RLG00000025790

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014137
Physical Location & Seq
Forward (+)
48295987 .. 48297144
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025790

Sequence Viewer

Length: 513 bp
ATGCAGTCTCTCACTCTCTCTCACCGTCGGAAAGTTTCACTCGCCGATCAAATCTCCGATCTTGGTTCGCCGATTCGCTCCGAACGGCCGAAAGGAATAATAACTAGAGCTATGGCTATGAGTCACGCGAAATCGTTGAGGAGCGTTATCAATTCCATGGAATTGGAAGCAGTTGGGGTATTAGTTTCCGGGCGACGAGCATTTTCTGCTAAGGCAAAGAAGGGTGGCAAAGGTGGTGCTGGTGATGCACCAAAGGCGTCAATGTTAGACAAGGAAGTTAAGTCTACGACTGTGGTTGGAGCTAATATACTCAAGGATGGGACGGATCCTAAAATCTTGCCAGATTCCGAGTACCCTGAATGGCTTTGGCATCTGATTGATAAGCGTCCTGCGTTGAGTGAACTGAGAAGGAAGAACATTGAAACTCTCCCCTACGAAGATCTCAAGCGATTTGTTAAGCTGGATAACCGGGCAAGGATCAAGGAGAACAACTCGCTAAAGGCCAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

171

Amino Acids

18.82

Weight (kDa)

10.11

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37 PF08561 90 - 167 2.9e-23 Mitochondrial ribosomal protein L37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 284
AccII CGCG 1 cut(s) 128
AclWI GGATC 3 cut(s) 320, 333, 485
AcoI YGGCCR 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 1 cut(s) 353
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 3 cut(s) 110, 302, 460
AluI AGCT 3 cut(s) 110, 302, 460
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 3 cut(s) 320, 333, 485
AoxI GGCC 2 cut(s) 86, 501
AsuC2I CCSGG 2 cut(s) 190, 470
AsuHPI GGTGA 2 cut(s) 14, 254
BamHI GGATCC 1 cut(s) 325
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 101
BcnI CCSGG 2 cut(s) 190, 470
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 105, 511
BglII AGATCT 1 cut(s) 439
Bme1390I CCNGG 2 cut(s) 190, 470
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 190, 470
BmsI GCATC 2 cut(s) 235, 379
BplI GAGNNNNNCTC 2 cut(s) 476, 508
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 2 cut(s) 296, 428
BpuMI CCSGG 2 cut(s) 190, 470
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 154
BseX3I CGGCCG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 503
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 189, 469
BslFI GGGAC 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 2 cut(s) 88, 503
Bsp143I GATC 5 cut(s) 46, 58, 325, 439, 477
Bsp19I CCATGG 1 cut(s) 156
BspANI GGCC 2 cut(s) 88, 503
BspCNI CTCAG 1 cut(s) 396
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 3 cut(s) 320, 333, 485
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 5 cut(s) 46, 58, 325, 439, 477
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 26, 292
BstACI GRCGYC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 210, 404
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 5 cut(s) 49, 61, 328, 442, 480
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 5 cut(s) 46, 58, 325, 439, 477
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 3 cut(s) 206, 245, 254
BstSCI CCNGG 2 cut(s) 188, 468
BstUI CGCG 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 325, 439
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 2 cut(s) 325, 439
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 503
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 322
CseI GACGC 2 cut(s) 246, 374
Csp6I GTAC 1 cut(s) 352
CviAII CATG 1 cut(s) 157
CviJI RGCY 7 cut(s) 88, 110, 116, 302, 364, 460, 503
CviKI_1 RGCY 7 cut(s) 88, 110, 116, 302, 364, 460, 503
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 210, 404
DpnI GATC 5 cut(s) 48, 60, 327, 441, 479
DpnII GATC 5 cut(s) 46, 58, 325, 439, 477
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 113, 119, 158, 308
FaqI GGGAC 1 cut(s) 334
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 284
FokI GGATG 1 cut(s) 329
FspBI CTAG 2 cut(s) 105, 511
HaeIII GGCC 2 cut(s) 88, 503
HapII CCGG 2 cut(s) 189, 469
HgaI GACGC 2 cut(s) 246, 374
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 160
HinfI GANTC 3 cut(s) 73, 121, 344
HpaII CCGG 2 cut(s) 189, 469
HphI GGTGA 2 cut(s) 14, 254
Hpy166II GTNNAC 2 cut(s) 285, 401
Hpy188I TCNGA 5 cut(s) 30, 58, 82, 349, 375
Hpy8I GTNNAC 2 cut(s) 285, 401
Hpy99I CGWCG 2 cut(s) 30, 198
HpyAV CCTTC 2 cut(s) 214, 402
HpyCH4III ACNGT 2 cut(s) 26, 292
HpyCH4V TGCA 2 cut(s) 4, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 245, 254
HpyF3I CTNAG 2 cut(s) 210, 404
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 5 cut(s) 46, 58, 325, 439, 477
LmnI GCTCC 3 cut(s) 83, 141, 299
LpnPI CCDG 7 cut(s) 202, 225, 354, 369, 402, 446, 482
LweI GCATC 2 cut(s) 235, 379
MaeI CTAG 2 cut(s) 105, 511
MaeIII GTNAC 1 cut(s) 122
MalI GATC 5 cut(s) 48, 60, 327, 441, 479
MboI GATC 5 cut(s) 46, 58, 325, 439, 477
MboII GAAGA 2 cut(s) 424, 449
MflI RGATCY 2 cut(s) 325, 439
MluCI AATT 2 cut(s) 151, 161
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 2 cut(s) 8, 277
MnlI CCTC 1 cut(s) 132
MseI TTAA 2 cut(s) 279, 456
MspI CCGG 2 cut(s) 189, 469
MspR9I CCNGG 2 cut(s) 190, 470
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 206, 245, 254
NciI CCSGG 2 cut(s) 190, 470
NcoI CCATGG 1 cut(s) 156
NdeII GATC 5 cut(s) 46, 58, 325, 439, 477
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 73, 344
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 2 cut(s) 325, 439
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 279, 456
Sau3AI GATC 5 cut(s) 46, 58, 325, 439, 477
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 190, 470
SetI ASST 4 cut(s) 112, 235, 304, 462
SfaNI GCATC 2 cut(s) 235, 379
SmlI CTYRAG 2 cut(s) 311, 443
SmoI CTYRAG 2 cut(s) 311, 443
Sse9I AATT 2 cut(s) 151, 161
SspMI CTAG 2 cut(s) 105, 511
StyD4I CCNGG 2 cut(s) 188, 468
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 26, 292
TasI AATT 2 cut(s) 151, 161
TfiI GAWTC 2 cut(s) 73, 344
Tru1I TTAA 2 cut(s) 279, 456
Tru9I TTAA 2 cut(s) 279, 456
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 2 cut(s) 105, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.