AT3G02380

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
487069 .. 489467
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02380.1

Sequence Viewer

Length: 1044 bp
ATGTTGAAAGAAGAGAGTAATGAGAGTGGTACTTGGGCACGAGCATGTGACACTTGTCGTTCAGCCGCCTGCACTGTCTACTGTGAAGCCGACTCTGCCTACTTGTGCACCACCTGTGATGCTCGAGTTCACGCAGCCAACCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAGTCATGTGAGTCTGCCCCAGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGTACAGCTTGTGATGCAGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAGCGAGTTCCGATTCTTCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCTGATAACGATGAGGATGATCGAGAGGTTGCTTCGTGGTTACTCCCTAATCCAGGGAAAAACATCGGTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGCTCCAGCATGGACAACCAATTCGAAGATAATCAGTACACTCACTACCAGAGGAGCTTTGGAGGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTCACCTGCAACAAAGCCAACAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAGGAGCTCACTACAACAACAACTCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCAGAGTCAACTGCAAGTGACATAACAGTCCAACACCCAAGAACTACTAAAGAGACGATAGACCAACTATCTGGTCCTCCTACTCAGGTGGTGCAACAGCTTACTCCAATGGAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAATTTGACAAGACAATAAGATATGCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCAGATTCGCAAAGAGGATAGAAACTGAAGCTGAGGCTGAAGAAATCTTCTCAACATCGCTAATGTCTGAGACTGGATATGGAATTGTCCCTTCCTTCTAA

Protein Analysis

347

Amino Acids

38.52

Weight (kDa)

5.56

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 55 - 101 1e-07 B-box zinc finger
CCT PF06203 278 - 320 8.2e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013044)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 594
AasI GACNNNNNNGTC 1 cut(s) 743
AatII GACGTC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 594
AccI GTMKAC 1 cut(s) 78
AciI CCGC 3 cut(s) 66, 264, 557
AclWI GGATC 1 cut(s) 944
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 2 cut(s) 990, 1002
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 4 cut(s) 31, 238, 458, 515
AfiI CCNNNNNNNGG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 4 cut(s) 7, 563, 569, 906
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 406
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AluBI AGCT 9 cut(s) 200, 242, 278, 330, 480, 534, 644, 817, 974
AluI AGCT 9 cut(s) 200, 242, 278, 330, 480, 534, 644, 817, 974
Alw21I GWGCWC 2 cut(s) 110, 646
Alw26I GTCTC 4 cut(s) 234, 341, 764, 1007
Alw44I GTGCAC 1 cut(s) 106
AlwI GGATC 1 cut(s) 944
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 336
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 134, 200, 224, 327
ApoI RAATTY 1 cut(s) 878
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 4 cut(s) 337, 670, 791, 844
AsuHPI GGTGA 1 cut(s) 575
AsuII TTCGAA 1 cut(s) 501
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 3 cut(s) 670, 791, 844
AxyI CCTNAGG 1 cut(s) 637
BaeGI GKGCMC 2 cut(s) 40, 110
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 875
Bbv12I GWGCWC 2 cut(s) 110, 646
BbvCI CCTCAGC 1 cut(s) 975
BbvI GCAGC 4 cut(s) 146, 187, 211, 339
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 4 cut(s) 234, 341, 764, 1007
BfaI CTAG 3 cut(s) 275, 279, 840
BfuAI ACCTGC 1 cut(s) 594
BisI GCNGC 6 cut(s) 66, 135, 201, 225, 328, 557
BlsI GCNGC 6 cut(s) 67, 136, 202, 226, 329, 558
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 3 cut(s) 670, 791, 844
BmeRI GACNNNNNGTC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 4 cut(s) 337, 670, 791, 844
BmiI GGNNCC 2 cut(s) 339, 845
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 4 cut(s) 109, 238, 343, 695
BoxI GACNNNNGTC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 875
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 333, 407, 932
BsaXI ACNNNNNCTCC 4 cut(s) 534, 564, 644, 674
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 1021
Bse21I CCTNAGG 1 cut(s) 637
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 3 cut(s) 333, 407, 932
BseGI GGATG 2 cut(s) 376, 686
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 5 cut(s) 651, 815, 839, 966, 1002
BseNI ACTGG 1 cut(s) 1021
BseRI GAGGAG 3 cut(s) 544, 555, 625
BseSI GKGCMC 2 cut(s) 40, 110
BseXI GCAGC 4 cut(s) 146, 187, 211, 339
BseYI CCCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 110, 646
BsiHKCI CYCGRG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 4 cut(s) 234, 341, 764, 1007
BsmBI CGTCTC 2 cut(s) 234, 764
BsmFI GGGAC 1 cut(s) 1016
BsnI GGCC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 3 cut(s) 40, 110, 646
Bsp1407I TGTACA 1 cut(s) 236
Bsp143I GATC 3 cut(s) 373, 463, 936
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 66, 264, 557
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 5 cut(s) 650, 814, 840, 967, 1003
BspLI GGNNCC 2 cut(s) 339, 845
BspMI ACCTGC 1 cut(s) 594
BspPI GGATC 1 cut(s) 944
BspT104I TTCGAA 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 236
BsrI ACTGG 1 cut(s) 1021
BssECI CCNNGG 3 cut(s) 333, 407, 932
BssMI GATC 3 cut(s) 373, 463, 936
BssNI GRCGYC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 4 cut(s) 76, 83, 143, 745
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 224
BstAUI TGTACA 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 5 cut(s) 637, 801, 848, 975, 1011
BstDSI CCRYGG 2 cut(s) 333, 932
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 376, 686
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 3 cut(s) 376, 466, 939
BstMAI GTCTC 4 cut(s) 234, 341, 764, 1007
BstMBI GATC 3 cut(s) 373, 463, 936
BstMWI GCNNNNNNNGC 4 cut(s) 95, 200, 224, 248
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 48
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 406
BstSLI GKGCMC 2 cut(s) 40, 110
BstV1I GCAGC 4 cut(s) 146, 187, 211, 339
BstV2I GAAGAC 1 cut(s) 875
BstXI CCANNNNNNTGG 1 cut(s) 788
Bsu36I CCTNAGG 1 cut(s) 637
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 2 cut(s) 333, 932
BtgZI GCGATG 1 cut(s) 984
BtsCI GGATG 2 cut(s) 376, 686
BtsIMutI CAGTG 2 cut(s) 72, 715
BveI ACCTGC 1 cut(s) 594
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 224
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 4 cut(s) 337, 670, 791, 844
CseI GACGC 2 cut(s) 216, 230
Csp6I GTAC 4 cut(s) 30, 237, 457, 514
CviAII CATG 5 cut(s) 45, 158, 183, 334, 487
CviQI GTAC 4 cut(s) 30, 237, 457, 514
DdeI CTNAG 5 cut(s) 637, 801, 848, 975, 1011
DpnI GATC 3 cut(s) 375, 465, 938
DpnII GATC 3 cut(s) 373, 463, 936
DrdI GACNNNNNNGTC 1 cut(s) 743
DriI GACNNNNNGTC 1 cut(s) 226
DseDI GACNNNNNNGTC 1 cut(s) 743
Eam1104I CTCTTC 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 3 cut(s) 670, 791, 844
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 990, 1002
Eco81I CCTNAGG 1 cut(s) 637
Eco88I CYCGRG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 644
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 2 cut(s) 670, 844
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 2 cut(s) 234, 764
FaeI CATG 5 cut(s) 48, 161, 186, 337, 490
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FaqI GGGAC 1 cut(s) 1016
FatI CATG 5 cut(s) 44, 157, 182, 333, 486
FauNDI CATATG 1 cut(s) 916
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 6 cut(s) 66, 135, 201, 225, 328, 557
FokI GGATG 2 cut(s) 383, 673
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 6 cut(s) 66, 135, 201, 225, 328, 557
FspBI CTAG 3 cut(s) 275, 279, 840
GlaI GCGC 1 cut(s) 685
GluI GCNGC 6 cut(s) 66, 135, 201, 225, 328, 557
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 1 cut(s) 338
HgaI GACGC 2 cut(s) 216, 230
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 5 cut(s) 48, 161, 186, 337, 490
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 8 cut(s) 92, 188, 256, 301, 572, 630, 722, 948
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 5 cut(s) 79, 108, 130, 516, 726
Hpy188I TCNGA 3 cut(s) 300, 429, 1012
Hpy188III TCNNGA 4 cut(s) 377, 639, 847, 906
Hpy8I GTNNAC 5 cut(s) 79, 108, 130, 516, 726
HpyAV CCTTC 1 cut(s) 1044
HpyCH4III ACNGT 4 cut(s) 76, 83, 143, 745
HpyCH4IV ACGT 2 cut(s) 163, 283
HpyCH4V TGCA 9 cut(s) 72, 108, 251, 317, 327, 589, 731, 811, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 200, 224, 248
HpyF3I CTNAG 5 cut(s) 637, 801, 848, 975, 1011
HpySE526I ACGT 2 cut(s) 163, 283
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 5 cut(s) 48, 161, 186, 337, 490
HspAI GCGC 1 cut(s) 684
Kzo9I GATC 3 cut(s) 373, 463, 936
LmnI GCTCC 4 cut(s) 335, 485, 531, 641
Lsp1109I GCAGC 4 cut(s) 146, 187, 211, 339
LweI GCATC 4 cut(s) 109, 238, 343, 695
MaeI CTAG 3 cut(s) 275, 279, 840
MaeII ACGT 2 cut(s) 163, 283
MaeIII GTNAC 4 cut(s) 47, 393, 581, 734
MalI GATC 3 cut(s) 375, 465, 938
MboI GATC 3 cut(s) 373, 463, 936
MboII GAAGA 9 cut(s) 23, 296, 515, 581, 874, 877, 880, 982, 995
MhlI GDGCHC 3 cut(s) 40, 110, 646
MluCI AATT 3 cut(s) 497, 878, 1026
MlyI GAGTC 3 cut(s) 86, 197, 731
MmeI TCCRAC 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 665
MslI CAYNNNNRTG 2 cut(s) 43, 162
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 4 cut(s) 95, 200, 224, 248
NcoI CCATGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 916
NdeII GATC 3 cut(s) 373, 463, 936
NlaIII CATG 5 cut(s) 48, 161, 186, 337, 490
NlaIV GGNNCC 2 cut(s) 339, 845
NmuCI GTSAC 3 cut(s) 47, 581, 734
NspI RCATGY 1 cut(s) 48
NspV TTCGAA 1 cut(s) 501
PaeR7I CTCGAG 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 594
PcsI WCGNNNNNNNCGW 2 cut(s) 160, 289
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 5 cut(s) 256, 301, 572, 630, 948
PkrI GCNGC 6 cut(s) 67, 136, 202, 226, 329, 558
PleI GAGTC 3 cut(s) 86, 196, 730
PpsI GAGTC 3 cut(s) 86, 196, 730
PpuMI RGGWCCY 2 cut(s) 670, 844
PshAI GACNNNNGTC 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 646
Psp5II RGGWCCY 2 cut(s) 670, 844
Psp6I CCWGG 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 339, 845
PspPI GGNCC 4 cut(s) 337, 670, 791, 844
PspPPI RGGWCCY 2 cut(s) 670, 844
PspXI VCTCGAGB 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 4 cut(s) 31, 238, 458, 515
RsaNI GTAC 4 cut(s) 30, 237, 457, 514
RseI CAYNNNNRTG 2 cut(s) 43, 162
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 6 cut(s) 66, 135, 201, 225, 328, 557
Sau3AI GATC 3 cut(s) 373, 463, 936
Sau96I GGNCC 4 cut(s) 337, 670, 791, 844
SchI GAGTC 3 cut(s) 86, 197, 731
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 3 cut(s) 40, 110, 646
SfaNI GCATC 4 cut(s) 109, 238, 343, 695
Sfr274I CTCGAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 501
SinI GGWCC 3 cut(s) 670, 791, 844
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 43, 162
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 497, 878, 1026
SsiI CCGC 3 cut(s) 66, 264, 557
SspMI CTAG 3 cut(s) 275, 279, 840
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 76, 83, 143, 745
TaiI ACGT 2 cut(s) 166, 286
TaqI TCGA 3 cut(s) 124, 376, 501
TasI AATT 3 cut(s) 497, 878, 1026
TatI WGTACW 2 cut(s) 236, 513
TauI GCSGC 2 cut(s) 68, 559
TfiI GAWTC 5 cut(s) 256, 301, 572, 630, 948
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TscAI CASTG 2 cut(s) 79, 715
TseFI GTSAC 3 cut(s) 47, 581, 734
TseI GCWGC 4 cut(s) 134, 200, 224, 327
Tsp45I GTSAC 3 cut(s) 47, 581, 734
TspDTI ATGAA 3 cut(s) 174, 248, 684
TspGWI ACGGA 2 cut(s) 679, 949
TspRI CASTG 2 cut(s) 79, 715
VneI GTGCAC 1 cut(s) 106
VpaK11BI GGWCC 3 cut(s) 670, 791, 844
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 1 cut(s) 878
XceI RCATGY 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 3 cut(s) 275, 279, 840
ZraI GACGTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.