Rroxscaffold_5G00377440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000293
Physical Location & Seq
Forward (+)
58001814 .. 58017973
16160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377440.1

Sequence Viewer

Length: 582 bp
ATGGTAGTTGATAAAGCGATTCGAGAGAATGATTTTATGTTTGAATGCTTCAAAAGAAAGAAAAAGTCAAAAGTGCAAGGTTTCAAAAGAATAAGTGTGGGGAAAATAAGCAGAGTTGCGGAAACGAGAGAAAATGACACAAATTTGAAGCAAATTGGAGTGTTCGACAAAAGGACGATGTGGTCAATATCGGTGAACTGTGGTCTACAACACGAAGGGAATTCAAATCATCTTGCTCGTCCGATTCCCACCGCCGCTGCGTCTCGATCCACCTTCATGCACCACGGATGTTTCGGTTCCCCCAACTTCAAATCCTATAGCAAATTGAAATTGTGCATTGAGGCTTCACCCACACACTCCGAGTTCATCCCCGCCGCCGTCGCCAATGACTTGACCACAACAACCTCCACCACCGCACAACAACGTCATCCTCTGCTTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCGCTAGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACGGCGGAAGGACAGCCACGGCAAGGTTTGCACCACCAAAGGCCCCGGGGATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

10.25

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 205
AciI CCGC 8 cut(s) 119, 252, 255, 372, 375, 414, 483, 530
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 2 cut(s) 142, 220
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 7 cut(s) 44, 52, 85, 148, 225, 310, 328
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 2 cut(s) 504, 570
AoxI GGCC 3 cut(s) 508, 522, 566
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 142, 220
AspS9I GGNCC 2 cut(s) 522, 567
AsuC2I CCSGG 2 cut(s) 571, 572
AsuHPI GGTGA 2 cut(s) 205, 339
AsuNHI GCTAGC 1 cut(s) 485
AvaI CYCGRG 2 cut(s) 504, 570
BbvI GCAGC 1 cut(s) 244
BceAI ACGGC 3 cut(s) 362, 543, 560
BcnI CCSGG 2 cut(s) 571, 572
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 316
BisI GCNGC 3 cut(s) 255, 258, 375
BlsI GCNGC 3 cut(s) 256, 259, 376
Bme1390I CCNGG 2 cut(s) 571, 572
BmeT110I CYCGRG 2 cut(s) 504, 570
BmgT120I GGNCC 2 cut(s) 522, 567
BmiI GGNNCC 2 cut(s) 298, 569
BmrFI CCNGG 2 cut(s) 571, 572
BmtI GCTAGC 1 cut(s) 489
BpuMI CCSGG 2 cut(s) 571, 572
BsaJI CCNNGG 6 cut(s) 283, 525, 542, 569, 570, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 548
BseDI CCNNGG 6 cut(s) 283, 525, 542, 569, 570, 571
BseGI GGATG 3 cut(s) 293, 366, 427
BseLI CCNNNNNNNGG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 3 cut(s) 510, 524, 568
BsiHKCI CYCGRG 2 cut(s) 504, 570
BsiSI CCGG 1 cut(s) 571
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 3 cut(s) 510, 524, 568
BsoBI CYCGRG 2 cut(s) 504, 570
Bsp143I GATC 2 cut(s) 266, 575
BspACI CCGC 8 cut(s) 119, 252, 255, 372, 375, 414, 483, 530
BspANI GGCC 3 cut(s) 510, 524, 568
BspLI GGNNCC 2 cut(s) 298, 569
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 1 cut(s) 261
BssECI CCNNGG 6 cut(s) 283, 525, 542, 569, 570, 571
BssMI GATC 2 cut(s) 266, 575
Bst4CI ACNGT 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 438, 487
BstDEI CTNAG 1 cut(s) 518
BstDSI CCRYGG 3 cut(s) 283, 525, 542
BstF5I GGATG 3 cut(s) 293, 366, 427
BstKTI GATC 2 cut(s) 269, 578
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 266, 575
BstMWI GCNNNNNNNGC 2 cut(s) 380, 553
BstSCI CCNGG 2 cut(s) 569, 570
BstSFI CTRYAG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 3 cut(s) 510, 524, 568
BtgI CCRYGG 3 cut(s) 283, 525, 542
BtsCI GGATG 3 cut(s) 293, 366, 427
Cac8I GCNNGC 2 cut(s) 438, 487
Cfr13I GGNCC 2 cut(s) 522, 567
Cfr9I CCCGGG 1 cut(s) 570
CseI GACGC 1 cut(s) 249
CviAII CATG 1 cut(s) 277
CviJI RGCY 6 cut(s) 344, 503, 510, 524, 541, 568
CviKI_1 RGCY 6 cut(s) 344, 503, 510, 524, 541, 568
DdeI CTNAG 1 cut(s) 518
DpnI GATC 2 cut(s) 268, 577
DpnII GATC 2 cut(s) 266, 575
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EciI GGCGGA 1 cut(s) 545
Eco88I CYCGRG 2 cut(s) 504, 570
EcoO109I RGGNCCY 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 1 cut(s) 280
FaiI YATR 3 cut(s) 38, 278, 318
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FatI CATG 1 cut(s) 276
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 255, 258, 375
FokI GGATG 3 cut(s) 300, 353, 414
Fsp4HI GCNGC 3 cut(s) 255, 258, 375
FspBI CTAG 1 cut(s) 486
GluI GCNGC 3 cut(s) 255, 258, 375
HaeIII GGCC 3 cut(s) 510, 524, 568
HapII CCGG 1 cut(s) 571
HgaI GACGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 280
HinfI GANTC 2 cut(s) 19, 244
HpaII CCGG 1 cut(s) 571
HphI GGTGA 2 cut(s) 205, 339
Hpy166II GTNNAC 2 cut(s) 196, 206
Hpy188I TCNGA 2 cut(s) 243, 361
Hpy188III TCNNGA 3 cut(s) 23, 264, 444
Hpy8I GTNNAC 2 cut(s) 196, 206
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 209, 283, 527
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 4 cut(s) 76, 280, 336, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 553
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 2 cut(s) 266, 575
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 424
MalI GATC 2 cut(s) 268, 577
MboI GATC 2 cut(s) 266, 575
MboII GAAGA 1 cut(s) 465
MluCI AATT 5 cut(s) 142, 153, 220, 323, 329
MnlI CCTC 6 cut(s) 334, 415, 441, 487, 493, 500
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 571, 572
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 380, 553
NciI CCSGG 2 cut(s) 571, 572
NdeII GATC 2 cut(s) 266, 575
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 298, 569
PaeR7I CTCGAG 1 cut(s) 504
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 19, 244
PkrI GCNGC 3 cut(s) 256, 259, 376
PspN4I GGNNCC 2 cut(s) 298, 569
PspPI GGNCC 2 cut(s) 522, 567
PspXI VCTCGAGB 1 cut(s) 504
RseI CAYNNNNRTG 1 cut(s) 275
SatI GCNGC 3 cut(s) 255, 258, 375
Sau3AI GATC 2 cut(s) 266, 575
Sau96I GGNCC 2 cut(s) 522, 567
ScrFI CCNGG 2 cut(s) 571, 572
SetI ASST 5 cut(s) 82, 275, 407, 427, 553
SfcI CTRYAG 1 cut(s) 316
Sfr274I CTCGAG 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 504
SmaI CCCGGG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 5 cut(s) 142, 153, 220, 323, 329
SsiI CCGC 8 cut(s) 119, 252, 255, 372, 375, 414, 483, 530
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 569, 570
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 427
TaqI TCGA 5 cut(s) 22, 165, 265, 445, 505
TasI AATT 5 cut(s) 142, 153, 220, 323, 329
TauI GCSGC 2 cut(s) 257, 377
TfiI GAWTC 2 cut(s) 19, 244
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 265, 355
TspGWI ACGGA 1 cut(s) 300
TspMI CCCGGG 1 cut(s) 570
XapI RAATTY 2 cut(s) 142, 220
XhoI CTCGAG 1 cut(s) 504
XmaI CCCGGG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 205
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.