MD17G1069600.v1.1

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
5632424 .. 5634831
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1069600.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGTTGAAGGAAGATCAGAGCAATGGCACTGCTACCGCCAACAACTGGGCTCGTGTTTGTGATACGTGCCGGGCAGCAGCATGCACGGTGTACTGTCGTGCAGACTCCGCGTACCTCTGCTCGGGCTGCGATGCCACCATTCATGCTGCCAATCGCGTGGCGTCGCGCCATGAGCGCGTGTGGGTCTGTGAGGCCTGCGAGCGTGCTCCGGCCGCTTTCCTGTGCAAAGCGGATGCAGCCTCGCTCTGCACTGCCTGCGACGCGGACATCCATTCCGCCAATCCTCTAGCGAGGCGTCACCAGCGCGTCCCCATCCTGCCCATCTCCGGTTGCTTGTACAGCTCTCAGGCAACCGAACAAGGCGAGATGGGAGTGGCTGTGTCTGCTGGGGCGGAGACAGAAGATGGGTTCCTGAGCCAGGAAGGAGATGATACCATTTATGAGGAAGATGAGGATGAGGCAGCATCTTGGTTGTTGCTCAACCCGGTGAAAAACAACAACAACAATAACAACACAAACACTCAGAATAATGGGTTTTTCTTTGGAGCGGAAGTTGATGAGTATTTGGATCTTGTGGAGTACAACACATGTGCTGATCAGAATAATCAGTTCACTGATCATCATCAGCAGCATGACCAGCAGCAGCAACAACAATATGGGGTCCCATACAAGAACTATGGAGGAGATAGTGTTGTGCCAATTCATCAGCATGGAGAAGTAGGGAAAGCTCACCAGCTGCAGAAGCAAAGTTTTCATCAGTTGGGTTTGGAGTATGAGTCCTCAAAAGCTGCATACAGTTACAATGGTTCGCTAAGTCACAGTGTTTCTGTTTCATCCATGGATGTTGGAGTTGTACCGGATTCAACAATGAGCGATATCTCAATTTCGCACCCGAGAACTCCCAAAGGAACTATTGACCTTTTCAGTGGACCTACCATTCAAATGCCAACCCAACTAAGTCCAATGGACAGGGAGGCCAGGGTCCTAAGGTACAGAGAGAAGAAAAAGACGAGGAAGTTTGAGAAAACAATCCGGTATGCCTCAAGGAAGGCCTACGCCGAGACCAGACCCCGAATCAAGGGCCGGTTTGCAAAGCGAACTGAAATGGAAGTTGAAGTCGACCAGATGTTCGCCACATCGCTGATGGCGGAAAATGGATATGGCATTGTTCCATCATTCTAA

Protein Analysis

394

Amino Acids

43.6

Weight (kDa)

5.48

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 59 - 105 1.6e-07 B-box zinc finger
CCT PF06203 324 - 366 8.3e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013044)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 45
AccBSI CCGCTC 1 cut(s) 548
AccI GTMKAC 1 cut(s) 1119
AccII CGCG 6 cut(s) 110, 156, 166, 177, 263, 306
AciI CCGC 9 cut(s) 36, 108, 213, 230, 263, 276, 392, 548, 1148
AclWI GGATC 1 cut(s) 576
AcoI YGGCCR 1 cut(s) 210
AcyI GRCGYC 2 cut(s) 161, 295
AfaI GTAC 6 cut(s) 92, 113, 338, 581, 855, 992
AfiI CCNNNNNNNGG 5 cut(s) 45, 121, 326, 418, 1078
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 4 cut(s) 7, 864, 941, 1115
AjnI CCWGG 2 cut(s) 417, 977
AluBI AGCT 4 cut(s) 342, 728, 736, 788
AluI AGCT 4 cut(s) 342, 728, 736, 788
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 2 cut(s) 389, 1055
AlwI GGATC 1 cut(s) 576
Ama87I CYCGRG 2 cut(s) 121, 892
AoxI GGCC 5 cut(s) 192, 210, 975, 1050, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 1112, 1144
AspLEI GCGC 3 cut(s) 168, 177, 306
AspS9I GGNCC 4 cut(s) 661, 929, 982, 1081
AsuC2I CCSGG 2 cut(s) 71, 485
AsuHPI GGTGA 3 cut(s) 290, 499, 722
AvaI CYCGRG 2 cut(s) 121, 892
AvaII GGWCC 3 cut(s) 661, 929, 982
AxyI CCTNAGG 1 cut(s) 986
BanII GRGCYC 1 cut(s) 52
BauI CACGAG 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 6 cut(s) 320, 329, 361, 398, 1138, 1180
BciT130I CCWGG 2 cut(s) 419, 979
BclI TGATCA 2 cut(s) 595, 616
BcnI CCSGG 2 cut(s) 71, 485
BcoDI GTCTC 2 cut(s) 389, 1055
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 737
Bme1390I CCNGG 4 cut(s) 71, 419, 485, 979
Bme18I GGWCC 3 cut(s) 661, 929, 982
BmeT110I CYCGRG 2 cut(s) 121, 892
BmgT120I GGNCC 4 cut(s) 661, 929, 982, 1081
BmiI GGNNCC 4 cut(s) 410, 662, 663, 983
BmrFI CCNGG 4 cut(s) 71, 419, 485, 979
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 3 cut(s) 121, 223, 473
BmuI ACTGGG 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 1027
BpuMI CCSGG 2 cut(s) 71, 485
BsaAI YACGTR 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 621
BsaHI GRCGYC 2 cut(s) 161, 295
BsaI GGTCTC 1 cut(s) 1055
BsaJI CCNNGG 2 cut(s) 837, 978
BsaWI WCCGGW 3 cut(s) 326, 856, 1032
BsaXI ACNNNNNCTCC 8 cut(s) 363, 393, 537, 567, 675, 705, 761, 791
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 121, 326, 418, 1078
Bse118I RCCGGY 1 cut(s) 1083
Bse1I ACTGG 1 cut(s) 50
Bse21I CCTNAGG 1 cut(s) 986
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 2 cut(s) 419, 979
BseDI CCNNGG 2 cut(s) 837, 978
BseGI GGATG 6 cut(s) 238, 267, 312, 460, 833, 847
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 5 cut(s) 45, 121, 326, 418, 1078
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 359, 404, 536
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 696
BseX3I CGGCCG 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 2 cut(s) 120, 232
Bsh1236I CGCG 6 cut(s) 110, 156, 166, 177, 263, 306
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 5 cut(s) 194, 212, 977, 1052, 1083
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 2 cut(s) 121, 892
BsiSI CCGG 7 cut(s) 70, 209, 327, 485, 857, 1033, 1084
BslFI GGGAC 2 cut(s) 293, 647
BslI CCNNNNNNNGG 5 cut(s) 45, 121, 326, 418, 1078
BsmAI GTCTC 2 cut(s) 389, 1055
BsmFI GGGAC 2 cut(s) 293, 647
BsnI GGCC 5 cut(s) 194, 212, 977, 1052, 1083
Bso31I GGTCTC 1 cut(s) 1055
BsoBI CYCGRG 2 cut(s) 121, 892
Bsp1286I GDGCHC 2 cut(s) 52, 208
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 4 cut(s) 13, 568, 595, 616
Bsp19I CCATGG 1 cut(s) 837
BspACI CCGC 9 cut(s) 36, 108, 213, 230, 263, 276, 392, 548, 1148
BspANI GGCC 5 cut(s) 194, 212, 977, 1052, 1083
BspCNI CTCAG 3 cut(s) 358, 405, 535
BspFNI CGCG 6 cut(s) 110, 156, 166, 177, 263, 306
BspLI GGNNCC 4 cut(s) 410, 662, 663, 983
BspMAI CTGCAG 1 cut(s) 741
BspPI GGATC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 1055
BsrBI CCGCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 1083
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 1083
BssECI CCNNGG 2 cut(s) 837, 978
BssMI GATC 4 cut(s) 13, 568, 595, 616
BssNI GRCGYC 2 cut(s) 161, 295
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 837
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 419, 979
Bst4CI ACNGT 4 cut(s) 88, 95, 797, 821
BstACI GRCGYC 2 cut(s) 161, 295
BstAPI GCANNNNNTGC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 5 cut(s) 82, 196, 200, 204, 256
BstDEI CTNAG 6 cut(s) 345, 413, 522, 812, 956, 986
BstDSI CCRYGG 1 cut(s) 837
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 6 cut(s) 238, 267, 312, 460, 833, 847
BstFNI CGCG 6 cut(s) 110, 156, 166, 177, 263, 306
BstHHI GCGC 3 cut(s) 168, 177, 306
BstKTI GATC 4 cut(s) 16, 571, 598, 619
BstMAI GTCTC 2 cut(s) 389, 1055
BstMBI GATC 4 cut(s) 13, 568, 595, 616
BstMCI CGRYCG 1 cut(s) 213
BstNI CCWGG 2 cut(s) 419, 979
BstNSI RCATGY 2 cut(s) 84, 591
BstSCI CCNGG 4 cut(s) 69, 417, 483, 977
BstSFI CTRYAG 1 cut(s) 737
BstUI CGCG 6 cut(s) 110, 156, 166, 177, 263, 306
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 1 cut(s) 568
BstZI CGGCCG 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 986
BsuRI GGCC 5 cut(s) 194, 212, 977, 1052, 1083
BtgI CCRYGG 1 cut(s) 837
BtgZI GCGATG 2 cut(s) 144, 1122
BtsCI GGATG 6 cut(s) 238, 267, 312, 460, 833, 847
BtsI GCAGTG 2 cut(s) 27, 249
BtsIMutI CAGTG 5 cut(s) 27, 249, 612, 826, 931
Cac8I GCNNGC 5 cut(s) 82, 196, 200, 204, 256
CfoI GCGC 3 cut(s) 168, 177, 306
Cfr10I RCCGGY 1 cut(s) 1083
Cfr13I GGNCC 4 cut(s) 661, 929, 982, 1081
CseI GACGC 4 cut(s) 150, 269, 284, 295
Csp6I GTAC 6 cut(s) 91, 112, 337, 580, 854, 991
CviAII CATG 7 cut(s) 81, 143, 170, 588, 632, 710, 838
CviQI GTAC 6 cut(s) 91, 112, 337, 580, 854, 991
DdeI CTNAG 6 cut(s) 345, 413, 522, 812, 956, 986
DpnI GATC 4 cut(s) 15, 570, 597, 618
DpnII GATC 4 cut(s) 13, 568, 595, 616
EaeI YGGCCR 1 cut(s) 210
EagI CGGCCG 1 cut(s) 210
EciI GGCGGA 3 cut(s) 265, 407, 1163
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 2 cut(s) 194, 1052
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 1055
Eco32I GATATC 1 cut(s) 877
Eco47I GGWCC 3 cut(s) 661, 929, 982
Eco52I CGGCCG 1 cut(s) 210
Eco81I CCTNAGG 1 cut(s) 986
Eco88I CYCGRG 2 cut(s) 121, 892
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 661, 982
EcoRII CCWGG 2 cut(s) 417, 977
EcoRV GATATC 1 cut(s) 877
EcoT14I CCWWGG 1 cut(s) 837
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 7 cut(s) 84, 146, 173, 591, 635, 713, 841
FaqI GGGAC 2 cut(s) 293, 647
FatI CATG 7 cut(s) 80, 142, 169, 587, 631, 709, 837
FbaI TGATCA 2 cut(s) 595, 616
FblI GTMKAC 1 cut(s) 1119
FokI GGATG 6 cut(s) 245, 254, 299, 467, 820, 854
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 1 cut(s) 287
GlaI GCGC 3 cut(s) 167, 176, 305
GsaI CCCAGC 1 cut(s) 390
HaeIII GGCC 5 cut(s) 194, 212, 977, 1052, 1083
HapII CCGG 7 cut(s) 70, 209, 327, 485, 857, 1033, 1084
HgaI GACGC 4 cut(s) 150, 269, 284, 295
HhaI GCGC 3 cut(s) 168, 177, 306
Hin1I GRCGYC 2 cut(s) 161, 295
Hin1II CATG 7 cut(s) 84, 146, 173, 591, 635, 713, 841
Hin6I GCGC 3 cut(s) 166, 175, 304
HinP1I GCGC 3 cut(s) 166, 175, 304
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HinfI GANTC 4 cut(s) 104, 776, 860, 1074
HpaII CCGG 7 cut(s) 70, 209, 327, 485, 857, 1033, 1084
HphI GGTGA 3 cut(s) 290, 499, 722
Hpy166II GTNNAC 4 cut(s) 91, 612, 929, 1120
Hpy188I TCNGA 3 cut(s) 18, 525, 600
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 4 cut(s) 91, 612, 929, 1120
Hpy99I CGWCG 2 cut(s) 166, 263
HpyAV CCTTC 2 cut(s) 416, 1042
HpyCH4III ACNGT 4 cut(s) 88, 95, 797, 821
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 8 cut(s) 84, 101, 225, 236, 249, 739, 791, 1091
HpyF3I CTNAG 6 cut(s) 345, 413, 522, 812, 956, 986
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 2 cut(s) 161, 295
Hsp92II CATG 7 cut(s) 84, 146, 173, 591, 635, 713, 841
HspAI GCGC 3 cut(s) 166, 175, 304
KflI GGGWCCC 1 cut(s) 661
Ksp22I TGATCA 2 cut(s) 595, 616
Kzo9I GATC 4 cut(s) 13, 568, 595, 616
LmnI GCTCC 2 cut(s) 211, 545
LweI GCATC 3 cut(s) 121, 223, 473
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 296, 797, 815
MalI GATC 4 cut(s) 15, 570, 597, 618
MbiI CCGCTC 1 cut(s) 548
MboI GATC 4 cut(s) 13, 568, 595, 616
MboII GAAGA 4 cut(s) 23, 413, 458, 1012
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 2 cut(s) 52, 208
MluCI AATT 2 cut(s) 699, 882
MlyI GAGTC 2 cut(s) 98, 785
MmeI TCCRAC 1 cut(s) 826
MslI CAYNNNNRTG 2 cut(s) 708, 941
MspA1I CMGCKG 1 cut(s) 736
MspI CCGG 7 cut(s) 70, 209, 327, 485, 857, 1033, 1084
MspR9I CCNGG 4 cut(s) 71, 419, 485, 979
MvaI CCWGG 2 cut(s) 419, 979
MvnI CGCG 6 cut(s) 110, 156, 166, 177, 263, 306
NciI CCSGG 2 cut(s) 71, 485
NcoI CCATGG 1 cut(s) 837
NdeII GATC 4 cut(s) 13, 568, 595, 616
NlaIII CATG 7 cut(s) 84, 146, 173, 591, 635, 713, 841
NlaIV GGNNCC 4 cut(s) 410, 662, 663, 983
NmeAIII GCCGAG 1 cut(s) 1084
NmuCI GTSAC 2 cut(s) 296, 815
NspI RCATGY 2 cut(s) 84, 591
PaeI GCATGC 1 cut(s) 84
PceI AGGCCT 2 cut(s) 194, 1052
PciI ACATGT 1 cut(s) 587
PfeI GAWTC 2 cut(s) 860, 1074
PflMI CCANNNNNTGG 1 cut(s) 45
PleI GAGTC 2 cut(s) 98, 784
PpsI GAGTC 2 cut(s) 98, 784
Ppu21I YACGTR 1 cut(s) 66
PpuMI RGGWCCY 2 cut(s) 661, 982
PscI ACATGT 1 cut(s) 587
Psp5II RGGWCCY 2 cut(s) 661, 982
Psp6I CCWGG 2 cut(s) 417, 977
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 2 cut(s) 417, 977
PspN4I GGNNCC 4 cut(s) 410, 662, 663, 983
PspPI GGNCC 4 cut(s) 661, 929, 982, 1081
PspPPI RGGWCCY 2 cut(s) 661, 982
PstI CTGCAG 1 cut(s) 741
PsuI RGATCY 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 6 cut(s) 92, 113, 338, 581, 855, 992
RsaNI GTAC 6 cut(s) 91, 112, 337, 580, 854, 991
RseI CAYNNNNRTG 2 cut(s) 708, 941
SalI GTCGAC 1 cut(s) 1118
Sau3AI GATC 4 cut(s) 13, 568, 595, 616
Sau96I GGNCC 4 cut(s) 661, 929, 982, 1081
SchI GAGTC 2 cut(s) 98, 785
ScrFI CCNGG 4 cut(s) 71, 419, 485, 979
SduI GDGCHC 2 cut(s) 52, 208
SetI ASST 9 cut(s) 68, 117, 344, 730, 738, 790, 921, 934, 992
SfaNI GCATC 3 cut(s) 121, 223, 473
SfcI CTRYAG 1 cut(s) 737
SinI GGWCC 3 cut(s) 661, 929, 982
SmiMI CAYNNNNRTG 2 cut(s) 708, 941
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
SphI GCATGC 1 cut(s) 84
Sse9I AATT 2 cut(s) 699, 882
SseBI AGGCCT 2 cut(s) 194, 1052
SsiI CCGC 9 cut(s) 36, 108, 213, 230, 263, 276, 392, 548, 1148
SspMI CTAG 1 cut(s) 287
StuI AGGCCT 2 cut(s) 194, 1052
StyD4I CCNGG 4 cut(s) 69, 417, 483, 977
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 4 cut(s) 88, 95, 797, 821
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 1119
TasI AATT 2 cut(s) 699, 882
TatI WGTACW 3 cut(s) 90, 336, 579
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 860, 1074
TscAI CASTG 5 cut(s) 34, 256, 619, 826, 931
TseFI GTSAC 2 cut(s) 296, 815
Tsp45I GTSAC 2 cut(s) 296, 815
TspDTI ATGAA 4 cut(s) 131, 692, 743, 822
TspRI CASTG 5 cut(s) 34, 256, 619, 826, 931
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 3 cut(s) 661, 929, 982
XagI CCTNNNNNAGG 1 cut(s) 416
XceI RCATGY 2 cut(s) 84, 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 1141
XmiI GTMKAC 1 cut(s) 1119
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.