Rmu_sc0000610.1_g000005

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000610.1
OG0014137
Physical Location & Seq
Forward (+)
8785 .. 12264
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000610.1_g000005.1.cds

Sequence Viewer

Length: 966 bp
atggatggcgtccatcatagtgatggcgccccaggtgatgctgcaatcaccaacttgcttcaaataacgtttcagacgctcaggcctaaccaaaattctaaagcctctcgctcattctacaaagcccgttccttaggaaaactaggactgagatcatcctatgcaaatgatatgatgcctttgcaaacaaaaaatattatctttgttctgcaagttctgcaagtcatgtactctctttctcagtttgaaatgatggatcgagattggaaaaatttgcctaaacaccttttaaattcggttgtacaactattagggtcactgtctgactatttacgatttagtgttgtgtgtaagtcgtggcatggtgtagcaaaagataatcaaacccaattctcaaaaagggtagttccaatgttcttgattgccgctgaccaagaagatacatggaaagtgtacaattttctcactctctctcaccgtcggaaagtctcactcgccgatcaaatctccgatcttggtttgccgattagctccgaacggccgatagggataataattagagtcatggctatgagtcacgcgagatcgttgaggagcgttatcaattccatggaattggaagcagtaggggtgttagtttcagggcaacgagcattttctgctaaggcaaagaaaggtggcaaaggtggtgctggtgatgcaccgaaggcgtcaattttagataaggaagttaagtctacgactgtggttggagctaatatactcaaggatgggacggatcctaaaatcttgccagattccgagtaccctgaatggctttggcgtctgattgataagcgtcctgcgttgagtgaactgagaaggaagaacattgaaactctcccctatgaagatctcaagcgatttgttaagctggataaccgggcaaggatcaaggagaacaactcgctaaaggccaagaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

321

Amino Acids

36.02

Weight (kDa)

9.84

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 737
AccII CGCG 1 cut(s) 581
AciI CCGC 1 cut(s) 426
AclI AACGTT 1 cut(s) 68
AclWI GGATC 4 cut(s) 264, 773, 786, 938
AcoI YGGCCR 1 cut(s) 539
AcsI RAATTY 3 cut(s) 94, 271, 292
AcyI GRCGYC 4 cut(s) 9, 27, 710, 823
AfaI GTAC 4 cut(s) 230, 303, 455, 806
AgsI TTSAA 3 cut(s) 62, 248, 875
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 531, 755, 913
AluI AGCT 3 cut(s) 531, 755, 913
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 4 cut(s) 264, 773, 786, 938
AoxI GGCC 3 cut(s) 83, 539, 954
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 3 cut(s) 94, 271, 292
AspLEI GCGC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 4 cut(s) 40, 47, 467, 707
AxyI CCTNAGG 1 cut(s) 133
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 28
BccI CCATC 4 cut(s) 17, 21, 247, 764
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 143, 964
BfoI RGCGCY 1 cut(s) 30
BglII AGATCT 1 cut(s) 892
BisI GCNGC 2 cut(s) 42, 426
BlsI GCNGC 2 cut(s) 43, 427
Bme1390I CCNGG 2 cut(s) 33, 923
BmiI GGNNCC 2 cut(s) 28, 780
BmrFI CCNGG 2 cut(s) 33, 923
BmsI GCATC 3 cut(s) 28, 165, 688
BplI GAGNNNNNCTC 2 cut(s) 929, 961
Bpu10I CCTNAGC 2 cut(s) 80, 663
BpuEI CTTGAG 2 cut(s) 749, 881
BpuMI CCSGG 1 cut(s) 923
BsaHI GRCGYC 4 cut(s) 9, 27, 710, 823
BsaJI CCNNGG 2 cut(s) 31, 609
Bse21I CCTNAGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 31, 609
BseGI GGATG 3 cut(s) 10, 155, 775
BseMII CTCAG 4 cut(s) 94, 140, 254, 848
BseRI GAGGAG 1 cut(s) 607
BseX3I CGGCCG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 581
Bsh1285I CGRYCG 1 cut(s) 542
BshFI GGCC 3 cut(s) 85, 541, 956
BshNI GGYRCC 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 542
BsiSI CCGG 1 cut(s) 922
BslFI GGGAC 1 cut(s) 787
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 787
BsnI GGCC 3 cut(s) 85, 541, 956
Bsp1407I TGTACA 2 cut(s) 301, 453
Bsp143I GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 1 cut(s) 426
BspANI GGCC 3 cut(s) 85, 541, 956
BspCNI CTCAG 4 cut(s) 93, 141, 253, 849
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 2 cut(s) 28, 780
BspPI GGATC 4 cut(s) 264, 773, 786, 938
BspT107I GGYRCC 1 cut(s) 26
BsrGI TGTACA 2 cut(s) 301, 453
BssECI CCNNGG 2 cut(s) 31, 609
BssMI GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
BssNI GRCGYC 4 cut(s) 9, 27, 710, 823
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 3 cut(s) 321, 479, 745
BstACI GRCGYC 4 cut(s) 9, 27, 710, 823
BstAPI GCANNNNNTGC 2 cut(s) 217, 659
BstAUI TGTACA 2 cut(s) 301, 453
BstDEI CTNAG 6 cut(s) 80, 133, 149, 240, 663, 857
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 3 cut(s) 10, 155, 775
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 8 cut(s) 155, 259, 502, 514, 587, 781, 895, 933
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
BstMCI CGRYCG 1 cut(s) 542
BstMWI GCNNNNNNNGC 4 cut(s) 217, 659, 698, 707
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 31, 921
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 778, 892
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 2 cut(s) 778, 892
BstZI CGGCCG 1 cut(s) 539
Bsu36I CCTNAGG 1 cut(s) 133
BsuRI GGCC 3 cut(s) 85, 541, 956
BtgI CCRYGG 1 cut(s) 609
BtsCI GGATG 3 cut(s) 10, 155, 775
BtsIMutI CAGTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 29
CseI GACGC 4 cut(s) 85, 699, 812, 827
Csp6I GTAC 4 cut(s) 229, 302, 454, 805
CviAII CATG 5 cut(s) 226, 362, 444, 565, 610
CviQI GTAC 4 cut(s) 229, 302, 454, 805
DdeI CTNAG 6 cut(s) 80, 133, 149, 240, 663, 857
DinI GGCGCC 1 cut(s) 28
DpnI GATC 8 cut(s) 154, 258, 501, 513, 586, 780, 894, 932
DpnII GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
DraI TTTAAA 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 539
EagI CGGCCG 1 cut(s) 539
EclXI CGGCCG 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 609
Eco147I AGGCCT 1 cut(s) 85
Eco52I CGGCCG 1 cut(s) 539
Eco81I CCTNAGG 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 609
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 5 cut(s) 229, 365, 447, 568, 613
FaqI GGGAC 1 cut(s) 787
FatI CATG 5 cut(s) 225, 361, 443, 564, 609
FblI GTMKAC 1 cut(s) 737
Fnu4HI GCNGC 2 cut(s) 42, 426
FokI GGATG 3 cut(s) 17, 142, 782
Fsp4HI GCNGC 2 cut(s) 42, 426
FspBI CTAG 2 cut(s) 143, 964
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 42, 426
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 85, 541, 956
HapII CCGG 1 cut(s) 922
HgaI GACGC 4 cut(s) 85, 699, 812, 827
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 4 cut(s) 9, 27, 710, 823
Hin1II CATG 5 cut(s) 229, 365, 447, 568, 613
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 3 cut(s) 561, 574, 797
HpaII CCGG 1 cut(s) 922
HphI GGTGA 4 cut(s) 40, 47, 467, 707
Hpy166II GTNNAC 3 cut(s) 454, 738, 854
Hpy188I TCNGA 7 cut(s) 75, 325, 483, 511, 535, 802, 828
Hpy188III TCNNGA 2 cut(s) 260, 418
Hpy8I GTNNAC 3 cut(s) 454, 738, 854
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 2 cut(s) 700, 855
HpyCH4III ACNGT 3 cut(s) 321, 479, 745
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 44, 164, 184, 211, 220, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 659, 698, 707
HpyF3I CTNAG 6 cut(s) 80, 133, 149, 240, 663, 857
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 4 cut(s) 9, 27, 710, 823
Hsp92II CATG 5 cut(s) 229, 365, 447, 568, 613
HspAI GCGC 1 cut(s) 27
KasI GGCGCC 1 cut(s) 26
Kzo9I GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
LmnI GCTCC 3 cut(s) 536, 594, 752
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 3 cut(s) 28, 165, 688
MaeI CTAG 2 cut(s) 143, 964
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 315, 575
MalI GATC 8 cut(s) 154, 258, 501, 513, 586, 780, 894, 932
MboI GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
MboII GAAGA 3 cut(s) 449, 877, 902
MflI RGATCY 2 cut(s) 778, 892
MluCI AATT 9 cut(s) 94, 271, 292, 389, 457, 555, 604, 614, 714
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 2 cut(s) 570, 583
MmeI TCCRAC 2 cut(s) 461, 730
MnlI CCTC 2 cut(s) 115, 585
MseI TTAA 3 cut(s) 290, 732, 909
MslI CAYNNNNRTG 3 cut(s) 18, 21, 569
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 1 cut(s) 922
MspR9I CCNGG 2 cut(s) 33, 923
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 4 cut(s) 217, 659, 698, 707
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 1 cut(s) 923
NcoI CCATGG 1 cut(s) 609
NdeII GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
NlaIII CATG 5 cut(s) 229, 365, 447, 568, 613
NlaIV GGNNCC 2 cut(s) 28, 780
NmuCI GTSAC 2 cut(s) 315, 575
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 1 cut(s) 797
PkrI GCNGC 2 cut(s) 43, 427
PleI GAGTC 2 cut(s) 569, 582
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 2 cut(s) 569, 582
Psp1406I AACGTT 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 28, 780
PsuI RGATCY 2 cut(s) 778, 892
RsaI GTAC 4 cut(s) 230, 303, 455, 806
RsaNI GTAC 4 cut(s) 229, 302, 454, 805
RseI CAYNNNNRTG 3 cut(s) 18, 21, 569
SaqAI TTAA 3 cut(s) 290, 732, 909
SatI GCNGC 2 cut(s) 42, 426
Sau3AI GATC 8 cut(s) 152, 256, 499, 511, 584, 778, 892, 930
SchI GAGTC 2 cut(s) 570, 583
ScrFI CCNGG 2 cut(s) 33, 923
SetI ASST 8 cut(s) 37, 71, 288, 533, 679, 688, 757, 915
SfaNI GCATC 3 cut(s) 28, 165, 688
SfoI GGCGCC 1 cut(s) 28
SmiMI CAYNNNNRTG 3 cut(s) 18, 21, 569
SmlI CTYRAG 2 cut(s) 764, 896
SmoI CTYRAG 2 cut(s) 764, 896
Sse9I AATT 9 cut(s) 94, 271, 292, 389, 457, 555, 604, 614, 714
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 426
SspDI GGCGCC 1 cut(s) 26
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 143, 964
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 31, 921
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 3 cut(s) 321, 479, 745
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 259
TasI AATT 9 cut(s) 94, 271, 292, 389, 457, 555, 604, 614, 714
TatI WGTACW 3 cut(s) 228, 301, 453
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 3 cut(s) 290, 732, 909
Tru9I TTAA 3 cut(s) 290, 732, 909
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 315, 575
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 2 cut(s) 315, 575
TspDTI ATGAA 1 cut(s) 903
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 1 cut(s) 324
XapI RAATTY 3 cut(s) 94, 271, 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 737
XspI CTAG 2 cut(s) 143, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.