Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013983.1

Orthogroup ID

OG0014137

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2097

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

tttctcactctctctcaccgtcggaaagtctcactcgccgatcaaatctccgatcttggttcgccgattagctccgaacggccgaaagggataataattagagtcatggctatgagtcacgcgagatcgttgaggagcgttatcaattccatggaattggaagcagtaggggtgttagtttcagggcgacgagcattttctgctaaggcaaagaagggtggcaaaggtggtgctggtgatgcaccgaaggtgtcaattttagacaaggaagttaagtctacgactgtggttggagctaatatactcaaggatgggacggatcctaaaatcttgccagattctgagtaccctgaatggctttggcatctgattgataagcgtcctgcgttgagtgaactgagaaggaagaacattgaaactctcccctatgaagatctcaagcgatttgttaagctggataaccgggcaaggatcaaggagaacaactcgctaaaggccaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L37

Protein Analysis

168

Amino Acids

18.63

Weight (kDa)

10.07

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01740 AT5G14290
fragaria_vesca	FvH4_6g02050
prunus_persica	Prupe.6G125800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449841
rosa_laevigata	RLG00000025788 RLG00000025790
rosa_multiflora	Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427670
rosa_rugosa	Rorug02G0623700
rosa_samantha	Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana	Rw3G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	1 cut(s)	122
AclWI	GGATC	3 cut(s)	314, 327, 479
AcoI	YGGCCR	1 cut(s)	80
AfaI	GTAC	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	3 cut(s)	72, 296, 454
AluI	AGCT	3 cut(s)	72, 296, 454
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	3 cut(s)	314, 327, 479
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	80, 495
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	8, 248
BamHI	GGATCC	1 cut(s)	319
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	229, 373
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	290, 422
BpuMI	CCSGG	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	333, 389
BseRI	GAGGAG	1 cut(s)	148
BseX3I	CGGCCG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	82, 497
BsiEI	CGRYCG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	82, 497
Bsp143I	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	82, 497
BspCNI	CTCAG	2 cut(s)	334, 390
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	3 cut(s)	314, 327, 479
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	20, 286
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	204, 342, 398
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	6 cut(s)	43, 55, 128, 322, 436, 474
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 239
BstSCI	CCNGG	1 cut(s)	462
BstUI	CGCG	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	319, 433
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	319, 433
BstZI	CGGCCG	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	82, 497
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	341
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	106, 151
CviJI	RGCY	7 cut(s)	72, 82, 110, 296, 358, 454, 497
CviKI_1	RGCY	7 cut(s)	72, 82, 110, 296, 358, 454, 497
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	204, 342, 398
DpnI	GATC	6 cut(s)	42, 54, 127, 321, 435, 473
DpnII	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
EaeI	YGGCCR	1 cut(s)	80
EagI	CGGCCG	1 cut(s)	80
EclXI	CGGCCG	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	150
Eco52I	CGGCCG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	109, 154
FaiI	YATR	5 cut(s)	107, 113, 152, 302, 429
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	105, 150
FblI	GTMKAC	1 cut(s)	278
FokI	GGATG	1 cut(s)	323
FspBI	CTAG	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	82, 497
HapII	CCGG	1 cut(s)	463
HgaI	GACGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	109, 154
HinfI	GANTC	3 cut(s)	102, 115, 338
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	2 cut(s)	8, 248
Hpy166II	GTNNAC	2 cut(s)	279, 395
Hpy188I	TCNGA	5 cut(s)	24, 52, 76, 343, 369
Hpy8I	GTNNAC	2 cut(s)	279, 395
Hpy99I	CGWCG	2 cut(s)	24, 192
HpyAV	CCTTC	3 cut(s)	208, 241, 396
HpyCH4III	ACNGT	2 cut(s)	20, 286
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 239
HpyF3I	CTNAG	3 cut(s)	204, 342, 398
Hsp92II	CATG	2 cut(s)	109, 154
Kzo9I	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
LmnI	GCTCC	3 cut(s)	77, 135, 293
LpnPI	CCDG	7 cut(s)	168, 219, 348, 363, 396, 440, 476
LweI	GCATC	2 cut(s)	229, 373
MaeI	CTAG	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	6 cut(s)	42, 54, 127, 321, 435, 473
MboI	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
MboII	GAAGA	2 cut(s)	418, 443
MflI	RGATCY	2 cut(s)	319, 433
MluCI	AATT	4 cut(s)	96, 145, 155, 255
MlyI	GAGTC	2 cut(s)	111, 124
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	1 cut(s)	126
MseI	TTAA	2 cut(s)	273, 450
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	1 cut(s)	463
MspR9I	CCNGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	200, 239
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
NlaIII	CATG	2 cut(s)	109, 154
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	338
PleI	GAGTC	2 cut(s)	110, 123
PpsI	GAGTC	2 cut(s)	110, 123
PspN4I	GGNNCC	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	319, 433
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	273, 450
Sau3AI	GATC	6 cut(s)	40, 52, 125, 319, 433, 471
SchI	GAGTC	2 cut(s)	111, 124
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	5 cut(s)	74, 229, 252, 298, 456
SfaNI	GCATC	2 cut(s)	229, 373
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	305, 437
SmoI	CTYRAG	2 cut(s)	305, 437
Sse9I	AATT	4 cut(s)	96, 145, 155, 255
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	20, 286
TasI	AATT	4 cut(s)	96, 145, 155, 255
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	273, 450
Tru9I	TTAA	2 cut(s)	273, 450
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.