Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

26193632 .. 26194951

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G020060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGGGGAGAGCCACAGCAACCTCCACCACCAAGCAACGACGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCACCAGCGAGATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGGCCGCAAGGACCGCCACAGCAAGGTGCAGACCGCCAAAGGCCCCAGGGACCGCCGCGTCCGGCTGGCCGCGCACACCGCCATTCAATTCTACGACGTGCAGGACCGGCTCGGATACGACCGGCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAAGCCAAGGCCGCAATAGACGAGCTCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCCGACGGTGCCGATATCCGCGGCTCAGGACACGCAGAACGCGAGCCTCCATTTCTCGATGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGGCGAGGCGCAATGGTGGGTAGCAGCGGAGTGGCGGAGCTGGTGAATCAGAACAGCTCGAATTTTCTGCCGCCGTCGATGGACTCGGACTCAATTGCAGATACTATCAAGTCTTTCTTCCCAATGGGTGCGGCGACGGCGGCCGAAACGCAGTCGTTTCACCCCGCCAGCTACCCGCCGGATTTGCTGTCCAGAACCAGCAGCCAGAGCCAAGATCTGCGACTGTCTCTCCAGTCTTTCCAAGACCCAATTCTTCTCCACCACCACCACCAAGCTCATCATCATCATCATCATCATCATCAGACCCATCACGAAAATGAGCAAGCTTTTCTTACACCAAACCATCTCGGGTTTGATAGCTCCGCCTCCACGTGGACAGAGCACCACCACCAACAGCAGCAGCAGCAGCAGGCGGAGCTCAGCAGGTTCCAGAGAATGGTGGCTTGGAACAATGCGGGTGGTGATAGCAACAACAACAACAGCAGCGGTGATGGAGTTGAGTTTACGTTCAACTCGCAACCGCAGACTCAATCGCAGTCGCCGACTCTGCAGCCGATCTTGTTCGGCCAAAACCAGTTCTTTTCTTCACAGAGGGGACCCCTTCAGTCCAGTAACACGCCTTCGGTTCATGCCTGGATCGACCACAGCGACCTTTCGGACCATCAACATCAGATGGCGCCGTCAATCCATAACCACCACCATCATCATCATCAACAGTCTTCCATTTCCGGCATGGGATTCGCCTCCGGCGGATTCTCCGGCTTCCAAATTCCGGCACGAATCCAGGGCGAGGAGGAGCACGACGGCATCTCAGACAAGCCGTCCTCTGCTTCCTCCAATTCTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

439

Amino Acids

48.22

Weight (kDa)

6.5

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	49 - 244	3.6e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	882
AccB1I	GGYRCC	2 cut(s)	385, 1144
AccB7I	CCANNNNNTGG	1 cut(s)	904
AccII	CGCG	4 cut(s)	201, 215, 398, 419
AclWI	GGATC	1 cut(s)	1112
AcoI	YGGCCR	4 cut(s)	145, 210, 609, 1033
AcsI	RAATTY	2 cut(s)	529, 1236
AcuI	CTGAAG	1 cut(s)	1055
AcvI	CACGTG	1 cut(s)	840
AcyI	GRCGYC	2 cut(s)	41, 1145
AfiI	CCNNNNNNNGG	6 cut(s)	166, 285, 840, 904, 1240, 1258
AgsI	TTSAA	2 cut(s)	230, 979
AhdI	GACNNNNNGTC	1 cut(s)	1288
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	188, 1100, 1251
AjuI	GAANNNNNNNTTGG	4 cut(s)	702, 734, 895, 927
AluBI	AGCT	9 cut(s)	322, 331, 508, 525, 639, 743, 794, 828, 886
AluI	AGCT	9 cut(s)	322, 331, 508, 525, 639, 743, 794, 828, 886
Alw21I	GWGCWC	4 cut(s)	324, 852, 888, 1269
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	1112
Ama87I	CYCGRG	2 cut(s)	120, 815
ApoI	RAATTY	2 cut(s)	529, 1236
AspLEI	GCGC	3 cut(s)	217, 479, 1147
AspS9I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1064, 1126
AsuHPI	GGTGA	4 cut(s)	523, 620, 941, 968
AvaI	CYCGRG	2 cut(s)	120, 815
AvaII	GGWCC	5 cut(s)	154, 193, 247, 1064, 1126
BanI	GGYRCC	2 cut(s)	385, 1144
BanII	GRGCYC	2 cut(s)	324, 888
BarI	GAAGNNNNNNTAC	2 cut(s)	1072, 1104
BbrPI	CACGTG	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	1179
Bbv12I	GWGCWC	4 cut(s)	324, 852, 888, 1269
BccI	CCATC	8 cut(s)	430, 541, 783, 819, 953, 1135, 1137, 1176
BceAI	ACGGC	7 cut(s)	263, 322, 526, 621, 1132, 1273, 1288
BcgI	CGANNNNNNTGC	8 cut(s)	24, 58, 262, 296, 517, 551, 1189, 1223
BciT130I	CCWGG	3 cut(s)	190, 1102, 1253
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	1016
BfoI	RGCGCY	1 cut(s)	1148
BfuAI	ACCTGC	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	251
BglII	AGATCT	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	887
Bme1390I	CCNGG	3 cut(s)	190, 1102, 1253
Bme18I	GGWCC	5 cut(s)	154, 193, 247, 1064, 1126
BmeRI	GACNNNNNGTC	1 cut(s)	1288
BmeT110I	CYCGRG	2 cut(s)	120, 815
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1064, 1126
BmiI	GGNNCC	9 cut(s)	187, 194, 344, 387, 447, 896, 1065, 1066, 1146
BmrFI	CCNGG	3 cut(s)	190, 1102, 1253
BmsI	GCATC	1 cut(s)	1284
BpiI	GAAGAC	1 cut(s)	1179
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	887
BsaAI	YACGTR	1 cut(s)	840
BsaHI	GRCGYC	2 cut(s)	41, 1145
BsaJI	CCNNGG	6 cut(s)	188, 189, 303, 338, 396, 1252
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 681, 711
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 285, 840, 904, 1240, 1258
Bse118I	RCCGGY	3 cut(s)	143, 249, 264
Bse1I	ACTGG	3 cut(s)	700, 1042, 1077
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	3 cut(s)	190, 1102, 1253
BseDI	CCNNGG	6 cut(s)	188, 189, 303, 338, 396, 1252
BseLI	CCNNNNNNNGG	6 cut(s)	166, 285, 840, 904, 1240, 1258
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	416, 901, 1293
BseNI	ACTGG	3 cut(s)	700, 1042, 1077
BseRI	GAGGAG	2 cut(s)	1274, 1277
BseX3I	CGGCCG	2 cut(s)	145, 609
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	2 cut(s)	191, 263
Bsh1236I	CGCG	4 cut(s)	201, 215, 398, 419
Bsh1285I	CGRYCG	3 cut(s)	148, 265, 612
BshNI	GGYRCC	2 cut(s)	385, 1144
BsiEI	CGRYCG	3 cut(s)	148, 265, 612
BsiHKAI	GWGCWC	4 cut(s)	324, 852, 888, 1269
BsiHKCI	CYCGRG	2 cut(s)	120, 815
BsiSI	CCGG	9 cut(s)	144, 205, 250, 265, 647, 1197, 1215, 1227, 1241
BslFI	GGGAC	2 cut(s)	206, 1077
BslI	CCNNNNNNNGG	6 cut(s)	166, 285, 840, 904, 1240, 1258
BsmAI	GTCTC	1 cut(s)	699
BsmFI	GGGAC	2 cut(s)	206, 1077
BsoBI	CYCGRG	2 cut(s)	120, 815
Bsp1286I	GDGCHC	4 cut(s)	324, 852, 888, 1269
Bsp143I	GATC	4 cut(s)	108, 682, 1023, 1104
Bsp1720I	GCTNAGC	1 cut(s)	887
BspCNI	CTCAG	3 cut(s)	415, 900, 1292
BspFNI	CGCG	4 cut(s)	201, 215, 398, 419
BspLI	GGNNCC	9 cut(s)	187, 194, 344, 387, 447, 896, 1065, 1066, 1146
BspMAI	CTGCAG	1 cut(s)	1020
BspMI	ACCTGC	1 cut(s)	882
BspPI	GGATC	1 cut(s)	1112
BspT107I	GGYRCC	2 cut(s)	385, 1144
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	3 cut(s)	143, 249, 264
BsrI	ACTGG	3 cut(s)	700, 1042, 1077
BssAI	RCCGGY	3 cut(s)	143, 249, 264
BssECI	CCNNGG	6 cut(s)	188, 189, 303, 338, 396, 1252
BssMI	GATC	4 cut(s)	108, 682, 1023, 1104
BssNI	GRCGYC	2 cut(s)	41, 1145
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	3 cut(s)	190, 1102, 1253
Bst4CI	ACNGT	3 cut(s)	385, 693, 1185
BstACI	GRCGYC	2 cut(s)	41, 1145
BstBAI	YACGTR	1 cut(s)	840
BstC8I	GCNNGC	5 cut(s)	210, 421, 637, 792, 879
BstDEI	CTNAG	4 cut(s)	134, 402, 887, 1279
BstDSI	CCRYGG	2 cut(s)	338, 396
BstFNI	CGCG	4 cut(s)	201, 215, 398, 419
BstH2I	RGCGCY	1 cut(s)	1148
BstHHI	GCGC	3 cut(s)	217, 479, 1147
BstKTI	GATC	4 cut(s)	111, 685, 1026, 1107
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	4 cut(s)	108, 682, 1023, 1104
BstMCI	CGRYCG	3 cut(s)	148, 265, 612
BstNI	CCWGG	3 cut(s)	190, 1102, 1253
BstSCI	CCNGG	3 cut(s)	188, 1100, 1251
BstSFI	CTRYAG	1 cut(s)	1016
BstUI	CGCG	4 cut(s)	201, 215, 398, 419
BstV2I	GAAGAC	1 cut(s)	1179
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BstZI	CGGCCG	2 cut(s)	145, 609
BsuI	GTATCC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	338, 396
BtrI	CACGTC	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	882
Cac8I	GCNNGC	5 cut(s)	210, 421, 637, 792, 879
CfoI	GCGC	3 cut(s)	217, 479, 1147
Cfr10I	RCCGGY	3 cut(s)	143, 249, 264
Cfr13I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1064, 1126
Cfr42I	CCGCGG	1 cut(s)	399
CseI	GACGC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	907, 942
CviAII	CATG	2 cut(s)	1097, 1201
DdeI	CTNAG	4 cut(s)	134, 402, 887, 1279
DinI	GGCGCC	1 cut(s)	1146
DpnI	GATC	4 cut(s)	110, 684, 1025, 1106
DpnII	GATC	4 cut(s)	108, 682, 1023, 1104
DrdI	GACNNNNNNGTC	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	1288
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	4 cut(s)	145, 210, 609, 1033
EagI	CGGCCG	2 cut(s)	145, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	1288
EciI	GGCGGA	4 cut(s)	518, 820, 896, 1233
Ecl136II	GAGCTC	2 cut(s)	322, 886
EclXI	CGGCCG	2 cut(s)	145, 609
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	324, 888
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	5 cut(s)	154, 193, 247, 1064, 1126
Eco52I	CGGCCG	2 cut(s)	145, 609
Eco53kI	GAGCTC	2 cut(s)	322, 886
Eco57I	CTGAAG	1 cut(s)	1055
Eco72I	CACGTG	1 cut(s)	840
Eco88I	CYCGRG	2 cut(s)	120, 815
EcoICRI	GAGCTC	2 cut(s)	322, 886
EcoO109I	RGGNCCY	2 cut(s)	185, 1064
EcoRII	CCWGG	3 cut(s)	188, 1100, 1251
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	324, 888
EgeI	GGCGCC	1 cut(s)	1146
EheI	GGCGCC	1 cut(s)	1146
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	1100, 1204
FaiI	YATR	3 cut(s)	1098, 1158, 1202
FalI	AAGNNNNNCTT	6 cut(s)	70, 102, 569, 601, 783, 815
FaqI	GGGAC	2 cut(s)	206, 1077
FatI	CATG	2 cut(s)	1096, 1200
FauI	CCCGC	3 cut(s)	640, 651, 916
FriOI	GRGCYC	2 cut(s)	324, 888
GlaI	GCGC	3 cut(s)	216, 478, 1146
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	683
HaeII	RGCGCY	1 cut(s)	1148
HapII	CCGG	9 cut(s)	144, 205, 250, 265, 647, 1197, 1215, 1227, 1241
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	217, 479, 1147
Hin1I	GRCGYC	2 cut(s)	41, 1145
Hin1II	CATG	2 cut(s)	1100, 1204
Hin6I	GCGC	3 cut(s)	215, 477, 1145
HinP1I	GCGC	3 cut(s)	215, 477, 1145
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	8 cut(s)	514, 551, 557, 994, 1012, 1206, 1221, 1248
HpaII	CCGG	9 cut(s)	144, 205, 250, 265, 647, 1197, 1215, 1227, 1241
HphI	GGTGA	4 cut(s)	523, 620, 941, 968
Hpy166II	GTNNAC	2 cut(s)	843, 972
Hpy188III	TCNNGA	7 cut(s)	60, 295, 404, 433, 660, 779, 898
Hpy8I	GTNNAC	2 cut(s)	843, 972
Hpy99I	CGWCG	9 cut(s)	43, 46, 242, 284, 329, 385, 547, 607, 1274
HpyAV	CCTTC	2 cut(s)	1079, 1098
HpyCH4III	ACNGT	3 cut(s)	385, 693, 1185
HpyCH4IV	ACGT	4 cut(s)	41, 240, 839, 974
HpyCH4V	TGCA	4 cut(s)	172, 244, 566, 1018
HpyF3I	CTNAG	4 cut(s)	134, 402, 887, 1279
HpySE526I	ACGT	4 cut(s)	41, 240, 839, 974
Hsp92I	GRCGYC	2 cut(s)	41, 1145
Hsp92II	CATG	2 cut(s)	1100, 1204
HspAI	GCGC	3 cut(s)	215, 477, 1145
KasI	GGCGCC	1 cut(s)	1144
KflI	GGGWCCC	1 cut(s)	1064
KspI	CCGCGG	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	108, 682, 1023, 1104
LmnI	GCTCC	5 cut(s)	451, 505, 833, 883, 1264
LweI	GCATC	1 cut(s)	1284
MaeII	ACGT	4 cut(s)	41, 240, 839, 974
MaeIII	GTNAC	1 cut(s)	1079
MalI	GATC	4 cut(s)	110, 684, 1025, 1106
MboI	GATC	4 cut(s)	108, 682, 1023, 1104
MboII	GAAGA	6 cut(s)	81, 366, 577, 713, 1044, 1179
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	4 cut(s)	324, 852, 888, 1269
MluCI	AATT	7 cut(s)	230, 354, 529, 561, 717, 1236, 1306
Mly113I	GGCGCC	1 cut(s)	1145
MlyI	GAGTC	4 cut(s)	545, 551, 988, 1006
MmeI	TCCRAC	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	4 cut(s)	53, 398, 495, 954
MspI	CCGG	9 cut(s)	144, 205, 250, 265, 647, 1197, 1215, 1227, 1241
MspR9I	CCNGG	3 cut(s)	190, 1102, 1253
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	190, 1102, 1253
MvnI	CGCG	4 cut(s)	201, 215, 398, 419
NarI	GGCGCC	1 cut(s)	1145
NdeII	GATC	4 cut(s)	108, 682, 1023, 1104
NlaIII	CATG	2 cut(s)	1100, 1204
NlaIV	GGNNCC	9 cut(s)	187, 194, 344, 387, 447, 896, 1065, 1066, 1146
PaeR7I	CTCGAG	1 cut(s)	120
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	4 cut(s)	324, 416, 1007, 1113
PfeI	GAWTC	4 cut(s)	514, 1206, 1221, 1248
PflFI	GACNNNGTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	904
PleI	GAGTC	4 cut(s)	545, 551, 988, 1006
PluTI	GGCGCC	1 cut(s)	1148
PmaCI	CACGTG	1 cut(s)	840
PmlI	CACGTG	1 cut(s)	840
PpsI	GAGTC	4 cut(s)	545, 551, 988, 1006
Ppu21I	YACGTR	1 cut(s)	840
PpuMI	RGGWCCY	1 cut(s)	1064
Psp124BI	GAGCTC	2 cut(s)	324, 888
Psp5II	RGGWCCY	1 cut(s)	1064
Psp6I	CCWGG	3 cut(s)	188, 1100, 1251
PspCI	CACGTG	1 cut(s)	840
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	3 cut(s)	188, 1100, 1251
PspN4I	GGNNCC	9 cut(s)	187, 194, 344, 387, 447, 896, 1065, 1066, 1146
PspPI	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1064, 1126
PspPPI	RGGWCCY	1 cut(s)	1064
PspXI	VCTCGAGB	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	1020
PsuI	RGATCY	1 cut(s)	682
PsyI	GACNNNGTC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	783
SacI	GAGCTC	2 cut(s)	324, 888
SacII	CCGCGG	1 cut(s)	399
Sau3AI	GATC	4 cut(s)	108, 682, 1023, 1104
Sau96I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1064, 1126
SchI	GAGTC	4 cut(s)	545, 551, 988, 1006
ScrFI	CCNGG	3 cut(s)	190, 1102, 1253
SduI	GDGCHC	4 cut(s)	324, 852, 888, 1269
SfaNI	GCATC	1 cut(s)	1284
SfcI	CTRYAG	1 cut(s)	1016
SfoI	GGCGCC	1 cut(s)	1146
Sfr274I	CTCGAG	1 cut(s)	120
Sfr303I	CCGCGG	1 cut(s)	399
SgrBI	CCGCGG	1 cut(s)	399
SinI	GGWCC	5 cut(s)	154, 193, 247, 1064, 1126
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	7 cut(s)	230, 354, 529, 561, 717, 1236, 1306
SspDI	GGCGCC	1 cut(s)	1144
SstI	GAGCTC	2 cut(s)	324, 888
StyD4I	CCNGG	3 cut(s)	188, 1100, 1251
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	385, 693, 1185
TaiI	ACGT	4 cut(s)	44, 243, 842, 977
TaqI	TCGA	8 cut(s)	61, 121, 282, 324, 434, 527, 545, 1107
TasI	AATT	7 cut(s)	230, 354, 529, 561, 717, 1236, 1306
TauI	GCSGC	9 cut(s)	150, 201, 215, 311, 337, 401, 541, 602, 611
TfiI	GAWTC	4 cut(s)	514, 1206, 1221, 1248
TspDTI	ATGAA	1 cut(s)	1085
Tth111I	GACNNNGTC	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	5 cut(s)	154, 193, 247, 1064, 1126
XapI	RAATTY	2 cut(s)	529, 1236
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 1198
XhoI	CTCGAG	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.