Rw2G047550

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
74830581 .. 74832714
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047550.1

Sequence Viewer

Length: 1191 bp
ATGTTGTTGAAGGAAGAGAGCAATGGCGCCGCGGCCGCGAACAGCTGGGCACGTGTTTGCGACACCTGCCGCTCCGCCCCCTGCACGGTCTATTGCCGTGCAGACTCGGCGTACTTATGTTCCGACTGCGACGCCACAATCCACGCGGCCAACCGCGTGGCTTCCCGCCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAGCGTGCGCCGGCCGCCTTTCTCTGTAAGGCCGACGCAGCCTCGCTCTGCACGGCCTGTGACGCAGACATCCACTCCGCCAACCCTTTGGCCCGTCGCCACCAGCGCGTCCCCATACTCCCCATCTCCGGCTTCCTCCACGGACCAACGGCCACGGACCCCGGCGGTCAGATAATGGTTGGGGCTGCTCCGGCGGATACCACCGAGGACGGGTTCCTGAGCCAGGAAGGAGATGAGGCCATGGACGAAGAAGATGAAGATGAGGCTGCGTCCTGGCTGCTGCTGAATCCGGTGAAGAACAGCAACGGCAACCATAACAGTAACAACAATCCAAATAATAACAACAGCGGATTCTTCTTCGGAGTGGAGGTTGATGAGTACTTGGATTTTGTGGAGTACAACTCATCTGATCAGAACCAGCTCAGTACGACTACTGCTAGTACTGACCAGCATAACCAGTATGGTGTGCCGCACAAGAACAGTTATGGAGGTGATAGTGTTGTACCAGTTCAGTATGGAGAAGGTAAAGTAAACCAGATGCAGATGCAGCAGAAGCATAATTTTCATCAGTTGGGGATGGAATATGAGTCCTCAAAAGCTGCTTATGGTTATGATGGTTCAATTTCTCACACTGTTTCTGTTTCATCCATGGATGTTGGTGTTGTACCAGACTCAACAATGAGCGATATGTCAATCTCTCACCCAAGAACACCGAAAGGAACAATAGACCTTTTCAATGGACCTACAATTCAGATGCCAACCCAACTAAGCCCAATGGACAGGGAGGCCAGGGTCCTCAGATACAGAGAGAAAAAGAAGACGAGGAAGTTTGAGAAAACAATCCGGTATGCCTCAAGGAAGGCCTATGCAGAGACCAGACCCCGGATCAAGGGCCGGTTTGCAAAGCGAACAGACATCGAAGTTGAAGTGGATCAGATGTTCTCCACATCTCTTATAGGAGAAACTGGATACGGCATTGTCCCTTCGTACTAA

Protein Analysis

396

Amino Acids

43.54

Weight (kDa)

5.33

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 59 - 105 1.5e-07 B-box zinc finger
CCT PF06203 327 - 369 8.4e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013044)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 72
AccII CGCG 6 cut(s) 32, 38, 146, 156, 177, 306
AclWI GGATC 2 cut(s) 1091, 1137
AcoI YGGCCR 4 cut(s) 33, 147, 210, 348
AcvI CACGTG 1 cut(s) 53
AcyI GRCGYC 2 cut(s) 27, 132
AfaI GTAC 8 cut(s) 113, 578, 596, 625, 640, 702, 864, 1187
AfiI CCNNNNNNNGG 6 cut(s) 85, 326, 408, 421, 1080, 1087
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 4 cut(s) 10, 819, 934, 1124
AjnI CCWGG 3 cut(s) 420, 470, 986
AloI GAACNNNNNNTCC 2 cut(s) 1121, 1153
AluBI AGCT 3 cut(s) 45, 619, 797
AluI AGCT 3 cut(s) 45, 619, 797
Alw26I GTCTC 1 cut(s) 1064
AlwI GGATC 2 cut(s) 1091, 1137
ApeKI GCWGC 7 cut(s) 236, 383, 464, 475, 478, 745, 797
AspLEI GCGC 4 cut(s) 29, 177, 208, 306
AspS9I GGNCC 6 cut(s) 289, 341, 355, 938, 991, 1090
AsuC2I CCSGG 2 cut(s) 360, 1081
AsuHPI GGTGA 3 cut(s) 502, 701, 890
AvaII GGWCC 4 cut(s) 341, 355, 938, 991
BaeGI GKGCMC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 26
BauI CACGAG 1 cut(s) 170
BbrPI CACGTG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 1022
BbvI GCAGC 7 cut(s) 248, 370, 451, 462, 465, 757, 784
BccI CCATC 3 cut(s) 329, 769, 806
BceAI ACGGC 5 cut(s) 81, 267, 363, 520, 1186
BciT130I CCWGG 3 cut(s) 422, 472, 988
BciVI GTATCC 2 cut(s) 388, 1160
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 2 cut(s) 360, 1081
BcoDI GTCTC 1 cut(s) 1064
BfaI CTAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 74
BfuI GTATCC 2 cut(s) 388, 1160
BmcAI AGTACT 2 cut(s) 578, 640
Bme1390I CCNGG 5 cut(s) 360, 422, 472, 988, 1081
Bme18I GGWCC 4 cut(s) 341, 355, 938, 991
BmgT120I GGNCC 6 cut(s) 289, 341, 355, 938, 991, 1090
BmiI GGNNCC 4 cut(s) 28, 357, 413, 992
BmrFI CCNGG 5 cut(s) 360, 422, 472, 988, 1081
BmsI GCATC 3 cut(s) 726, 732, 942
BpiI GAAGAC 1 cut(s) 1022
BplI GAGNNNNNCTC 2 cut(s) 584, 616
Bpu10I CCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 1036
BpuMI CCSGG 2 cut(s) 360, 1081
BsaAI YACGTR 1 cut(s) 53
BsaHI GRCGYC 2 cut(s) 27, 132
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 9 cut(s) 30, 337, 351, 358, 402, 438, 846, 987, 1079
BsaWI WCCGGW 2 cut(s) 487, 1041
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 552, 582
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 326, 408, 421, 1080, 1087
Bse118I RCCGGY 2 cut(s) 208, 1092
Bse1I ACTGG 3 cut(s) 655, 704, 1168
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 3 cut(s) 422, 472, 988
BseDI CCNNGG 9 cut(s) 30, 337, 351, 358, 402, 438, 846, 987, 1079
BseGI GGATG 4 cut(s) 267, 780, 842, 856
BseLI CCNNNNNNNGG 6 cut(s) 85, 326, 408, 421, 1080, 1087
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 407, 634, 1009
BseNI ACTGG 3 cut(s) 655, 704, 1168
BseSI GKGCMC 1 cut(s) 52
BseX3I CGGCCG 2 cut(s) 33, 210
BseXI GCAGC 7 cut(s) 248, 370, 451, 462, 465, 757, 784
BseYI CCCAGC 1 cut(s) 45
BsgI GTGCAG 3 cut(s) 67, 120, 232
Bsh1236I CGCG 6 cut(s) 32, 38, 146, 156, 177, 306
Bsh1285I CGRYCG 2 cut(s) 36, 213
BshNI GGYRCC 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 36, 213
BsiSI CCGG 8 cut(s) 209, 327, 360, 389, 488, 1042, 1081, 1093
BslFI GGGAC 2 cut(s) 293, 1163
BslI CCNNNNNNNGG 6 cut(s) 85, 326, 408, 421, 1080, 1087
BsmAI GTCTC 1 cut(s) 1064
BsmFI GGGAC 2 cut(s) 293, 1163
Bso31I GGTCTC 1 cut(s) 1064
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 607, 1083, 1129
Bsp19I CCATGG 2 cut(s) 438, 846
BspCNI CTCAG 3 cut(s) 408, 633, 1008
BspFNI CGCG 6 cut(s) 32, 38, 146, 156, 177, 306
BspLI GGNNCC 4 cut(s) 28, 357, 413, 992
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 2 cut(s) 1091, 1137
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 1064
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 2 cut(s) 208, 1092
BsrI ACTGG 3 cut(s) 655, 704, 1168
BssAI RCCGGY 2 cut(s) 208, 1092
BssECI CCNNGG 9 cut(s) 30, 337, 351, 358, 402, 438, 846, 987, 1079
BssMI GATC 3 cut(s) 607, 1083, 1129
BssNI GRCGYC 2 cut(s) 27, 132
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 438, 846
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 3 cut(s) 422, 472, 988
Bst4CI ACNGT 4 cut(s) 88, 518, 680, 832
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 2 cut(s) 27, 132
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 4 cut(s) 196, 200, 204, 210
BstDEI CTNAG 4 cut(s) 416, 620, 965, 995
BstDSI CCRYGG 5 cut(s) 30, 337, 351, 438, 846
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 4 cut(s) 267, 780, 842, 856
BstFNI CGCG 6 cut(s) 32, 38, 146, 156, 177, 306
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 4 cut(s) 29, 177, 208, 306
BstKTI GATC 3 cut(s) 610, 1086, 1132
BstMAI GTCTC 1 cut(s) 1064
BstMBI GATC 3 cut(s) 607, 1083, 1129
BstMCI CGRYCG 2 cut(s) 36, 213
BstNI CCWGG 3 cut(s) 422, 472, 988
BstSCI CCNGG 5 cut(s) 358, 420, 470, 986, 1079
BstSLI GKGCMC 1 cut(s) 52
BstUI CGCG 6 cut(s) 32, 38, 146, 156, 177, 306
BstV1I GCAGC 7 cut(s) 248, 370, 451, 462, 465, 757, 784
BstV2I GAAGAC 1 cut(s) 1022
BstXI CCANNNNNNTGG 2 cut(s) 157, 286
BstZI CGGCCG 2 cut(s) 33, 210
BsuI GTATCC 2 cut(s) 388, 1160
BtgI CCRYGG 5 cut(s) 30, 337, 351, 438, 846
BtsCI GGATG 4 cut(s) 267, 780, 842, 856
BtsIMutI CAGTG 1 cut(s) 828
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 4 cut(s) 196, 200, 204, 210
CciNI GCGGCCGC 1 cut(s) 33
CfoI GCGC 4 cut(s) 29, 177, 208, 306
Cfr10I RCCGGY 2 cut(s) 208, 1092
Cfr13I GGNCC 6 cut(s) 289, 341, 355, 938, 991, 1090
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 5 cut(s) 140, 242, 269, 295, 456
Csp6I GTAC 8 cut(s) 112, 577, 595, 624, 639, 701, 863, 1186
CviAII CATG 2 cut(s) 439, 847
CviQI GTAC 8 cut(s) 112, 577, 595, 624, 639, 701, 863, 1186
DdeI CTNAG 4 cut(s) 416, 620, 965, 995
DinI GGCGCC 1 cut(s) 28
DpnI GATC 3 cut(s) 609, 1085, 1131
DpnII GATC 3 cut(s) 607, 1083, 1129
EaeI YGGCCR 4 cut(s) 33, 147, 210, 348
EagI CGGCCG 2 cut(s) 33, 210
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 3 cut(s) 64, 265, 407
EclXI CGGCCG 2 cut(s) 33, 210
Eco130I CCWWGG 2 cut(s) 438, 846
Eco147I AGGCCT 2 cut(s) 194, 1061
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 4 cut(s) 341, 355, 938, 991
Eco52I CGGCCG 2 cut(s) 33, 210
Eco72I CACGTG 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 991
EcoRII CCWGG 3 cut(s) 420, 470, 986
EcoT14I CCWWGG 2 cut(s) 438, 846
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
ErhI CCWWGG 2 cut(s) 438, 846
FaeI CATG 2 cut(s) 442, 850
FaqI GGGAC 2 cut(s) 293, 1163
FatI CATG 2 cut(s) 438, 846
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 1 cut(s) 607
FokI GGATG 4 cut(s) 254, 787, 829, 863
FspBI CTAG 1 cut(s) 636
GlaI GCGC 4 cut(s) 28, 176, 207, 305
GsaI CCCAGC 1 cut(s) 49
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 8 cut(s) 209, 327, 360, 389, 488, 1042, 1081, 1093
HgaI GACGC 5 cut(s) 140, 242, 269, 295, 456
HhaI GCGC 4 cut(s) 29, 177, 208, 306
Hin1I GRCGYC 2 cut(s) 27, 132
Hin1II CATG 2 cut(s) 442, 850
Hin6I GCGC 4 cut(s) 27, 175, 206, 304
HinP1I GCGC 4 cut(s) 27, 175, 206, 304
HinfI GANTC 5 cut(s) 104, 484, 549, 785, 869
HpaII CCGG 8 cut(s) 209, 327, 360, 389, 488, 1042, 1081, 1093
HphI GGTGA 3 cut(s) 502, 701, 890
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 8 cut(s) 124, 369, 560, 607, 612, 951, 998, 1134
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 3 cut(s) 134, 236, 297
HpyAV CCTTC 5 cut(s) 4, 419, 713, 1051, 1191
HpyCH4III ACNGT 4 cut(s) 88, 518, 680, 832
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 7 cut(s) 84, 101, 249, 739, 745, 1067, 1100
HpyF3I CTNAG 4 cut(s) 416, 620, 965, 995
HpySE526I ACGT 1 cut(s) 52
Hsp92I GRCGYC 2 cut(s) 27, 132
Hsp92II CATG 2 cut(s) 442, 850
HspAI GCGC 4 cut(s) 27, 175, 206, 304
KasI GGCGCC 1 cut(s) 26
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 607
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 607, 1083, 1129
LmnI GCTCC 2 cut(s) 77, 391
Lsp1109I GCAGC 7 cut(s) 248, 370, 451, 462, 465, 757, 784
LweI GCATC 3 cut(s) 726, 732, 942
MaeI CTAG 1 cut(s) 636
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 257, 518
MalI GATC 3 cut(s) 609, 1085, 1131
MbiI CCGCTC 1 cut(s) 72
MboI GATC 3 cut(s) 607, 1083, 1129
MboII GAAGA 8 cut(s) 26, 458, 461, 467, 505, 544, 547, 1027
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 757, 819, 945
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 3 cut(s) 98, 794, 863
MmeI TCCRAC 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 208
MspA1I CMGCKG 3 cut(s) 32, 45, 546
MspI CCGG 8 cut(s) 209, 327, 360, 389, 488, 1042, 1081, 1093
MspR9I CCNGG 5 cut(s) 360, 422, 472, 988, 1081
MvaI CCWGG 3 cut(s) 422, 472, 988
MvnI CGCG 6 cut(s) 32, 38, 146, 156, 177, 306
NaeI GCCGGC 1 cut(s) 210
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 2 cut(s) 360, 1081
NcoI CCATGG 2 cut(s) 438, 846
NdeII GATC 3 cut(s) 607, 1083, 1129
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 2 cut(s) 442, 850
NlaIV GGNNCC 4 cut(s) 28, 357, 413, 992
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 257
NotI GCGGCCGC 1 cut(s) 33
PaqCI CACCTGC 1 cut(s) 74
PceI AGGCCT 2 cut(s) 194, 1061
PdiI GCCGGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 484, 549
PleI GAGTC 3 cut(s) 98, 793, 863
PluTI GGCGCC 1 cut(s) 30
PmaCI CACGTG 1 cut(s) 53
PmlI CACGTG 1 cut(s) 53
PpsI GAGTC 3 cut(s) 98, 793, 863
Ppu21I YACGTR 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 991
Psp5II RGGWCCY 1 cut(s) 991
Psp6I CCWGG 3 cut(s) 420, 470, 986
PspCI CACGTG 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 3 cut(s) 420, 470, 986
PspN4I GGNNCC 4 cut(s) 28, 357, 413, 992
PspPI GGNCC 6 cut(s) 289, 341, 355, 938, 991, 1090
PspPPI RGGWCCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 8 cut(s) 113, 578, 596, 625, 640, 702, 864, 1187
RsaNI GTAC 8 cut(s) 112, 577, 595, 624, 639, 701, 863, 1186
SacII CCGCGG 1 cut(s) 33
Sau3AI GATC 3 cut(s) 607, 1083, 1129
Sau96I GGNCC 6 cut(s) 289, 341, 355, 938, 991, 1090
ScaI AGTACT 2 cut(s) 578, 640
SchI GAGTC 3 cut(s) 98, 794, 863
ScrFI CCNGG 5 cut(s) 360, 422, 472, 988, 1081
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 3 cut(s) 726, 732, 942
SfoI GGCGCC 1 cut(s) 28
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 4 cut(s) 341, 355, 938, 991
SmlI CTYRAG 1 cut(s) 1051
SmoI CTYRAG 1 cut(s) 1051
Sse9I AATT 3 cut(s) 757, 819, 945
SseBI AGGCCT 2 cut(s) 194, 1061
SspDI GGCGCC 1 cut(s) 26
SspMI CTAG 1 cut(s) 636
StuI AGGCCT 2 cut(s) 194, 1061
StyD4I CCNGG 5 cut(s) 358, 420, 470, 986, 1079
StyI CCWWGG 2 cut(s) 438, 846
TaaI ACNGT 4 cut(s) 88, 518, 680, 832
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 1116
TasI AATT 3 cut(s) 757, 819, 945
TatI WGTACW 3 cut(s) 576, 594, 638
TauI GCSGC 7 cut(s) 32, 35, 38, 72, 149, 215, 670
TfiI GAWTC 2 cut(s) 484, 549
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 7 cut(s) 236, 383, 464, 475, 478, 745, 797
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 468, 752, 831
TspGWI ACGGA 2 cut(s) 354, 368
TspRI CASTG 1 cut(s) 835
VpaK11BI GGWCC 4 cut(s) 341, 355, 938, 991
XagI CCTNNNNNAGG 1 cut(s) 419
XspI CTAG 1 cut(s) 636
ZrmI AGTACT 2 cut(s) 578, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.