Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001036.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

188453 .. 190650

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001036.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgtgcctcctacgtgactgcagtgtctacaaaagcccagaaaatgaattttcggaacctttgaagaggccctttcaccgtggccttccattcgacagtttggtttgtcaagatgacaagctgcaggggtgtgttgaccgcactctagacagtagggctttcagaggctggattgagacagataacccttggacaaatgatgacgagactgataatgctttggtagccgtcggtggagtcgctataggtatttgcgacggcatttttcagttgcaaaatgcttgcgacgacaagacgttgccgtcgctaataagcttgcgacgccgtcgccattggtctttcgcgacggcaatttcactttccgcgacggcacaggaaattggccgtaggcttcaccgcacactccgagtttatccccgccgccgtcgccaacgacttgaccacaacaacctccaccaccgcacaacaacgtcatcctccgctgcttctcaattgggtttggggataaggactgcttcttcctccaccgctagcgaaatcgtggaggctcaaggccacattctaagggccactggccggaaggacagccacagcaaggtttgcaccaccaagggccccagggatcgcagtatcaggctcgtctcccacaccgccattcaattctacgacatgcaggaccggcttggatacgaccagcctagcaaggtcgtcgattggccgcgcaggacacgcagaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

246

Amino Acids

27.94

Weight (kDa)

9.7

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 301
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	3 cut(s)	344, 365, 721
AclWI	GGATC	1 cut(s)	630
AcoI	YGGCCR	3 cut(s)	382, 574, 716
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	576, 595
AgsI	TTSAA	2 cut(s)	64, 659
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	2 cut(s)	121, 315
AluI	AGCT	2 cut(s)	121, 315
Alw26I	GTCTC	3 cut(s)	170, 200, 646
AlwI	GGATC	1 cut(s)	630
AlwNI	CAGNNNCTG	1 cut(s)	168
AoxI	GGCC	8 cut(s)	68, 82, 382, 553, 567, 574, 613, 716
ApaI	GGGCCC	1 cut(s)	617
ApeKI	GCWGC	2 cut(s)	121, 482
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	5 cut(s)	69, 567, 613, 614, 676
AsuHPI	GGTGA	2 cut(s)	68, 386
AsuNHI	GCTAGC	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	617
BbvI	GCAGC	2 cut(s)	108, 469
BceAI	ACGGC	8 cut(s)	212, 274, 286, 309, 363, 369, 384, 408
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	619
BciVI	GTATCC	1 cut(s)	680
BcoDI	GTCTC	3 cut(s)	170, 200, 646
BfaI	CTAG	3 cut(s)	146, 531, 699
BfmI	CTRYAG	3 cut(s)	19, 122, 243
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	4 cut(s)	122, 421, 483, 719
BlsI	GCNGC	4 cut(s)	123, 422, 484, 720
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	5 cut(s)	69, 567, 613, 614, 676
BmiI	GGNNCC	3 cut(s)	57, 615, 616
BmrFI	CCNGG	1 cut(s)	619
BmtI	GCTAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	322
BsaJI	CCNNGG	5 cut(s)	79, 188, 609, 617, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	576, 595
Bse118I	RCCGGY	1 cut(s)	678
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	5 cut(s)	79, 188, 609, 617, 618
BseGI	GGATG	1 cut(s)	473
BseLI	CCNNNNNNNGG	2 cut(s)	576, 595
BseNI	ACTGG	1 cut(s)	577
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	108, 469
Bsh1236I	CGCG	3 cut(s)	344, 365, 721
BshFI	GGCC	8 cut(s)	70, 84, 384, 555, 569, 576, 615, 718
BsiSI	CCGG	2 cut(s)	577, 679
BslI	CCNNNNNNNGG	2 cut(s)	576, 595
BsmAI	GTCTC	3 cut(s)	170, 200, 646
BsmBI	CGTCTC	1 cut(s)	646
BsnI	GGCC	8 cut(s)	70, 84, 384, 555, 569, 576, 615, 718
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	1 cut(s)	622
Bsp68I	TCGCGA	1 cut(s)	344
BspANI	GGCC	8 cut(s)	70, 84, 384, 555, 569, 576, 615, 718
BspFNI	CGCG	3 cut(s)	344, 365, 721
BspLI	GGNNCC	3 cut(s)	57, 615, 616
BspMAI	CTGCAG	2 cut(s)	23, 126
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	678
BssECI	CCNNGG	5 cut(s)	79, 188, 609, 617, 618
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	188, 609
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	3 cut(s)	80, 98, 152
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	322
BstAPI	GCANNNNNTGC	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	283, 317, 532
BstDEI	CTNAG	1 cut(s)	563
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	473
BstFNI	CGCG	3 cut(s)	344, 365, 721
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	3 cut(s)	170, 200, 646
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	6 cut(s)	224, 321, 426, 600, 679, 729
BstNI	CCWGG	1 cut(s)	619
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	3 cut(s)	19, 122, 243
BstSLI	GKGCMC	1 cut(s)	617
BstUI	CGCG	3 cut(s)	344, 365, 721
BstV1I	GCAGC	2 cut(s)	108, 469
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	8 cut(s)	70, 84, 384, 555, 569, 576, 615, 718
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	473
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 570
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	283, 317, 532
CaiI	CAGNNNCTG	1 cut(s)	168
CfoI	GCGC	1 cut(s)	723
Cfr10I	RCCGGY	1 cut(s)	678
Cfr13I	GGNCC	5 cut(s)	69, 567, 613, 614, 676
CseI	GACGC	1 cut(s)	330
CviAII	CATG	1 cut(s)	670
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DrdI	GACNNNNNNGTC	2 cut(s)	23, 301
DseDI	GACNNNNNNGTC	2 cut(s)	23, 301
EaeI	YGGCCR	3 cut(s)	382, 574, 716
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	188, 609
Eco24I	GRGCYC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	676
EcoO109I	RGGNCCY	3 cut(s)	69, 613, 614
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	2 cut(s)	188, 609
EcoT38I	GRGCYC	1 cut(s)	617
ErhI	CCWWGG	2 cut(s)	188, 609
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	1 cut(s)	673
FaiI	YATR	2 cut(s)	245, 671
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 499, 531
FatI	CATG	1 cut(s)	669
FauI	CCCGC	1 cut(s)	425
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	122, 421, 483, 719
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	4 cut(s)	122, 421, 483, 719
FspBI	CTAG	3 cut(s)	146, 531, 699
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	4 cut(s)	122, 421, 483, 719
HaeIII	GGCC	8 cut(s)	70, 84, 384, 555, 569, 576, 615, 718
HapII	CCGG	2 cut(s)	577, 679
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	723
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	673
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	2 cut(s)	577, 679
HphI	GGTGA	2 cut(s)	68, 386
Hpy166II	GTNNAC	2 cut(s)	28, 136
Hpy188I	TCNGA	3 cut(s)	55, 164, 407
Hpy188III	TCNNGA	3 cut(s)	110, 146, 343
Hpy8I	GTNNAC	2 cut(s)	28, 136
HpyAV	CCTTC	2 cut(s)	95, 574
HpyCH4III	ACNGT	3 cut(s)	80, 98, 152
HpyCH4IV	ACGT	4 cut(s)	13, 296, 470, 737
HpyCH4V	TGCA	5 cut(s)	21, 124, 274, 603, 673
HpyF10VI	GCNNNNNNNGC	6 cut(s)	224, 321, 426, 600, 679, 729
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	4 cut(s)	13, 296, 470, 737
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	673
HspAI	GCGC	1 cut(s)	721
Kzo9I	GATC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	108, 469
MaeI	CTAG	3 cut(s)	146, 531, 699
MaeII	ACGT	4 cut(s)	13, 296, 470, 737
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	2 cut(s)	76, 510
MfeI	CAATTG	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	617
MluCI	AATT	5 cut(s)	47, 351, 378, 491, 659
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	17, 60, 158, 461, 487, 532, 538
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	2 cut(s)	577, 679
MspR9I	CCNGG	1 cut(s)	619
MunI	CAATTG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	619
MvnI	CGCG	3 cut(s)	344, 365, 721
MwoI	GCNNNNNNNGC	6 cut(s)	224, 321, 426, 600, 679, 729
NdeII	GATC	1 cut(s)	622
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	1 cut(s)	673
NlaIV	GGNNCC	3 cut(s)	57, 615, 616
NmuCI	GTSAC	1 cut(s)	14
NruI	TCGCGA	1 cut(s)	344
NspI	RCATGY	1 cut(s)	673
PasI	CCCWGGG	1 cut(s)	618
PflFI	GACNNNGTC	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	123, 422, 484, 720
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	3 cut(s)	57, 615, 616
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	5 cut(s)	69, 567, 613, 614, 676
PstI	CTGCAG	2 cut(s)	23, 126
PstNI	CAGNNNCTG	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	324
RruI	TCGCGA	1 cut(s)	344
SatI	GCNGC	4 cut(s)	122, 421, 483, 719
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	5 cut(s)	69, 567, 613, 614, 676
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	617
SfcI	CTRYAG	3 cut(s)	19, 122, 243
SinI	GGWCC	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
Sse9I	AATT	5 cut(s)	47, 351, 378, 491, 659
SspMI	CTAG	3 cut(s)	146, 531, 699
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	2 cut(s)	188, 609
TaaI	ACNGT	3 cut(s)	80, 98, 152
TaiI	ACGT	4 cut(s)	16, 299, 473, 740
TaqI	TCGA	2 cut(s)	93, 711
TasI	AATT	5 cut(s)	47, 351, 378, 491, 659
TauI	GCSGC	2 cut(s)	423, 721
TscAI	CASTG	2 cut(s)	28, 577
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	121, 482
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	28, 577
Tth111I	GACNNNGTC	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	3 cut(s)	146, 531, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.