Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

30134430 .. 30135198

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACCAATTTCCGTAACTGCTCCGTGATGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCGCTAGCGAAATCGTGGAGGCTCAAGGCCACATTCTAAGGGCCACGTGCCGGAAGGGCAGCCACGGCAAGGTTTGCACCACCAAAGGCCCCGGGGATCGCAGTATCGGGCTCGTCGCCCACACCGCCATTCAATTCTACGACATGCAGGACCGGCTTGGATACGACCAGCCTAGCAAGGTCGTTGATTGGCAGCGCAGGACACGCAGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

10.04

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	38 - 84	3.5e-14	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 186
AclWI	GGATC	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	111, 130
AgsI	TTSAA	1 cut(s)	194
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	88, 102, 148
ApeKI	GCWGC	2 cut(s)	120, 253
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	102, 149, 211
AsuC2I	CCSGG	2 cut(s)	153, 154
AsuNHI	GCTAGC	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	132, 265
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	215
BcnI	CCSGG	2 cut(s)	153, 154
BfaI	CTAG	2 cut(s)	66, 234
BfuI	GTATCC	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	121, 254
BlsI	GCNGC	2 cut(s)	122, 255
Bme1390I	CCNGG	2 cut(s)	153, 154
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	102, 149, 211
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	153, 154
BmtI	GCTAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	153, 154
BsaAI	YACGTR	1 cut(s)	108
BsaJI	CCNNGG	4 cut(s)	124, 151, 152, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 130
Bse118I	RCCGGY	1 cut(s)	213
BseDI	CCNNGG	4 cut(s)	124, 151, 152, 153
BseLI	CCNNNNNNNGG	2 cut(s)	111, 130
BseXI	GCAGC	2 cut(s)	132, 265
BshFI	GGCC	3 cut(s)	90, 104, 150
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	112, 153, 214
BslI	CCNNNNNNNGG	2 cut(s)	111, 130
BsnI	GGCC	3 cut(s)	90, 104, 150
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	63, 186
BspANI	GGCC	3 cut(s)	90, 104, 150
BspLI	GGNNCC	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	4 cut(s)	124, 151, 152, 153
BssMI	GATC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 126, 135, 185, 214, 264
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	151, 152
BstV1I	GCAGC	2 cut(s)	132, 265
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	90, 104, 150
BtgI	CCRYGG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	102, 149, 211
Cfr9I	CCCGGG	1 cut(s)	152
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	83, 90, 104, 123, 150, 172, 217, 232
CviKI_1	RGCY	8 cut(s)	83, 90, 104, 123, 150, 172, 217, 232
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	211
Eco72I	CACGTG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	121, 254
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	121, 254
FspBI	CTAG	2 cut(s)	66, 234
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	121, 254
HaeIII	GGCC	3 cut(s)	90, 104, 150
HapII	CCGG	3 cut(s)	112, 153, 214
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	112, 153, 214
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	107, 272
HpyCH4V	TGCA	2 cut(s)	138, 208
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 126, 135, 185, 214, 264
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	107, 272
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	125, 166, 194, 227, 242, 244
Lsp1109I	GCAGC	2 cut(s)	132, 265
MaeI	CTAG	2 cut(s)	66, 234
MaeII	ACGT	2 cut(s)	107, 272
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	7, 194
MnlI	CCTC	2 cut(s)	67, 73
MspI	CCGG	3 cut(s)	112, 153, 214
MspR9I	CCNGG	2 cut(s)	153, 154
MwoI	GCNNNNNNNGC	6 cut(s)	117, 126, 135, 185, 214, 264
NciI	CCSGG	2 cut(s)	153, 154
NdeII	GATC	1 cut(s)	157
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	122, 255
PmaCI	CACGTG	1 cut(s)	108
PmlI	CACGTG	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	3 cut(s)	102, 149, 211
SatI	GCNGC	2 cut(s)	121, 254
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	102, 149, 211
ScrFI	CCNGG	2 cut(s)	153, 154
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	110, 135, 243, 275
SinI	GGWCC	1 cut(s)	211
SmaI	CCCGGG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	7, 194
SsiI	CCGC	2 cut(s)	63, 186
SspMI	CTAG	2 cut(s)	66, 234
StyD4I	CCNGG	2 cut(s)	151, 152
TaiI	ACGT	2 cut(s)	110, 275
TasI	AATT	2 cut(s)	7, 194
TseI	GCWGC	2 cut(s)	120, 253
TspGWI	ACGGA	1 cut(s)	13
TspMI	CCCGGG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	152
XspI	CTAG	2 cut(s)	66, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.