Rmu_sc0037111.1_g000001

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037111.1
OG0014137
Physical Location & Seq
Forward (+)
1 .. 907
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037111.1_g000001.1.cds

Sequence Viewer

Length: 466 bp
ctttccttcttcttcttcagtttctcactctctctcaccgtcggaaagtctcactcgccgatcaaatctccgatcttggttcgccgattagctccgaacggccgaaagggataataattagagtcatggctatgagtcacgcgagatcgttgaggagcgttatcaattccatggaattggaagcagtaggggtgttagtttcagggcgacgagcattttctgctaaggcaaagaagggtggcaaaggtggtgctggtgatgcaccgaaggtgtcaattttagacaaggaagttaagtctacgactgtggttggagctaatatactcaaggatgggacggatcctaaaatcttgccagattctgagtaccctgaatggctttggcatctgattgataagcgtcctgcgttgagtgaactgagaaggaagaacattgaaactctcccctatgaagatctcaagcgatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

154

Amino Acids

17.01

Weight (kDa)

9.88

Isoelectric Point (pI)

64.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 298
AccII CGCG 1 cut(s) 142
AclWI GGATC 2 cut(s) 334, 347
AcoI YGGCCR 1 cut(s) 100
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 1 cut(s) 436
AluBI AGCT 2 cut(s) 92, 316
AluI AGCT 2 cut(s) 92, 316
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 334, 347
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 28, 268
BamHI GGATCC 1 cut(s) 339
BccI CCATC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 54
BglII AGATCT 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 341
BmsI GCATC 2 cut(s) 249, 393
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 310, 442
BsaJI CCNNGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 353, 409
BseRI GAGGAG 1 cut(s) 168
BseX3I CGGCCG 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 5 cut(s) 60, 72, 145, 339, 453
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 354, 410
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 2 cut(s) 334, 347
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 5 cut(s) 60, 72, 145, 339, 453
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 40, 306
BstAPI GCANNNNNTGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 224, 362, 418
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 5 cut(s) 63, 75, 148, 342, 456
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 5 cut(s) 60, 72, 145, 339, 453
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 220, 259
BstUI CGCG 1 cut(s) 142
BstX2I RGATCY 2 cut(s) 339, 453
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 2 cut(s) 339, 453
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 361
CseI GACGC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 366
CviAII CATG 2 cut(s) 126, 171
CviJI RGCY 5 cut(s) 92, 102, 130, 316, 378
CviKI_1 RGCY 5 cut(s) 92, 102, 130, 316, 378
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 3 cut(s) 224, 362, 418
DpnI GATC 5 cut(s) 62, 74, 147, 341, 455
DpnII GATC 5 cut(s) 60, 72, 145, 339, 453
EaeI YGGCCR 1 cut(s) 100
EagI CGGCCG 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 129, 174
FaiI YATR 5 cut(s) 127, 133, 172, 322, 449
FaqI GGGAC 1 cut(s) 348
FatI CATG 2 cut(s) 125, 170
FblI GTMKAC 1 cut(s) 298
FokI GGATG 1 cut(s) 343
HaeIII GGCC 1 cut(s) 102
HgaI GACGC 1 cut(s) 388
Hin1II CATG 2 cut(s) 129, 174
HinfI GANTC 3 cut(s) 122, 135, 358
HphI GGTGA 2 cut(s) 28, 268
Hpy166II GTNNAC 2 cut(s) 299, 415
Hpy188I TCNGA 5 cut(s) 44, 72, 96, 363, 389
Hpy8I GTNNAC 2 cut(s) 299, 415
Hpy99I CGWCG 2 cut(s) 44, 212
HpyAV CCTTC 4 cut(s) 16, 228, 261, 416
HpyCH4III ACNGT 2 cut(s) 40, 306
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 259
HpyF3I CTNAG 3 cut(s) 224, 362, 418
Hsp92II CATG 2 cut(s) 129, 174
Kzo9I GATC 5 cut(s) 60, 72, 145, 339, 453
LmnI GCTCC 3 cut(s) 97, 155, 313
LpnPI CCDG 5 cut(s) 188, 239, 368, 383, 416
LweI GCATC 2 cut(s) 249, 393
MaeIII GTNAC 1 cut(s) 136
MalI GATC 5 cut(s) 62, 74, 147, 341, 455
MboI GATC 5 cut(s) 60, 72, 145, 339, 453
MboII GAAGA 4 cut(s) 4, 7, 438, 463
MflI RGATCY 2 cut(s) 339, 453
MluCI AATT 4 cut(s) 116, 165, 175, 275
MlyI GAGTC 2 cut(s) 131, 144
MmeI TCCRAC 2 cut(s) 22, 291
MnlI CCTC 1 cut(s) 146
MseI TTAA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 130
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 220, 259
NcoI CCATGG 1 cut(s) 170
NdeII GATC 5 cut(s) 60, 72, 145, 339, 453
NlaIII CATG 2 cut(s) 129, 174
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 358
PleI GAGTC 2 cut(s) 130, 143
PpsI GAGTC 2 cut(s) 130, 143
PspN4I GGNNCC 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 339, 453
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 130
SaqAI TTAA 1 cut(s) 293
Sau3AI GATC 5 cut(s) 60, 72, 145, 339, 453
SchI GAGTC 2 cut(s) 131, 144
SetI ASST 4 cut(s) 94, 249, 272, 318
SfaNI GCATC 2 cut(s) 249, 393
SmiMI CAYNNNNRTG 1 cut(s) 130
SmlI CTYRAG 2 cut(s) 325, 457
SmoI CTYRAG 2 cut(s) 325, 457
Sse9I AATT 4 cut(s) 116, 165, 175, 275
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 40, 306
TasI AATT 4 cut(s) 116, 165, 175, 275
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.