FvH4_6g45860

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
35108088 .. 35110508
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45860.t1

Sequence Viewer

Length: 1158 bp
ATGTTGAAAGAAGAGAGCAATGGCGCCGCGGCCGCGAACAGCTGGGCACGTGTCTGCGACACGTGCCGCTCCGCGCCCTGCACGGTCTACTGCCGTGCAGACTCCGCGTACCTCTGTTCCGGCTGCGACGCCACCATCCACGCGGCCAACCGCGTGGCGTCGCGCCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAGCGTGCGCCGGCCGCTTTACTCTGCAAGGCCGACGCGGCGTCGCTCTGCACGGCCTGCGACGCAGACATCCACTCCGCCAACCCTCTGGCGCGTCGCCACCAGCGCGTCCCCATCCTCCCCATCTCCGGCGGTCAGATAGTGGTGGGGTCCACTCCGGCGGATACAACCGAGGACGGGTTCCTGAGCCAGGAAGGAGACGAGGAGGCCATGGATGAAGAAGACGAAGACGAGGCTGCTTCCTGGCTGCTGCTGAATCCTGTGAAGAACAGCAATAGCCACAACAGTAACAACAACAACAATCCGAACAGTAACAACAACGGATTCTTCTTCGGAGTGGAGGTTGATGAGTACTTGGACCTTGTGGAGTACAACTCATCTGATCAGAACCAGTTCAGTGGTACTACTGCTACTAATGACCAGCATAGCTATGGTGTGCCGCACAAGATCAGTTATGGAGGTGATAGTGTTGTACCGGTTCAGTATGGAGAAGGTAAAGTGACCCAGATGCAGATGCAGCAGAAGCATAATTTTCATCAGTTGGGGATGGAATATGAGTCCTCAAAAGCTGCTTATGGTTATGATGGTTCCATTTCTCACACTGTTTCTGTTTCATCCATGGATGTTGGAGTTGTACCAGACTCAACAATGAGTGAAATGTCTGTCTGTCACCCAAGAACACCGAAAGGAACAATAGACCTTTTTAATGGACCTACAATTCAGATTCCAACCCAACTAAGTCCTATGGACAGGGAGGCCAGGGTCCTCAGATACAGAGAGAAAAAGAAGACGAGGAAGTTTGAGAAAACAATCCGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGGATCAAGGGCCGGTTTGCAAAGCGAACAGACATCGACGTTGAAGTGGATCAGATGTTCTCCACATCACTTATGGGAGAAACTGGATACGGCATTGTTCCTTCATACTAA

Protein Analysis

386

Amino Acids

42.35

Weight (kDa)

5.35

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 58 - 104 2.5e-07 B-box zinc finger
CCT PF06203 316 - 358 8.1e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013044)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 87
AclWI GGATC 2 cut(s) 1058, 1104
AcoI YGGCCR 3 cut(s) 30, 144, 207
AcvI CACGTG 2 cut(s) 50, 63
AcyI GRCGYC 4 cut(s) 24, 129, 158, 236
AfaI GTAC 6 cut(s) 110, 548, 566, 598, 669, 831
AfiI CCNNNNNNNGG 4 cut(s) 323, 372, 385, 1054
AflIII ACRYGT 2 cut(s) 49, 60
AgeI ACCGGT 1 cut(s) 670
AgsI TTSAA 2 cut(s) 7, 1091
AhdI GACNNNNNGTC 1 cut(s) 235
AjnI CCWGG 3 cut(s) 384, 437, 953
AloI GAACNNNNNNTCC 2 cut(s) 1088, 1120
AluBI AGCT 3 cut(s) 42, 624, 764
AluI AGCT 3 cut(s) 42, 624, 764
Alw26I GTCTC 2 cut(s) 387, 1031
AlwI GGATC 2 cut(s) 1058, 1104
ApeKI GCWGC 6 cut(s) 123, 431, 442, 445, 712, 764
AsiGI ACCGGT 1 cut(s) 670
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 7 cut(s) 26, 76, 165, 174, 205, 289, 303
AspS9I GGNCC 5 cut(s) 345, 553, 905, 958, 1057
AsuC2I CCSGG 1 cut(s) 1048
AsuHPI GGTGA 2 cut(s) 668, 857
AvaII GGWCC 4 cut(s) 345, 553, 905, 958
BaeGI GKGCMC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 23
BauI CACGAG 1 cut(s) 167
BbrPI CACGTG 2 cut(s) 50, 63
BbsI GAAGAC 3 cut(s) 423, 429, 989
BbvI GCAGC 6 cut(s) 110, 418, 429, 432, 724, 751
BccI CCATC 5 cut(s) 143, 317, 326, 736, 773
BceAI ACGGC 3 cut(s) 78, 264, 1153
BciT130I CCWGG 3 cut(s) 386, 439, 955
BciVI GTATCC 2 cut(s) 352, 1127
BclI TGATCA 1 cut(s) 577
BcnI CCSGG 1 cut(s) 1048
BcoDI GTCTC 2 cut(s) 387, 1031
BfaI CTAG 1 cut(s) 1041
BfoI RGCGCY 1 cut(s) 27
BfuI GTATCC 2 cut(s) 352, 1127
BglI GCCNNNNNGGC 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 4 cut(s) 386, 439, 955, 1048
Bme18I GGWCC 4 cut(s) 345, 553, 905, 958
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgT120I GGNCC 5 cut(s) 345, 553, 905, 958, 1057
BmiI GGNNCC 5 cut(s) 25, 346, 377, 784, 959
BmrFI CCNGG 4 cut(s) 386, 439, 955, 1048
BmsI GCATC 2 cut(s) 693, 699
BpiI GAAGAC 3 cut(s) 423, 429, 989
BplI GAGNNNNNCTC 2 cut(s) 554, 586
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 1003
BpuMI CCSGG 1 cut(s) 1048
BsaAI YACGTR 2 cut(s) 50, 63
BsaHI GRCGYC 4 cut(s) 24, 129, 158, 236
BsaJI CCNNGG 6 cut(s) 27, 366, 405, 813, 954, 1046
BsaWI WCCGGW 2 cut(s) 670, 1008
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 522, 552
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 372, 385, 1054
Bse118I RCCGGY 3 cut(s) 205, 670, 1059
Bse1I ACTGG 2 cut(s) 586, 1135
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 386, 439, 955
BseDI CCNNGG 6 cut(s) 27, 366, 405, 813, 954, 1046
BseGI GGATG 7 cut(s) 135, 264, 309, 415, 747, 809, 823
BseLI CCNNNNNNNGG 4 cut(s) 323, 372, 385, 1054
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 371, 976
BseNI ACTGG 2 cut(s) 586, 1135
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 49
BseX3I CGGCCG 2 cut(s) 30, 207
BseXI GCAGC 6 cut(s) 110, 418, 429, 432, 724, 751
BseYI CCCAGC 1 cut(s) 42
BsgI GTGCAG 3 cut(s) 64, 117, 229
Bsh1285I CGRYCG 2 cut(s) 33, 210
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 670
BsiEI CGRYCG 2 cut(s) 33, 210
BsiSI CCGG 8 cut(s) 120, 206, 324, 353, 671, 1009, 1048, 1060
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 4 cut(s) 323, 372, 385, 1054
BsmAI GTCTC 2 cut(s) 387, 1031
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 577, 642, 1050, 1096
Bsp19I CCATGG 2 cut(s) 405, 813
BspCNI CTCAG 2 cut(s) 372, 975
BspLI GGNNCC 5 cut(s) 25, 346, 377, 784, 959
BspPI GGATC 2 cut(s) 1058, 1104
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 3 cut(s) 205, 670, 1059
BsrI ACTGG 2 cut(s) 586, 1135
BssAI RCCGGY 3 cut(s) 205, 670, 1059
BssECI CCNNGG 6 cut(s) 27, 366, 405, 813, 954, 1046
BssMI GATC 4 cut(s) 577, 642, 1050, 1096
BssNI GRCGYC 4 cut(s) 24, 129, 158, 236
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 405, 813
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 386, 439, 955
Bst4CI ACNGT 4 cut(s) 85, 482, 506, 799
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 4 cut(s) 24, 129, 158, 236
BstAPI GCANNNNNTGC 1 cut(s) 252
BstBAI YACGTR 2 cut(s) 50, 63
BstC8I GCNNGC 5 cut(s) 193, 197, 201, 207, 253
BstDEI CTNAG 3 cut(s) 380, 932, 962
BstDSI CCRYGG 3 cut(s) 27, 405, 813
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 7 cut(s) 135, 264, 309, 415, 747, 809, 823
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 7 cut(s) 26, 76, 165, 174, 205, 289, 303
BstKTI GATC 4 cut(s) 580, 645, 1053, 1099
BstMAI GTCTC 2 cut(s) 387, 1031
BstMBI GATC 4 cut(s) 577, 642, 1050, 1096
BstMCI CGRYCG 2 cut(s) 33, 210
BstNI CCWGG 3 cut(s) 386, 439, 955
BstSCI CCNGG 4 cut(s) 384, 437, 953, 1046
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 6 cut(s) 110, 418, 429, 432, 724, 751
BstV2I GAAGAC 3 cut(s) 423, 429, 989
BstXI CCANNNNNNTGG 3 cut(s) 154, 283, 593
BstZI CGGCCG 2 cut(s) 30, 207
BsuI GTATCC 2 cut(s) 352, 1127
BtgI CCRYGG 3 cut(s) 27, 405, 813
BtsCI GGATG 7 cut(s) 135, 264, 309, 415, 747, 809, 823
BtsIMutI CAGTG 2 cut(s) 598, 795
Cac8I GCNNGC 5 cut(s) 193, 197, 201, 207, 253
CciNI GCGGCCGC 1 cut(s) 30
CfoI GCGC 7 cut(s) 26, 76, 165, 174, 205, 289, 303
Cfr10I RCCGGY 3 cut(s) 205, 670, 1059
Cfr13I GGNCC 5 cut(s) 345, 553, 905, 958, 1057
Cfr42I CCGCGG 1 cut(s) 30
CseI GACGC 7 cut(s) 137, 147, 225, 239, 266, 278, 292
Csp6I GTAC 6 cut(s) 109, 547, 565, 597, 668, 830
CspAI ACCGGT 1 cut(s) 670
CviAII CATG 2 cut(s) 406, 814
CviQI GTAC 6 cut(s) 109, 547, 565, 597, 668, 830
DdeI CTNAG 3 cut(s) 380, 932, 962
DinI GGCGCC 1 cut(s) 25
DpnI GATC 4 cut(s) 579, 644, 1052, 1098
DpnII GATC 4 cut(s) 577, 642, 1050, 1096
DriI GACNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 3 cut(s) 30, 144, 207
EagI CGGCCG 2 cut(s) 30, 207
Eam1104I CTCTTC 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 2 cut(s) 262, 371
EclXI CGGCCG 2 cut(s) 30, 207
Eco130I CCWWGG 2 cut(s) 405, 813
Eco147I AGGCCT 2 cut(s) 191, 1028
Eco47I GGWCC 4 cut(s) 345, 553, 905, 958
Eco52I CGGCCG 2 cut(s) 30, 207
Eco72I CACGTG 2 cut(s) 50, 63
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 958
EcoRII CCWGG 3 cut(s) 384, 437, 953
EcoT14I CCWWGG 2 cut(s) 405, 813
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 405, 813
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 2 cut(s) 409, 817
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 405, 813
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 1 cut(s) 87
FokI GGATG 7 cut(s) 122, 251, 296, 422, 754, 796, 830
FspBI CTAG 1 cut(s) 1041
GlaI GCGC 7 cut(s) 25, 75, 164, 173, 204, 288, 302
GsaI CCCAGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 8 cut(s) 120, 206, 324, 353, 671, 1009, 1048, 1060
HgaI GACGC 7 cut(s) 137, 147, 225, 239, 266, 278, 292
HhaI GCGC 7 cut(s) 26, 76, 165, 174, 205, 289, 303
Hin1I GRCGYC 4 cut(s) 24, 129, 158, 236
Hin1II CATG 2 cut(s) 409, 817
Hin6I GCGC 7 cut(s) 24, 74, 163, 172, 203, 287, 301
HinP1I GCGC 7 cut(s) 24, 74, 163, 172, 203, 287, 301
HinfI GANTC 6 cut(s) 101, 451, 519, 752, 836, 919
HpaII CCGG 8 cut(s) 120, 206, 324, 353, 671, 1009, 1048, 1060
HphI GGTGA 2 cut(s) 668, 857
Hpy166II GTNNAC 2 cut(s) 88, 348
Hpy188I TCNGA 8 cut(s) 333, 501, 530, 577, 582, 918, 965, 1101
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 2 cut(s) 88, 348
Hpy99I CGWCG 7 cut(s) 131, 163, 233, 241, 260, 294, 1088
HpyAV CCTTC 4 cut(s) 383, 680, 1018, 1158
HpyCH4III ACNGT 4 cut(s) 85, 482, 506, 799
HpyCH4IV ACGT 3 cut(s) 49, 62, 1086
HpyCH4V TGCA 8 cut(s) 81, 98, 222, 246, 706, 712, 1034, 1067
HpyF3I CTNAG 3 cut(s) 380, 932, 962
HpySE526I ACGT 3 cut(s) 49, 62, 1086
Hsp92I GRCGYC 4 cut(s) 24, 129, 158, 236
Hsp92II CATG 2 cut(s) 409, 817
HspAI GCGC 7 cut(s) 24, 74, 163, 172, 203, 287, 301
KasI GGCGCC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 577
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 4 cut(s) 577, 642, 1050, 1096
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 6 cut(s) 110, 418, 429, 432, 724, 751
LweI GCATC 2 cut(s) 693, 699
MaeI CTAG 1 cut(s) 1041
MaeII ACGT 3 cut(s) 49, 62, 1086
MaeIII GTNAC 4 cut(s) 482, 506, 694, 863
MalI GATC 4 cut(s) 579, 644, 1052, 1098
MbiI CCGCTC 1 cut(s) 69
MboI GATC 4 cut(s) 577, 642, 1050, 1096
MboII GAAGA 8 cut(s) 23, 425, 428, 434, 472, 514, 517, 994
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 2 cut(s) 724, 912
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 3 cut(s) 95, 761, 830
MmeI TCCRAC 2 cut(s) 802, 947
MroNI GCCGGC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 1 cut(s) 900
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 29, 42
MspI CCGG 8 cut(s) 120, 206, 324, 353, 671, 1009, 1048, 1060
MspR9I CCNGG 4 cut(s) 386, 439, 955, 1048
MvaI CCWGG 3 cut(s) 386, 439, 955
NaeI GCCGGC 1 cut(s) 207
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 1 cut(s) 1048
NcoI CCATGG 2 cut(s) 405, 813
NdeII GATC 4 cut(s) 577, 642, 1050, 1096
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 2 cut(s) 409, 817
NlaIV GGNNCC 5 cut(s) 25, 346, 377, 784, 959
NmuCI GTSAC 2 cut(s) 694, 863
NotI GCGGCCGC 1 cut(s) 30
PceI AGGCCT 2 cut(s) 191, 1028
PdiI GCCGGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 3 cut(s) 451, 519, 919
PinAI ACCGGT 1 cut(s) 670
PleI GAGTC 3 cut(s) 95, 760, 830
PluTI GGCGCC 1 cut(s) 27
PmaCI CACGTG 2 cut(s) 50, 63
PmlI CACGTG 2 cut(s) 50, 63
PpsI GAGTC 3 cut(s) 95, 760, 830
Ppu21I YACGTR 2 cut(s) 50, 63
PpuMI RGGWCCY 1 cut(s) 958
Psp5II RGGWCCY 1 cut(s) 958
Psp6I CCWGG 3 cut(s) 384, 437, 953
PspCI CACGTG 2 cut(s) 50, 63
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 3 cut(s) 384, 437, 953
PspN4I GGNNCC 5 cut(s) 25, 346, 377, 784, 959
PspPI GGNCC 5 cut(s) 345, 553, 905, 958, 1057
PspPPI RGGWCCY 1 cut(s) 958
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 6 cut(s) 110, 548, 566, 598, 669, 831
RsaNI GTAC 6 cut(s) 109, 547, 565, 597, 668, 830
RseI CAYNNNNRTG 1 cut(s) 624
SacII CCGCGG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 900
Sau3AI GATC 4 cut(s) 577, 642, 1050, 1096
Sau96I GGNCC 5 cut(s) 345, 553, 905, 958, 1057
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 3 cut(s) 95, 761, 830
ScrFI CCNGG 4 cut(s) 386, 439, 955, 1048
SduI GDGCHC 1 cut(s) 49
SfaNI GCATC 2 cut(s) 693, 699
SfoI GGCGCC 1 cut(s) 25
Sfr303I CCGCGG 1 cut(s) 30
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 4 cut(s) 345, 553, 905, 958
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 1018
SmoI CTYRAG 1 cut(s) 1018
Sse9I AATT 2 cut(s) 724, 912
SseBI AGGCCT 2 cut(s) 191, 1028
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 1041
StuI AGGCCT 2 cut(s) 191, 1028
StyD4I CCNGG 4 cut(s) 384, 437, 953, 1046
StyI CCWWGG 2 cut(s) 405, 813
TaaI ACNGT 4 cut(s) 85, 482, 506, 799
TaiI ACGT 3 cut(s) 52, 65, 1089
TaqI TCGA 1 cut(s) 1083
TasI AATT 2 cut(s) 724, 912
TatI WGTACW 2 cut(s) 546, 564
TauI GCSGC 8 cut(s) 29, 32, 35, 69, 146, 212, 236, 637
TfiI GAWTC 3 cut(s) 451, 519, 919
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 2 cut(s) 598, 802
TseFI GTSAC 2 cut(s) 694, 863
TseI GCWGC 6 cut(s) 123, 431, 442, 445, 712, 764
Tsp45I GTSAC 2 cut(s) 694, 863
TspDTI ATGAA 4 cut(s) 426, 719, 798, 1140
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 2 cut(s) 598, 802
VpaK11BI GGWCC 4 cut(s) 345, 553, 905, 958
XagI CCTNNNNNAGG 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 2 cut(s) 623, 1117
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 1 cut(s) 1041
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.