Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000288.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

49570 .. 50431

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000288.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggaatatgcaggaagaaaaatgggggagagccacaacaacctccaccaccgagcaatgacggccaccgaccagaaggactgccacagcaaggtctacaccgccaaaggccccagggaccaccgcatccggctcactacccacactgccattcaattctacgacgtgcaagaccagctcgaatactaccggcccagcaaggtcgttgattgggtcatcaagaaagccaagaccgcaatcgacgagcttccgccgtggaacccgaaatcaatttctgttcagacaacatcttctccgacggtgccgatatctgtcgcgcaggacacgcagaacatgaacctccatttctcgatggtggaggctccaagttctttgtctgctaatcggcaaggcgcaatggtgggttgcagcggagtggcagagctggtgaatcagaacaggtcgaattttctgcaggtgaggatggtgtggaggtggtgttgcatgtcgggaacgatggagaggatggcaggggggttggaggagagaatgagagtggtggtggctaagtcgtcggcggcggcggcggggatgaactcggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

194

Amino Acids

21.7

Weight (kDa)

9.12

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	317
AciI	CCGC	9 cut(s)	102, 124, 234, 251, 411, 557, 560, 563, 566
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	178, 247, 424
AluI	AGCT	3 cut(s)	178, 247, 424
AoxI	GGCC	3 cut(s)	63, 109, 191
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	319, 395
AspS9I	GGNCC	3 cut(s)	110, 118, 192
AsuHPI	GGTGA	2 cut(s)	439, 469
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	4 cut(s)	346, 457, 490, 499
BceAI	ACGGC	2 cut(s)	78, 238
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BciT130I	CCWGG	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	4 cut(s)	409, 558, 561, 564
BlsI	GCNGC	4 cut(s)	410, 559, 562, 565
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	110, 118, 192
BmiI	GGNNCC	5 cut(s)	112, 119, 260, 303, 363
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	113, 114, 254
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 463, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	63, 402
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	3 cut(s)	113, 114, 254
BseGI	GGATG	4 cut(s)	126, 468, 510, 576
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	2 cut(s)	63, 402
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	420
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	65, 111, 193
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	130, 190
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	65, 111, 193
BspACI	CCGC	9 cut(s)	102, 124, 234, 251, 411, 557, 560, 563, 566
BspANI	GGCC	3 cut(s)	65, 111, 193
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	5 cut(s)	112, 119, 260, 303, 363
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	2 cut(s)	63, 402
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	113, 114, 254
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	4 cut(s)	126, 468, 510, 576
BstFNI	CGCG	1 cut(s)	317
BstHHI	GCGC	2 cut(s)	319, 395
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 175, 233, 325, 563
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	65, 111, 193
BtgI	CCRYGG	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	4 cut(s)	126, 468, 510, 576
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	319, 395
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	110, 118, 192
CviAII	CATG	2 cut(s)	334, 484
DdeI	CTNAG	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	309
FaeI	CATG	2 cut(s)	337, 487
FaiI	YATR	3 cut(s)	9, 335, 485
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	333, 483
FauI	CCCGC	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	409, 558, 561, 564
FokI	GGATG	3 cut(s)	113, 475, 517
Fsp4HI	GCNGC	4 cut(s)	409, 558, 561, 564
GlaI	GCGC	2 cut(s)	318, 394
GluI	GCNGC	4 cut(s)	409, 558, 561, 564
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	65, 111, 193
HapII	CCGG	2 cut(s)	130, 190
HhaI	GCGC	2 cut(s)	319, 395
Hin1II	CATG	2 cut(s)	337, 487
Hin6I	GCGC	2 cut(s)	317, 393
HinP1I	GCGC	2 cut(s)	317, 393
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	130, 190
HphI	GGTGA	2 cut(s)	439, 469
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	282, 297, 435, 580
Hpy188III	TCNNGA	3 cut(s)	220, 349, 489
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	4 cut(s)	167, 245, 301, 556
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	11, 169, 408, 454, 483
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 175, 233, 325, 563
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	337, 487
HspAI	GCGC	2 cut(s)	317, 393
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	165
MboII	GAAGA	2 cut(s)	27, 282
MluCI	AATT	3 cut(s)	155, 270, 445
MmeI	TCCRAC	2 cut(s)	320, 498
MnlI	CCTC	7 cut(s)	53, 350, 352, 453, 465, 495, 514
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	2 cut(s)	130, 190
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	62, 175, 233, 325, 563
NlaIII	CATG	2 cut(s)	337, 487
NlaIV	GGNNCC	5 cut(s)	112, 119, 260, 303, 363
NspI	RCATGY	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	410, 559, 562, 565
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	5 cut(s)	112, 119, 260, 303, 363
PspPI	GGNCC	3 cut(s)	110, 118, 192
PstI	CTGCAG	1 cut(s)	456
SatI	GCNGC	4 cut(s)	409, 558, 561, 564
Sau96I	GGNCC	3 cut(s)	110, 118, 192
ScrFI	CCNGG	1 cut(s)	115
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	3 cut(s)	155, 270, 445
SsiI	CCGC	9 cut(s)	102, 124, 234, 251, 411, 557, 560, 563, 566
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	180, 240, 350, 443
TasI	AATT	3 cut(s)	155, 270, 445
TauI	GCSGC	3 cut(s)	560, 563, 566
TfiI	GAWTC	1 cut(s)	430
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	408
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.