Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

22213 .. 22845

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgggggagagccacaacaacctccaccaccacgcaatgacgtcgtcctccgctacttctcaattgggtttggggataaggactgcttcttcctccaccgccagcgaaatcgtggaggctcgaggccacattctaagggccaccggccggaaggaccgccacaacaaggtttgcaccgccaaaggccccagggaccacagcgtccggctcacggcccacaccgccattcaattctacgatgcgcaagaccagctcggatactaccggcccagcaaggccgtcgattggctcatcaagaaagccaaggttgcaatcgacgagctcgacgagctgccgtcgtggaaccctaacttaatttctgttcagaaaacatcttctccgacagtgccgatatcctccgcgcaggacaagcagaacgtaagcctccatttctcgatggtagaggctccgaattctttgtctgctaatcggcgaggcgcaatggtgggtagcagccgagtggctgagccggtgaatcagaacagctcgaattttcagcaggtgaggatggtgtggaggccgaagttgttaatctttatctgcctacaattgcctcttatcgaagttgggctagcggccgaagttgtcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

210

Amino Acids

23.08

Weight (kDa)

9.69

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	44
Acc16I	TGCGCA	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	529
AccII	CGCG	1 cut(s)	401
AciI	CCGC	7 cut(s)	51, 99, 157, 177, 222, 399, 614
AcoI	YGGCCR	2 cut(s)	145, 615
AcsI	RAATTY	2 cut(s)	451, 529
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	147, 166, 211, 285
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	4 cut(s)	253, 322, 331, 525
AluI	AGCT	4 cut(s)	253, 322, 331, 525
Alw21I	GWGCWC	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	9 cut(s)	124, 138, 145, 184, 213, 266, 276, 557, 615
ApeKI	GCWGC	2 cut(s)	331, 492
ApoI	RAATTY	2 cut(s)	451, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspLEI	GCGC	3 cut(s)	244, 403, 479
AspS9I	GGNCC	6 cut(s)	138, 154, 185, 193, 214, 267
AsuHPI	GGTGA	2 cut(s)	523, 553
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	154, 193
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	318, 504
BccI	CCATC	2 cut(s)	430, 541
BceAI	ACGGC	3 cut(s)	228, 263, 319
BcgI	CGANNNNNNTGC	4 cut(s)	24, 58, 262, 296
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	611
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	332, 493, 615
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	3 cut(s)	333, 494, 616
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	154, 193
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	6 cut(s)	138, 154, 185, 193, 214, 267
BmiI	GGNNCC	4 cut(s)	187, 194, 344, 447
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	614
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	188, 189, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 166, 211, 285
Bse118I	RCCGGY	3 cut(s)	143, 264, 508
Bse3DI	GCAATG	2 cut(s)	42, 486
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	188, 189, 303
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	4 cut(s)	147, 166, 211, 285
BseMI	GCAATG	2 cut(s)	42, 486
BseMII	CTCAG	1 cut(s)	495
BseX3I	CGGCCG	2 cut(s)	145, 615
BseXI	GCAGC	2 cut(s)	318, 504
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	401
Bsh1285I	CGRYCG	2 cut(s)	148, 618
BshFI	GGCC	9 cut(s)	126, 140, 147, 186, 215, 268, 278, 559, 617
BsiEI	CGRYCG	2 cut(s)	148, 618
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	5 cut(s)	144, 148, 205, 265, 509
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	4 cut(s)	147, 166, 211, 285
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	9 cut(s)	126, 140, 147, 186, 215, 268, 278, 559, 617
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	7 cut(s)	51, 99, 157, 177, 222, 399, 614
BspANI	GGCC	9 cut(s)	126, 140, 147, 186, 215, 268, 278, 559, 617
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	4 cut(s)	187, 194, 344, 447
BspMI	ACCTGC	1 cut(s)	529
BspOI	GCTAGC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	42, 486
BsrFI	RCCGGY	3 cut(s)	143, 264, 508
BssAI	RCCGGY	3 cut(s)	143, 264, 508
BssECI	CCNNGG	3 cut(s)	188, 189, 303
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	103, 612
BstDEI	CTNAG	2 cut(s)	134, 504
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	3 cut(s)	244, 403, 479
BstMCI	CGRYCG	2 cut(s)	148, 618
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 250, 308, 328, 409
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	318, 504
BstZI	CGGCCG	2 cut(s)	145, 615
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	9 cut(s)	126, 140, 147, 186, 215, 268, 278, 559, 617
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	2 cut(s)	103, 612
CfoI	GCGC	3 cut(s)	244, 403, 479
Cfr10I	RCCGGY	3 cut(s)	143, 264, 508
Cfr13I	GGNCC	6 cut(s)	138, 154, 185, 193, 214, 267
CseI	GACGC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	134, 504
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	145, 615
EagI	CGGCCG	2 cut(s)	145, 615
Ecl136II	GAGCTC	1 cut(s)	322
EclXI	CGGCCG	2 cut(s)	145, 615
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	154, 193
Eco52I	CGGCCG	2 cut(s)	145, 615
Eco53kI	GAGCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	303
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	332, 493, 615
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	332, 493, 615
FspBI	CTAG	1 cut(s)	611
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	3 cut(s)	243, 402, 478
GluI	GCNGC	3 cut(s)	332, 493, 615
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	9 cut(s)	126, 140, 147, 186, 215, 268, 278, 559, 617
HapII	CCGG	5 cut(s)	144, 148, 205, 265, 509
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	244, 403, 479
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	3 cut(s)	242, 401, 477
HinP1I	GCGC	3 cut(s)	242, 401, 477
HinfI	GANTC	1 cut(s)	514
HpaII	CCGG	5 cut(s)	144, 148, 205, 265, 509
HphI	GGTGA	2 cut(s)	523, 553
Hpy188I	TCNGA	6 cut(s)	257, 366, 381, 450, 519, 629
Hpy188III	TCNNGA	2 cut(s)	295, 433
Hpy99I	CGWCG	5 cut(s)	46, 284, 320, 329, 340
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	41, 417
HpyCH4V	TGCA	2 cut(s)	174, 311
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 250, 308, 328, 409
HpyF3I	CTNAG	2 cut(s)	134, 504
HpySE526I	ACGT	2 cut(s)	41, 417
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	3 cut(s)	242, 401, 477
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	318, 504
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	2 cut(s)	41, 417
MboII	GAAGA	2 cut(s)	81, 366
MfeI	CAATTG	2 cut(s)	62, 587
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	6 cut(s)	62, 230, 354, 451, 529, 587
MmeI	TCCRAC	1 cut(s)	404
MseI	TTAA	2 cut(s)	353, 569
MspI	CCGG	5 cut(s)	144, 148, 205, 265, 509
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	2 cut(s)	62, 587
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	5 cut(s)	221, 250, 308, 328, 409
NheI	GCTAGC	1 cut(s)	610
NlaIV	GGNNCC	4 cut(s)	187, 194, 344, 447
NmeAIII	GCCGAG	1 cut(s)	521
NsbI	TGCGCA	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	529
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 324
PfeI	GAWTC	1 cut(s)	514
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	333, 494, 616
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	187, 194, 344, 447
PspPI	GGNCC	6 cut(s)	138, 154, 185, 193, 214, 267
PspXI	VCTCGAGB	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	353, 569
SatI	GCNGC	3 cut(s)	332, 493, 615
Sau96I	GGNCC	6 cut(s)	138, 154, 185, 193, 214, 267
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	154, 193
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	6 cut(s)	62, 230, 354, 451, 529, 587
SsiI	CCGC	7 cut(s)	51, 99, 157, 177, 222, 399, 614
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	44, 420
TaqI	TCGA	7 cut(s)	121, 282, 315, 324, 434, 527, 600
TasI	AATT	6 cut(s)	62, 230, 354, 451, 529, 587
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	353, 569
Tru9I	TTAA	2 cut(s)	353, 569
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	2 cut(s)	331, 492
TspRI	CASTG	1 cut(s)	390
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	154, 193
XapI	RAATTY	2 cut(s)	451, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	611
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.