MD09G1079200.v1.1

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
5559447 .. 5561882
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1079200.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGTTGAAGGAAGATCAGAGCAATGGGACTGCTGCCAACAACAACTGCGCACGTGTTTGCGACACGTGCCGGGCAGCAGCTTGCACGGTGTTCTGTCGTGCAGACTCGGCGTACCTGTGCTCGGGCTGCGACGCCACCATTCATGCGGTCAATTGTGTGGCGTCGCACCATGAGCGTGTGAGGGTATGCGAGGCGTGCGAGCGTGCCCCAGCCGCTTTTCTGTGCAAAGCGGATTCGGCCTCGCTCTGCACGGCCTGCGACGCGGACATCCACTCTGCCAATCCTCTGGCGAGGCGCCACCAGCGCGTGCCCATCCTGCCTATTTCTGGTTGCCTGTACGGCCCTCAGGCAATTGAACATGGCAGGATGAAGTTGGGGAGGTCCGCCACGGCGGAGATGGAGGATGGGTTTATGAACCAGGAAGGAGATGAAACCATTGATGAGGAAGATGAGGATGAGGCAGCATCATGGTTGTTGCTCAACCCAGTGAAAAACAATAACAACAACAACACAAAGAACAATGGGCTTTTCTTTGGAGTGGACGTTGATGAGTATTTGGATCTTGTGGAGTACAACTCATGTGCTGATCAGAATAATCAGTTCACTGATCATCATCAGCAAGAACAGCAGCAGGAACAACATTATGGGGTCGCACACAAGAATTATGGAGGAGATAGTGTTGTGCCAGTTCATCAGTATGGAGAAGTAGCGAAAGCCCACCAGATGCAGCAGCTGCAGAAGCAAAGTTTTCATCAGTTGGGTTTGGAGTATGAGTCCTCAAAAGCTGCATACAGTTACAATGGCTCTCTAAGTCACAGTGTTTCTGTTTCATCCATGGATGTTGGAGTTGTACCGAATTCAACAATGAGCGATATCTCAATTTCACACCCGAGAACTCCCACAGGAACTGTTGACCTTTTCAGTGGATCTTCCATTCAAATGCCAACCCAACTAAGTCCAATGGACAGGGAGGCCAGGGTTCTCAGGTACAGAGAGAAGAAAAAGACGAGGAAGTTTGAGAAAACAATCCGGTATGCCTCAAGGAAGGCCTACGCCGAGACCAGACCCCGAATCAAGGGCCGATTTGCAAAGCGAACTGAAATGGAAGTTGAAGTCGACCAAATGTTCTCCACAACGCTGATGGCGGAAAATGGATATGGCATTGTTCCATCATTCTAG

Protein Analysis

393

Amino Acids

43.55

Weight (kDa)

5.76

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 59 - 105 1.2e-07 B-box zinc finger
CCT PF06203 323 - 365 8.3e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013044)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 1116
AccII CGCG 2 cut(s) 263, 306
AciI CCGC 7 cut(s) 146, 213, 230, 263, 384, 392, 1145
AclWI GGATC 2 cut(s) 567, 934
AcsI RAATTY 1 cut(s) 856
AcvI CACGTG 2 cut(s) 53, 66
AcyI GRCGYC 3 cut(s) 132, 161, 295
AfaI GTAC 5 cut(s) 113, 338, 572, 852, 989
AfiI CCNNNNNNNGG 3 cut(s) 121, 326, 1075
AflIII ACRYGT 2 cut(s) 52, 63
AgsI TTSAA 5 cut(s) 7, 356, 861, 938, 1112
AjnI CCWGG 2 cut(s) 417, 974
AluBI AGCT 3 cut(s) 80, 733, 785
AluI AGCT 3 cut(s) 80, 733, 785
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 1052
AlwI GGATC 2 cut(s) 567, 934
AlwNI CAGNNNCTG 2 cut(s) 733, 908
Ama87I CYCGRG 2 cut(s) 121, 889
AoxI GGCC 6 cut(s) 237, 252, 340, 972, 1047, 1078
ApoI RAATTY 1 cut(s) 856
AspLEI GCGC 3 cut(s) 50, 297, 306
AspS9I GGNCC 3 cut(s) 341, 381, 1078
AsuC2I CCSGG 1 cut(s) 71
AvaI CYCGRG 2 cut(s) 121, 889
AvaII GGWCC 1 cut(s) 381
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 2 cut(s) 208, 312
BanI GGYRCC 1 cut(s) 294
BbrPI CACGTG 2 cut(s) 53, 66
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 5 cut(s) 320, 391, 398, 1135, 1177
BceAI ACGGC 3 cut(s) 267, 355, 405
BciT130I CCWGG 2 cut(s) 419, 976
BclI TGATCA 2 cut(s) 586, 607
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 1052
BfaI CTAG 1 cut(s) 1177
BfmI CTRYAG 1 cut(s) 734
BfoI RGCGCY 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 339
Bme1390I CCNGG 3 cut(s) 71, 419, 976
Bme18I GGWCC 1 cut(s) 381
BmeT110I CYCGRG 2 cut(s) 121, 889
BmgT120I GGNCC 3 cut(s) 341, 381, 1078
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 3 cut(s) 71, 419, 976
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 2 cut(s) 473, 714
BmuI ACTGGG 1 cut(s) 479
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpuEI CTTGAG 1 cut(s) 1024
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 2 cut(s) 53, 66
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 3 cut(s) 132, 161, 295
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 3 cut(s) 387, 834, 975
BsaWI WCCGGW 1 cut(s) 1029
BsaXI ACNNNNNCTCC 8 cut(s) 392, 422, 528, 558, 663, 693, 758, 788
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 326, 1075
Bse1I ACTGG 2 cut(s) 485, 686
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 2 cut(s) 419, 976
BseDI CCNNGG 3 cut(s) 387, 834, 975
BseGI GGATG 7 cut(s) 267, 312, 372, 409, 460, 830, 844
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 3 cut(s) 121, 326, 1075
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 359, 997
BseNI ACTGG 2 cut(s) 485, 686
BseRI GAGGAG 1 cut(s) 684
BseSI GKGCMC 2 cut(s) 208, 312
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 2 cut(s) 120, 232
Bsh1236I CGCG 2 cut(s) 263, 306
BshFI GGCC 6 cut(s) 239, 254, 342, 974, 1049, 1080
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 2 cut(s) 121, 889
BsiSI CCGG 2 cut(s) 70, 1030
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 3 cut(s) 121, 326, 1075
BsmAI GTCTC 1 cut(s) 1052
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 6 cut(s) 239, 254, 342, 974, 1049, 1080
Bso31I GGTCTC 1 cut(s) 1052
BsoBI CYCGRG 2 cut(s) 121, 889
Bsp1286I GDGCHC 3 cut(s) 122, 208, 312
Bsp143I GATC 5 cut(s) 13, 559, 586, 607, 926
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 7 cut(s) 146, 213, 230, 263, 384, 392, 1145
BspANI GGCC 6 cut(s) 239, 254, 342, 974, 1049, 1080
BspCNI CTCAG 2 cut(s) 358, 996
BspFNI CGCG 2 cut(s) 263, 306
BspLI GGNNCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 738
BspPI GGATC 2 cut(s) 567, 934
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 1052
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 2 cut(s) 485, 686
BssECI CCNNGG 3 cut(s) 387, 834, 975
BssMI GATC 5 cut(s) 13, 559, 586, 607, 926
BssNI GRCGYC 3 cut(s) 132, 161, 295
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 419, 976
Bst4CI ACNGT 4 cut(s) 88, 794, 818, 910
BstACI GRCGYC 3 cut(s) 132, 161, 295
BstAPI GCANNNNNTGC 2 cut(s) 255, 733
BstBAI YACGTR 2 cut(s) 53, 66
BstC8I GCNNGC 6 cut(s) 82, 196, 200, 204, 256, 308
BstDEI CTNAG 4 cut(s) 345, 809, 953, 983
BstDSI CCRYGG 2 cut(s) 387, 834
BstF5I GGATG 7 cut(s) 267, 312, 372, 409, 460, 830, 844
BstFNI CGCG 2 cut(s) 263, 306
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 3 cut(s) 50, 297, 306
BstKTI GATC 5 cut(s) 16, 562, 589, 610, 929
BstMAI GTCTC 1 cut(s) 1052
BstMBI GATC 5 cut(s) 13, 559, 586, 607, 926
BstNI CCWGG 2 cut(s) 419, 976
BstSCI CCNGG 3 cut(s) 69, 417, 974
BstSFI CTRYAG 1 cut(s) 734
BstSLI GKGCMC 2 cut(s) 208, 312
BstUI CGCG 2 cut(s) 263, 306
BstX2I RGATCY 2 cut(s) 559, 926
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 2 cut(s) 559, 926
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 6 cut(s) 239, 254, 342, 974, 1049, 1080
BtgI CCRYGG 2 cut(s) 387, 834
BtsCI GGATG 7 cut(s) 267, 312, 372, 409, 460, 830, 844
BtsIMutI CAGTG 4 cut(s) 492, 603, 823, 928
Cac8I GCNNGC 6 cut(s) 82, 196, 200, 204, 256, 308
CaiI CAGNNNCTG 2 cut(s) 733, 908
CfoI GCGC 3 cut(s) 50, 297, 306
Cfr13I GGNCC 3 cut(s) 341, 381, 1078
CseI GACGC 3 cut(s) 140, 150, 269
Csp6I GTAC 5 cut(s) 112, 337, 571, 851, 988
CviAII CATG 6 cut(s) 143, 170, 359, 468, 579, 835
CviQI GTAC 5 cut(s) 112, 337, 571, 851, 988
DdeI CTNAG 4 cut(s) 345, 809, 953, 983
DinI GGCGCC 1 cut(s) 296
DpnI GATC 5 cut(s) 15, 561, 588, 609, 928
DpnII GATC 5 cut(s) 13, 559, 586, 607, 926
EciI GGCGGA 3 cut(s) 373, 407, 1160
Eco130I CCWWGG 1 cut(s) 834
Eco147I AGGCCT 1 cut(s) 1049
Eco31I GGTCTC 1 cut(s) 1052
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 1 cut(s) 381
Eco72I CACGTG 2 cut(s) 53, 66
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 2 cut(s) 121, 889
EcoRI GAATTC 1 cut(s) 856
EcoRII CCWGG 2 cut(s) 417, 974
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 296
EheI GGCGCC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 6 cut(s) 146, 173, 362, 471, 582, 838
FaqI GGGAC 1 cut(s) 40
FatI CATG 6 cut(s) 142, 169, 358, 467, 578, 834
FbaI TGATCA 2 cut(s) 586, 607
FblI GTMKAC 1 cut(s) 1116
FokI GGATG 7 cut(s) 254, 299, 379, 416, 467, 817, 851
FspBI CTAG 1 cut(s) 1177
FspI TGCGCA 1 cut(s) 49
GlaI GCGC 3 cut(s) 49, 296, 305
GsaI CCCAGC 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 6 cut(s) 239, 254, 342, 974, 1049, 1080
HapII CCGG 2 cut(s) 70, 1030
HgaI GACGC 3 cut(s) 140, 150, 269
HhaI GCGC 3 cut(s) 50, 297, 306
Hin1I GRCGYC 3 cut(s) 132, 161, 295
Hin1II CATG 6 cut(s) 146, 173, 362, 471, 582, 838
Hin6I GCGC 3 cut(s) 48, 295, 304
HinP1I GCGC 3 cut(s) 48, 295, 304
HincII GTYRAC 2 cut(s) 913, 1117
HindII GTYRAC 2 cut(s) 913, 1117
HinfI GANTC 4 cut(s) 104, 233, 773, 1071
HpaII CCGG 2 cut(s) 70, 1030
Hpy166II GTNNAC 4 cut(s) 541, 603, 913, 1117
Hpy188I TCNGA 2 cut(s) 18, 591
Hpy8I GTNNAC 4 cut(s) 541, 603, 913, 1117
Hpy99I CGWCG 3 cut(s) 134, 166, 263
HpyAV CCTTC 2 cut(s) 416, 1039
HpyCH4III ACNGT 4 cut(s) 88, 794, 818, 910
HpyCH4IV ACGT 3 cut(s) 52, 65, 543
HpyCH4V TGCA 8 cut(s) 84, 101, 225, 249, 727, 736, 788, 1088
HpyF3I CTNAG 4 cut(s) 345, 809, 953, 983
HpySE526I ACGT 3 cut(s) 52, 65, 543
Hsp92I GRCGYC 3 cut(s) 132, 161, 295
Hsp92II CATG 6 cut(s) 146, 173, 362, 471, 582, 838
HspAI GCGC 3 cut(s) 48, 295, 304
KasI GGCGCC 1 cut(s) 294
Ksp22I TGATCA 2 cut(s) 586, 607
Kzo9I GATC 5 cut(s) 13, 559, 586, 607, 926
LweI GCATC 2 cut(s) 473, 714
MaeI CTAG 1 cut(s) 1177
MaeII ACGT 3 cut(s) 52, 65, 543
MaeIII GTNAC 2 cut(s) 794, 812
MalI GATC 5 cut(s) 15, 561, 588, 609, 928
MboI GATC 5 cut(s) 13, 559, 586, 607, 926
MboII GAAGA 4 cut(s) 23, 458, 921, 1009
MfeI CAATTG 2 cut(s) 151, 351
MflI RGATCY 2 cut(s) 559, 926
MhlI GDGCHC 3 cut(s) 122, 208, 312
MluCI AATT 5 cut(s) 151, 351, 661, 856, 879
Mly113I GGCGCC 1 cut(s) 295
MlyI GAGTC 2 cut(s) 98, 782
MmeI TCCRAC 1 cut(s) 823
MslI CAYNNNNRTG 3 cut(s) 174, 696, 938
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 2 cut(s) 70, 1030
MspR9I CCNGG 3 cut(s) 71, 419, 976
MunI CAATTG 2 cut(s) 151, 351
MvaI CCWGG 2 cut(s) 419, 976
MvnI CGCG 2 cut(s) 263, 306
NarI GGCGCC 1 cut(s) 295
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 834
NdeII GATC 5 cut(s) 13, 559, 586, 607, 926
NlaIII CATG 6 cut(s) 146, 173, 362, 471, 582, 838
NlaIV GGNNCC 1 cut(s) 296
NmeAIII GCCGAG 2 cut(s) 86, 1081
NmuCI GTSAC 1 cut(s) 812
NsbI TGCGCA 1 cut(s) 49
PceI AGGCCT 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 233, 1071
PleI GAGTC 2 cut(s) 98, 781
PluTI GGCGCC 1 cut(s) 298
PmaCI CACGTG 2 cut(s) 53, 66
PmlI CACGTG 2 cut(s) 53, 66
PpsI GAGTC 2 cut(s) 98, 781
Ppu21I YACGTR 2 cut(s) 53, 66
Psp6I CCWGG 2 cut(s) 417, 974
PspCI CACGTG 2 cut(s) 53, 66
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 417, 974
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 3 cut(s) 341, 381, 1078
PstI CTGCAG 1 cut(s) 738
PstNI CAGNNNCTG 2 cut(s) 733, 908
PsuI RGATCY 2 cut(s) 559, 926
PvuII CAGCTG 1 cut(s) 733
RsaI GTAC 5 cut(s) 113, 338, 572, 852, 989
RsaNI GTAC 5 cut(s) 112, 337, 571, 851, 988
RseI CAYNNNNRTG 3 cut(s) 174, 696, 938
SalI GTCGAC 1 cut(s) 1115
Sau3AI GATC 5 cut(s) 13, 559, 586, 607, 926
Sau96I GGNCC 3 cut(s) 341, 381, 1078
SchI GAGTC 2 cut(s) 98, 782
ScrFI CCNGG 3 cut(s) 71, 419, 976
SduI GDGCHC 3 cut(s) 122, 208, 312
SfaNI GCATC 2 cut(s) 473, 714
SfcI CTRYAG 1 cut(s) 734
SfoI GGCGCC 1 cut(s) 296
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 3 cut(s) 174, 696, 938
SmlI CTYRAG 1 cut(s) 1039
SmoI CTYRAG 1 cut(s) 1039
Sse9I AATT 5 cut(s) 151, 351, 661, 856, 879
SseBI AGGCCT 1 cut(s) 1049
SsiI CCGC 7 cut(s) 146, 213, 230, 263, 384, 392, 1145
SspDI GGCGCC 1 cut(s) 294
SspMI CTAG 1 cut(s) 1177
StuI AGGCCT 1 cut(s) 1049
StyD4I CCNGG 3 cut(s) 69, 417, 974
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 4 cut(s) 88, 794, 818, 910
TaiI ACGT 3 cut(s) 55, 68, 546
TaqI TCGA 1 cut(s) 1116
TasI AATT 5 cut(s) 151, 351, 661, 856, 879
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 233, 1071
TscAI CASTG 4 cut(s) 492, 610, 823, 928
TseFI GTSAC 1 cut(s) 812
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 7 cut(s) 131, 383, 428, 444, 680, 740, 819
TspRI CASTG 4 cut(s) 492, 610, 823, 928
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 2 cut(s) 394, 1138
XmiI GTMKAC 1 cut(s) 1116
XspI CTAG 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.