AT5G14290

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014137
Physical Location & Seq
Reverse (-)
4612097 .. 4614401
2305 bp
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UTR
Exon/CDS
Intron
AT5G14290.1

Sequence Viewer

Length: 399 bp
ATGAACCTTATTCGAATGTTTGGGGATTCCATTTCTAGATCCAAAGATGTAATGCGATTTGTGTGCCAAAGAACATTTGCTACAGCTGCTGGTAAAGCGAAGAAGGTTGGGAGGGGAGATGGAGGTAATGATGCACCAAAAGCATCGAACTTGAGCAAAGAGATCAAATCGAGTATGGTTGTTAGTGCTAATACTCTGAAAGATGGATTGGACCCTAAGATCTTGCCTAATTCAGATCACCCTGATTATTTATGGCATCTGCTTGATAAGCGACCGGCGCTTAGCGAACTTAGAAGGAAGAACGTTGAGACTCTTAGTTTTGATGATCTTAAACGTTTTGTGAAGCTGGATACCAGAGCTAGAATCAAGGAGAACCATTCTATCAAGGCCAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

10.05

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37 PF08561 52 - 129 3.5e-13 Mitochondrial ribosomal protein L37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 303, 334
AclWI GGATC 1 cut(s) 33
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 3 cut(s) 86, 346, 359
AluI AGCT 3 cut(s) 86, 346, 359
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 113, 197
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 36, 360
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 281
BfuI GTATCC 1 cut(s) 343
BglII AGATCT 1 cut(s) 219
BisI GCNGC 1 cut(s) 87
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 3 cut(s) 121, 152, 265
Bpu1102I GCTNAGC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 274
BseXI GCAGC 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 13
Bsp143I GATC 5 cut(s) 38, 162, 219, 235, 325
Bsp1720I GCTNAGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 274
BssMI GATC 5 cut(s) 38, 162, 219, 235, 325
BstBI TTCGAA 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 216, 281, 290, 314
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 5 cut(s) 41, 165, 222, 238, 328
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 5 cut(s) 38, 162, 219, 235, 325
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 5 cut(s) 86, 95, 140, 268, 277
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 38, 219
BstYI RGATCY 2 cut(s) 38, 219
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 389
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 211
CviJI RGCY 4 cut(s) 86, 346, 359, 389
CviKI_1 RGCY 4 cut(s) 86, 346, 359, 389
DdeI CTNAG 4 cut(s) 216, 281, 290, 314
DpnI GATC 5 cut(s) 40, 164, 221, 237, 327
DpnII GATC 5 cut(s) 38, 162, 219, 235, 325
Eco47I GGWCC 1 cut(s) 211
FaiI YATR 2 cut(s) 176, 253
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 36, 360
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 280
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 3 cut(s) 26, 310, 363
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 198, 235
Hpy188III TCNNGA 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 97, 288
HpyCH4IV ACGT 2 cut(s) 303, 334
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 95, 140, 268, 277
HpyF3I CTNAG 4 cut(s) 216, 281, 290, 314
HpySE526I ACGT 2 cut(s) 303, 334
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 5 cut(s) 38, 162, 219, 235, 325
LpnPI CCDG 5 cut(s) 75, 255, 288, 332, 367
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 3 cut(s) 121, 152, 265
MaeI CTAG 2 cut(s) 36, 360
MaeII ACGT 2 cut(s) 303, 334
MalI GATC 5 cut(s) 40, 164, 221, 237, 327
MboI GATC 5 cut(s) 38, 162, 219, 235, 325
MboII GAAGA 2 cut(s) 112, 310
MflI RGATCY 2 cut(s) 38, 219
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 2 cut(s) 105, 116
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 275
MwoI GCNNNNNNNGC 5 cut(s) 86, 95, 140, 268, 277
NdeII GATC 5 cut(s) 38, 162, 219, 235, 325
NlaIV GGNNCC 1 cut(s) 213
NspV TTCGAA 1 cut(s) 13
PfeI GAWTC 2 cut(s) 26, 363
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp1406I AACGTT 2 cut(s) 303, 334
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 211
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 2 cut(s) 38, 219
PvuII CAGCTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 5 cut(s) 38, 162, 219, 235, 325
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 304
SetI ASST 8 cut(s) 9, 88, 108, 127, 306, 337, 348, 361
SfaNI GCATC 3 cut(s) 121, 152, 265
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 229
SspMI CTAG 2 cut(s) 36, 360
TaiI ACGT 2 cut(s) 306, 337
TaqI TCGA 3 cut(s) 13, 146, 170
TasI AATT 1 cut(s) 229
TfiI GAWTC 2 cut(s) 26, 363
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 211
XbaI TCTAGA 1 cut(s) 35
XspI CTAG 2 cut(s) 36, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.