Rroxscaffold_5G00356030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000293
Physical Location & Seq
Forward (+)
35202741 .. 35205183
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356030.1

Sequence Viewer

Length: 180 bp
ATGGTGGAGGCTCCGAGTCCTTTGTTTACTAATCGGCGAGGCACAATGGTGGGTAGCGGCGGAGTGGCGAAGGCGGTGAATAAGAACGCTCAAATTTTCTGCACTGCGGTGAGGATGGTGTTGAGGCCGAAGTTGTTAATCTTTGTCCGCCGAAAATTGCCTCGATCGAAGTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.48

Weight (kDa)

12.0

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 57, 60, 74, 107, 148
AcsI RAATTY 1 cut(s) 93
AleI CACNNNNGTG 2 cut(s) 47, 107
AoxI GGCC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 88, 121
BccI CCATC 1 cut(s) 109
BfaI CTAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 12
BseGI GGATG 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 167
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 5 cut(s) 57, 60, 74, 107, 148
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 12
BssMI GATC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstMCI CGRYCG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
CviJI RGCY 3 cut(s) 11, 127, 177
CviKI_1 RGCY 3 cut(s) 11, 127, 177
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
EciI GGCGGA 2 cut(s) 75, 137
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 178
GluI GCNGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 127
HinfI GANTC 1 cut(s) 16
HphI GGTGA 2 cut(s) 88, 121
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 102
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 16
MaeI CTAG 1 cut(s) 178
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MluCI AATT 2 cut(s) 93, 155
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 4 cut(s) 32, 105, 117, 171
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 2 cut(s) 47, 107
NdeII GATC 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 12
OliI CACNNNNGTG 2 cut(s) 47, 107
PkrI GCNGC 1 cut(s) 59
Ple19I CGATCG 1 cut(s) 167
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 12
PvuI CGATCG 1 cut(s) 167
RseI CAYNNNNRTG 2 cut(s) 47, 107
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 164
SchI GAGTC 1 cut(s) 25
SgeI CNNG 3 cut(s) 27, 50, 174
SmiMI CAYNNNNRTG 2 cut(s) 47, 107
Sse9I AATT 2 cut(s) 93, 155
SsiI CCGC 5 cut(s) 57, 60, 74, 107, 148
SspMI CTAG 1 cut(s) 178
TaqI TCGA 2 cut(s) 163, 167
TasI AATT 2 cut(s) 93, 155
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 109
TspRI CASTG 1 cut(s) 109
XapI RAATTY 1 cut(s) 93
XspI CTAG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.