | 701, 1131 |
| BcoDI | GTCTC | 5 cut(s) | 184, 411, 686, 847, 1223 |
| BcuI | ACTAGT | 1 cut(s) | 856 |
| BfaI | CTAG | 3 cut(s) | 255, 350, 857 |
| BglII | AGATCT | 1 cut(s) | 673 |
| BlpI | GCTNAGC | 1 cut(s) | 312 |
| Bme1390I | CCNGG | 3 cut(s) | 325, 701, 1131 |
| Bme18I | GGWCC | 2 cut(s) | 707, 998 |
| BmgT120I | GGNCC | 4 cut(s) | 170, 707, 998, 1192 |
| BmiI | GGNNCC | 4 cut(s) | 50, 591, 999, 1000 |
| BmrFI | CCNGG | 3 cut(s) | 325, 701, 1131 |
| BmsI | GCATC | 4 cut(s) | 55, 328, 493, 640 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 312 |
| Bpu14I | TTCGAA | 1 cut(s) | 596 |
| BpuMI | CCSGG | 2 cut(s) | 701, 1131 |
| BsaAI | YACGTR | 1 cut(s) | 176 |
| BsaHI | GRCGYC | 1 cut(s) | 947 |
| BsaI | GGTCTC | 1 cut(s) | 1223 |
| BsaJI | CCNNGG | 2 cut(s) | 323, 1129 |
| BsaWI | WCCGGW | 3 cut(s) | 128, 565, 1108 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 574, 604, 812, 842 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 270, 572, 965, 1136, 1201 |
| Bse118I | RCCGGY | 2 cut(s) | 180, 1108 |
| Bse1I | ACTGG | 2 cut(s) | 959, 1011 |
| Bse21I | CCTNAGG | 1 cut(s) | 1147 |
| BseBI | CCWGG | 1 cut(s) | 325 |
| BseDI | CCNNGG | 2 cut(s) | 323, 1129 |
| BseGI | GGATG | 4 cut(s) | 70, 484, 631, 709 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 270, 572, 965, 1136, 1201 |
| BseMII | CTCAG | 3 cut(s) | 303, 1004, 1161 |
| BseNI | ACTGG | 2 cut(s) | 959, 1011 |
| BseRI | GAGGAG | 5 cut(s) | 486, 489, 918, 924, 1217 |
| BseXI | GCAGC | 5 cut(s) | 68, 343, 675, 835, 1219 |
| BsgI | GTGCAG | 2 cut(s) | 142, 707 |
| Bsh1236I | CGCG | 1 cut(s) | 186 |
| Bsh1285I | CGRYCG | 1 cut(s) | 250 |
| BshFI | GGCC | 3 cut(s) | 172, 969, 1194 |
| BshNI | GGYRCC | 1 cut(s) | 48 |
| BshTI | ACCGGT | 1 cut(s) | 1108 |
| BsiEI | CGRYCG | 1 cut(s) | 250 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 7 cut(s) | 129, 181, 566, 638, 701, 1109, 1131 |
| BslFI | GGGAC | 2 cut(s) | 984, 1005 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 270, 572, 965, 1136, 1201 |
| BsmAI | GTCTC | 5 cut(s) | 184, 411, 686, 847, 1223 |
| BsmBI | CGTCTC | 2 cut(s) | 411, 686 |
| BsmFI | GGGAC | 2 cut(s) | 984, 1005 |
| BsnI | GGCC | 3 cut(s) | 172, 969, 1194 |
| Bso31I | GGTCTC | 1 cut(s) | 1223 |
| Bsp119I | TTCGAA | 1 cut(s) | 596 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp143I | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 312 |
| BspANI | GGCC | 3 cut(s) | 172, 969, 1194 |
| BspCNI | CTCAG | 3 cut(s) | 304, 1003, 1160 |
| BspFNI | CGCG | 1 cut(s) | 186 |
| BspLI | GGNNCC | 4 cut(s) | 50, 591, 999, 1000 |
| BspPI | GGATC | 2 cut(s) | 1021, 1037 |
| BspQI | GCTCTTC | 1 cut(s) | 583 |
| BspT104I | TTCGAA | 1 cut(s) | 596 |
| BspT107I | GGYRCC | 1 cut(s) | 48 |
| BspTNI | GGTCTC | 1 cut(s) | 1223 |
| BsrFI | RCCGGY | 2 cut(s) | 180, 1108 |
| BsrI | ACTGG | 2 cut(s) | 959, 1011 |
| BssAI | RCCGGY | 2 cut(s) | 180, 1108 |
| BssECI | CCNNGG | 2 cut(s) | 323, 1129 |
| BssMI | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| BssNI | GRCGYC | 1 cut(s) | 947 |
| Bst2UI | CCWGG | 1 cut(s) | 325 |
| Bst4CI | ACNGT | 5 cut(s) | 53, 714, 1019, 1185, 1217 |
| Bst6I | CTCTTC | 3 cut(s) | 583, 1165, 1194 |
| BstACI | GRCGYC | 1 cut(s) | 947 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 156 |
| BstBAI | YACGTR | 1 cut(s) | 176 |
| BstBI | TTCGAA | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 1 cut(s) | 309 |
| BstDEI | CTNAG | 4 cut(s) | 288, 312, 990, 1147 |
| BstF5I | GGATG | 4 cut(s) | 70, 484, 631, 709 |
| BstFNI | CGCG | 1 cut(s) | 186 |
| BstHHI | GCGC | 1 cut(s) | 186 |
| BstKTI | GATC | 4 cut(s) | 676, 1029, 1045, 1081 |
| BstMAI | GTCTC | 5 cut(s) | 184, 411, 686, 847, 1223 |
| BstMBI | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| BstMCI | CGRYCG | 1 cut(s) | 250 |
| BstNI | CCWGG | 1 cut(s) | 325 |
| BstSCI | CCNGG | 3 cut(s) | 323, 699, 1129 |
| BstUI | CGCG | 1 cut(s) | 186 |
| BstV1I | GCAGC | 5 cut(s) | 68, 343, 675, 835, 1219 |
| BstX2I | RGATCY | 1 cut(s) | 673 |
| BstYI | RGATCY | 1 cut(s) | 673 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1147 |
| BsuRI | GGCC | 3 cut(s) | 172, 969, 1194 |
| BtsCI | GGATG | 4 cut(s) | 70, 484, 631, 709 |
| Cac8I | GCNNGC | 1 cut(s) | 309 |
| CfoI | GCGC | 1 cut(s) | 186 |
| Cfr10I | RCCGGY | 2 cut(s) | 180, 1108 |
| Cfr13I | GGNCC | 4 cut(s) | 170, 707, 998, 1192 |
| CspAI | ACCGGT | 1 cut(s) | 1108 |
| CviAII | CATG | 1 cut(s) | 1024 |
| DdeI | CTNAG | 4 cut(s) | 288, 312, 990, 1147 |
| DpnI | GATC | 4 cut(s) | 675, 1028, 1044, 1080 |
| DpnII | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| EaeI | YGGCCR | 1 cut(s) | 967 |
| Eam1104I | CTCTTC | 3 cut(s) | 583, 1165, 1194 |
| EarI | CTCTTC | 3 cut(s) | 583, 1165, 1194 |
| EciI | GGCGGA | 5 cut(s) | 86, 399, 624, 745, 900 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 1223 |
| Eco47I | GGWCC | 2 cut(s) | 707, 998 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 2 cut(s) | 431, 989 |
| Eco72I | CACGTG | 1 cut(s) | 176 |
| Eco81I | CCTNAGG | 1 cut(s) | 1147 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoO109I | RGGNCCY | 1 cut(s) | 998 |
| EcoRI | GAATTC | 2 cut(s) | 836, 1154 |
| EcoRII | CCWGG | 1 cut(s) | 323 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| Esp3I | CGTCTC | 2 cut(s) | 411, 686 |
| FaeI | CATG | 1 cut(s) | 1027 |
| FaiI | YATR | 5 cut(s) | 551, 603, 611, 1025, 1175 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 222, 254 |
| FaqI | GGGAC | 2 cut(s) | 984, 1005 |
| FatI | CATG | 1 cut(s) | 1023 |
| FauI | CCCGC | 3 cut(s) | 33, 340, 522 |
| FblI | GTMKAC | 1 cut(s) | 125 |
| FokI | GGATG | 4 cut(s) | 77, 471, 618, 716 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 3 cut(s) | 255, 350, 857 |
| GlaI | GCGC | 1 cut(s) | 185 |
| HaeIII | GGCC | 3 cut(s) | 172, 969, 1194 |
| HapII | CCGG | 7 cut(s) | 129, 181, 566, 638, 701, 1109, 1131 |
| HhaI | GCGC | 1 cut(s) | 186 |
| Hin1I | GRCGYC | 1 cut(s) | 947 |
| Hin1II | CATG | 1 cut(s) | 1027 |
| Hin6I | GCGC | 1 cut(s) | 184 |
| HinP1I | GCGC | 1 cut(s) | 184 |
| HpaII | CCGG | 7 cut(s) | 129, 181, 566, 638, 701, 1109, 1131 |
| HphI | GGTGA | 8 cut(s) | 14, 580, 728, 1040, 1049, 1088, 1106, 1163 |
| Hpy166II | GTNNAC | 3 cut(s) | 126, 710, 1114 |
| Hpy188III | TCNNGA | 2 cut(s) | 230, 651 |
| Hpy8I | GTNNAC | 3 cut(s) | 126, 710, 1114 |
| Hpy99I | CGWCG | 7 cut(s) | 64, 718, 835, 949, 952, 1079, 1217 |
| HpyAV | CCTTC | 6 cut(s) | 45, 603, 837, 948, 1013, 1109 |
| HpyCH4III | ACNGT | 5 cut(s) | 53, 714, 1019, 1185, 1217 |
| HpyCH4IV | ACGT | 3 cut(s) | 59, 175, 947 |
| HpyCH4V | TGCA | 6 cut(s) | 103, 159, 341, 613, 691, 724 |
| HpyF3I | CTNAG | 4 cut(s) | 288, 312, 990, 1147 |
| HpySE526I | ACGT | 3 cut(s) | 59, 175, 947 |
| Hsp92I | GRCGYC | 1 cut(s) | 947 |
| Hsp92II | CATG | 1 cut(s) | 1027 |
| HspAI | GCGC | 1 cut(s) | 184 |
| KflI | GGGWCCC | 1 cut(s) | 998 |
| Kzo9I | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| LguI | GCTCTTC | 1 cut(s) | 583 |
| LmnI | GCTCC | 6 cut(s) | 476, 595, 820, 887, 931, 1204 |
| Lsp1109I | GCAGC | 5 cut(s) | 68, 343, 675, 835, 1219 |
| LweI | GCATC | 4 cut(s) | 55, 328, 493, 640 |
| MaeI | CTAG | 3 cut(s) | 255, 350, 857 |
| MaeII | ACGT | 3 cut(s) | 59, 175, 947 |
| MaeIII | GTNAC | 4 cut(s) | 110, 176, 491, 1013 |
| MalI | GATC | 4 cut(s) | 675, 1028, 1044, 1080 |
| MboI | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| MboII | GAAGA | 6 cut(s) | 30, 144, 387, 570, 1152, 1211 |
| MflI | RGATCY | 1 cut(s) | 673 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MlsI | TGGCCA | 1 cut(s) | 969 |
| MluCI | AATT | 4 cut(s) | 14, 342, 836, 1154 |
| MluNI | TGGCCA | 1 cut(s) | 969 |
| MlyI | GAGTC | 2 cut(s) | 186, 509 |
| MmeI | TCCRAC | 2 cut(s) | 42, 813 |
| Mox20I | TGGCCA | 1 cut(s) | 969 |
| MscI | TGGCCA | 1 cut(s) | 969 |
| Msp20I | TGGCCA | 1 cut(s) | 969 |
| MspA1I | CMGCKG | 2 cut(s) | 356, 873 |
| MspI | CCGG | 7 cut(s) | 129, 181, 566, 638, 701, 1109, 1131 |
| MspR9I | CCNGG | 3 cut(s) | 325, 701, 1131 |
| MvaI | CCWGG | 1 cut(s) | 325 |
| MvnI | CGCG | 1 cut(s) | 186 |
| NciI | CCSGG | 2 cut(s) | 701, 1131 |
| NdeII | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| NlaIII | CATG | 1 cut(s) | 1027 |
| NlaIV | GGNNCC | 4 cut(s) | 50, 591, 999, 1000 |
| NmuCI | GTSAC | 2 cut(s) | 110, 176 |
| NspV | TTCGAA | 1 cut(s) | 596 |
| PciSI | GCTCTTC | 1 cut(s) | 583 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 692 |
| PfeI | GAWTC | 8 cut(s) | 211, 328, 527, 533, 598, 847, 1134, 1140 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 965 |
| PfoI | TCCNGGA | 1 cut(s) | 699 |
| PinAI | ACCGGT | 1 cut(s) | 1108 |
| PleI | GAGTC | 2 cut(s) | 186, 508 |
| PmaCI | CACGTG | 1 cut(s) | 176 |
| PmlI | CACGTG | 1 cut(s) | 176 |
| PpsI | GAGTC | 2 cut(s) | 186, 508 |
| Ppu21I | YACGTR | 1 cut(s) | 176 |
| PpuMI | RGGWCCY | 1 cut(s) | 998 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| Psp5II | RGGWCCY | 1 cut(s) | 998 |
| Psp6I | CCWGG | 1 cut(s) | 323 |
| PspCI | CACGTG | 1 cut(s) | 176 |
| PspGI | CCWGG | 1 cut(s) | 323 |
| PspN4I | GGNNCC | 4 cut(s) | 50, 591, 999, 1000 |
| PspPI | GGNCC | 4 cut(s) | 170, 707, 998, 1192 |
| PspPPI | RGGWCCY | 1 cut(s) | 998 |
| PsuI | RGATCY | 1 cut(s) | 673 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SapI | GCTCTTC | 1 cut(s) | 583 |
| Sau3AI | GATC | 4 cut(s) | 673, 1026, 1042, 1078 |
| Sau96I | GGNCC | 4 cut(s) | 170, 707, 998, 1192 |
| SchI | GAGTC | 2 cut(s) | 186, 509 |
| ScrFI | CCNGG | 3 cut(s) | 325, 701, 1131 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SfaNI | GCATC | 4 cut(s) | 55, 328, 493, 640 |
| SfuI | TTCGAA | 1 cut(s) | 596 |
| SinI | GGWCC | 2 cut(s) | 707, 998 |
| SpeI | ACTAGT | 1 cut(s) | 856 |
| Sse9I | AATT | 4 cut(s) | 14, 342, 836, 1154 |
| SspMI | CTAG | 3 cut(s) | 255, 350, 857 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| StyD4I | CCNGG | 3 cut(s) | 323, 699, 1129 |
| TaaI | ACNGT | 5 cut(s) | 53, 714, 1019, 1185, 1217 |
| TaiI | ACGT | 3 cut(s) | 62, 178, 950 |
| TaqI | TCGA | 6 cut(s) | 246, 503, 536, 596, 652, 812 |
| TaqII | GACCGA | 2 cut(s) | 111, 264 |
| TasI | AATT | 4 cut(s) | 14, 342, 836, 1154 |
| TauI | GCSGC | 8 cut(s) | 31, 71, 81, 87, 356, 421, 876, 885 |
| TfiI | GAWTC | 8 cut(s) | 211, 328, 527, 533, 598, 847, 1134, 1140 |
| TseFI | GTSAC | 2 cut(s) | 110, 176 |
| TseI | GCWGC | 5 cut(s) | 81, 356, 688, 823, 1207 |
| Tsp45I | GTSAC | 2 cut(s) | 110, 176 |
| TspGWI | ACGGA | 8 cut(s) | 393, 483, 599, 668, 783, 795, 921, 1019 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 965 |
| VpaK11BI | GGWCC | 2 cut(s) | 707, 998 |
| XapI | RAATTY | 2 cut(s) | 836, 1154 |
| XmiI | GTMKAC | 1 cut(s) | 125 |
| XspI | CTAG | 3 cut(s) | 255, 350, 857 |
| ZraI | GACGTC | 1 cut(s) | 948 |