AT3G02470

s-adenosylmethionine decarboxylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
508886 .. 511561
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02470.1

Sequence Viewer

Length: 1101 bp
ATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTGACTTTCTTTGAGCCAAGCATCTTTCAAGACTCCAAGGGACTGGGACTCCGTGCTCTGACCAAGTCCCAGCTTGATGAAATTCTTACACCTGCTGCATGCACGATCGTTTCATCTCTCTCCAACGATCAATTGGACTCTTACGTACTCTCTGAGTCCAGCTTCTTTGTCTACCCCTACAAAGTCATCATCAAGACTTGCGGTACCACTAAGCTCCTCCTCTCTATCCCACCACTTCTAAAGCTGGCTGGTGAGCTCTCTCTGAGTGTCAAGTCTGTGAAGTACACTCGCGGCTCCTTCCTCTGCCCCGGAGGCCAGCCTTTTCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTGATGGGCACTTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATGAGACTAAGAAATGGCATGTCTATGCTGCCTCTGCCCAGGACTCCAGCAACTGCAACAACAATGTCTACACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGCTGCTGTCTTCTACAAGGATGAAGCTGACAAGACTGGGTCAATGACTGATAACTCTGGAATCAGAAAGATCCTTCCCAAGTCTGAGATCTGCGACTTTGAATTCGAGCCCTGCGGCTACTCTATGAACTCAATTGAAGGGGATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTTAGCTACGCTAGCTTCGAAGCTGTGGGTTACGACTTCAACACCCTTGACCTTAGCCAGCTGGTGACAAGGGTTCTCTCTTGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGAGCGTTGGAGCGAACTCATACAAGCCAGAGATTACTGTAGACTTGGAAGACTATGGGTGCAGAGAGAGGACATTTGAGTCTCTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACGTTTGAGAAGCTTGGTAAGTACTGTGGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGCAGCAACAATAGCTGCAGCAGCGAGGACGAGAAGGACGAGGGAATCTAG

Protein Analysis

366

Amino Acids

40.4

Weight (kDa)

4.69

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 7 - 333 5.4e-115 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
AasI GACNNNNNNGTC 1 cut(s) 952
Acc36I ACCTGC 1 cut(s) 148
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 3 cut(s) 219, 534, 915
AccII CGCG 1 cut(s) 339
AciI CCGC 4 cut(s) 249, 339, 379, 690
AclWI GGATC 3 cut(s) 640, 727, 1027
AcsI RAATTY 2 cut(s) 129, 677
AcuI CTGAAG 2 cut(s) 411, 768
AfaI GTAC 4 cut(s) 195, 253, 332, 1013
AfiI CCNNNNNNNGG 1 cut(s) 752
AgsI TTSAA 6 cut(s) 77, 436, 677, 713, 796, 1039
AjnI CCWGG 1 cut(s) 504
Alw21I GWGCWC 3 cut(s) 106, 306, 873
Alw26I GTCTC 3 cut(s) 403, 464, 960
Alw44I GTGCAC 1 cut(s) 869
AlwI GGATC 3 cut(s) 640, 727, 1027
AlwNI CAGNNNCTG 1 cut(s) 519
Ama87I CYCGRG 3 cut(s) 44, 542, 874
AoxI GGCC 2 cut(s) 3, 361
ApaLI GTGCAC 1 cut(s) 869
ApeKI GCWGC 8 cut(s) 143, 381, 494, 578, 1053, 1065, 1068, 1071
ApoI RAATTY 2 cut(s) 129, 677
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
Asp718I GGTACC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 4 cut(s) 61, 311, 368, 832
AsuII TTCGAA 2 cut(s) 24, 774
AsuNHI GCTAGC 1 cut(s) 767
AvaI CYCGRG 3 cut(s) 44, 542, 874
BaeGI GKGCMC 2 cut(s) 417, 873
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 3 cut(s) 306, 687, 849
BbsI GAAGAC 2 cut(s) 577, 930
Bbv12I GWGCWC 3 cut(s) 106, 306, 873
BbvI GCAGC 8 cut(s) 130, 393, 481, 565, 1052, 1065, 1080, 1083
BccI CCATC 3 cut(s) 404, 448, 746
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 506
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 403, 464, 960
BfaI CTAG 4 cut(s) 768, 959, 1026, 1099
BfmI CTRYAG 3 cut(s) 861, 912, 1066
BfuAI ACCTGC 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 360
BglII AGATCT 2 cut(s) 663, 1028
BmcAI AGTACT 1 cut(s) 1013
Bme1390I CCNGG 2 cut(s) 357, 506
BmeT110I CYCGRG 3 cut(s) 44, 542, 874
BmiI GGNNCC 2 cut(s) 253, 343
BmrFI CCNGG 2 cut(s) 357, 506
BmrI ACTGGG 2 cut(s) 101, 621
BmsI GCATC 2 cut(s) 78, 709
BmtI GCTAGC 1 cut(s) 771
BmuI ACTGGG 2 cut(s) 101, 621
BpiI GAAGAC 2 cut(s) 577, 930
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 809
Bpu14I TTCGAA 2 cut(s) 24, 774
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 84, 355, 504
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 3 cut(s) 96, 562, 616
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 84, 355, 504
BseGI GGATG 2 cut(s) 601, 724
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 4 cut(s) 192, 302, 437, 651
BseNI ACTGG 3 cut(s) 96, 562, 616
BseRI GAGGAG 2 cut(s) 254, 257
BseSI GKGCMC 2 cut(s) 417, 873
BseXI GCAGC 8 cut(s) 130, 393, 481, 565, 1052, 1065, 1080, 1083
BseYI CCCAGC 2 cut(s) 117, 427
BsgI GTGCAG 1 cut(s) 955
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 5, 363
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 106, 306, 873
BsiHKCI CYCGRG 3 cut(s) 44, 542, 874
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 3 cut(s) 100, 102, 108
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 3 cut(s) 403, 464, 960
BsmFI GGGAC 3 cut(s) 100, 102, 108
BsnI GGCC 2 cut(s) 5, 363
BsoBI CYCGRG 3 cut(s) 44, 542, 874
Bsp119I TTCGAA 2 cut(s) 24, 774
Bsp1286I GDGCHC 6 cut(s) 106, 306, 417, 687, 849, 873
Bsp143I GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
BspACI CCGC 4 cut(s) 249, 339, 379, 690
BspANI GGCC 2 cut(s) 5, 363
BspCNI CTCAG 4 cut(s) 193, 303, 436, 652
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 253, 343
BspMAI CTGCAG 1 cut(s) 1070
BspMI ACCTGC 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 3 cut(s) 640, 727, 1027
BspT104I TTCGAA 2 cut(s) 24, 774
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 466
BsrI ACTGG 3 cut(s) 96, 562, 616
BssECI CCNNGG 3 cut(s) 84, 355, 504
BssMI GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 3 cut(s) 913, 979, 1016
Bst6I CTCTTC 1 cut(s) 960
BstBAI YACGTR 1 cut(s) 193
BstBI TTCGAA 2 cut(s) 24, 774
BstC8I GCNNGC 5 cut(s) 148, 294, 365, 769, 815
BstDEI CTNAG 7 cut(s) 201, 258, 311, 423, 474, 660, 809
BstF5I GGATG 2 cut(s) 601, 724
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 7 cut(s) 156, 178, 648, 666, 735, 1022, 1031
BstMAI GTCTC 3 cut(s) 403, 464, 960
BstMBI GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 7 cut(s) 11, 360, 438, 500, 768, 1062, 1071
BstNI CCWGG 1 cut(s) 506
BstNSI RCATGY 2 cut(s) 150, 488
BstSCI CCNGG 2 cut(s) 355, 504
BstSFI CTRYAG 3 cut(s) 861, 912, 1066
BstSLI GKGCMC 2 cut(s) 417, 873
BstSNI TACGTA 1 cut(s) 193
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 8 cut(s) 130, 393, 481, 565, 1052, 1065, 1080, 1083
BstV2I GAAGAC 2 cut(s) 577, 930
BstX2I RGATCY 3 cut(s) 645, 663, 1028
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 3 cut(s) 645, 663, 1028
BsuRI GGCC 2 cut(s) 5, 363
BtsCI GGATG 2 cut(s) 601, 724
BtsIMutI CAGTG 1 cut(s) 984
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 5 cut(s) 148, 294, 365, 769, 815
CaiI CAGNNNCTG 1 cut(s) 519
Csp6I GTAC 4 cut(s) 194, 252, 331, 1012
CviAII CATG 4 cut(s) 147, 485, 553, 737
CviQI GTAC 4 cut(s) 194, 252, 331, 1012
DdeI CTNAG 7 cut(s) 201, 258, 311, 423, 474, 660, 809
DpnI GATC 7 cut(s) 155, 177, 647, 665, 734, 1021, 1030
DpnII GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
DrdI GACNNNNNNGTC 1 cut(s) 952
DseDI GACNNNNNNGTC 1 cut(s) 952
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
Ecl136II GAGCTC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 3 cut(s) 306, 687, 849
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 411, 768
Eco88I CYCGRG 3 cut(s) 44, 542, 874
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 3 cut(s) 306, 687, 849
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 4 cut(s) 150, 488, 556, 740
FaiI YATR 8 cut(s) 148, 486, 492, 554, 701, 738, 895, 930
FaqI GGGAC 3 cut(s) 100, 102, 108
FatI CATG 4 cut(s) 146, 484, 552, 736
FblI GTMKAC 3 cut(s) 219, 534, 915
FokI GGATG 2 cut(s) 608, 731
FriOI GRGCYC 3 cut(s) 306, 687, 849
FspBI CTAG 4 cut(s) 768, 959, 1026, 1099
GsaI CCCAGC 2 cut(s) 121, 431
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 2 cut(s) 5, 363
HapII CCGG 1 cut(s) 357
Hin1II CATG 4 cut(s) 150, 488, 556, 740
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 8 cut(s) 80, 96, 185, 203, 509, 636, 953, 1095
HpaII CCGG 1 cut(s) 357
HphI GGTGA 4 cut(s) 61, 311, 368, 832
Hpy166II GTNNAC 5 cut(s) 220, 333, 535, 871, 916
Hpy188I TCNGA 7 cut(s) 108, 202, 312, 391, 641, 661, 990
Hpy188III TCNNGA 7 cut(s) 77, 241, 407, 542, 544, 563, 633
Hpy8I GTNNAC 5 cut(s) 220, 333, 535, 871, 916
HpyAV CCTTC 5 cut(s) 20, 355, 659, 707, 1078
HpyCH4III ACNGT 3 cut(s) 913, 979, 1016
HpyCH4IV ACGT 2 cut(s) 192, 992
HpyCH4V TGCA 9 cut(s) 14, 146, 150, 522, 552, 722, 871, 936, 1068
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 360, 438, 500, 768, 1062, 1071
HpyF3I CTNAG 7 cut(s) 201, 258, 311, 423, 474, 660, 809
HpySE526I ACGT 2 cut(s) 192, 992
Hsp92II CATG 4 cut(s) 150, 488, 556, 740
KpnI GGTACC 1 cut(s) 255
Kzo9I GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
LmnI GCTCC 4 cut(s) 267, 347, 884, 1050
Lsp1109I GCAGC 8 cut(s) 130, 393, 481, 565, 1052, 1065, 1080, 1083
LweI GCATC 2 cut(s) 78, 709
MaeI CTAG 4 cut(s) 768, 959, 1026, 1099
MaeII ACGT 2 cut(s) 192, 992
MaeIII GTNAC 5 cut(s) 29, 49, 739, 785, 820
MalI GATC 7 cut(s) 155, 177, 647, 665, 734, 1021, 1030
MboI GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
MboII GAAGA 5 cut(s) 404, 577, 761, 935, 977
MfeI CAATTG 2 cut(s) 179, 708
MflI RGATCY 3 cut(s) 645, 663, 1028
MhlI GDGCHC 6 cut(s) 106, 306, 417, 687, 849, 873
MluCI AATT 5 cut(s) 129, 179, 677, 708, 854
MlyI GAGTC 6 cut(s) 74, 90, 179, 212, 503, 962
MmeI TCCRAC 2 cut(s) 195, 862
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 2 cut(s) 427, 817
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 357, 506
MunI CAATTG 2 cut(s) 179, 708
MvaI CCWGG 1 cut(s) 506
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 7 cut(s) 11, 360, 438, 500, 768, 1062, 1071
NciI CCSGG 1 cut(s) 357
NdeII GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 4 cut(s) 150, 488, 556, 740
NlaIV GGNNCC 2 cut(s) 253, 343
NmuCI GTSAC 3 cut(s) 49, 739, 820
NspI RCATGY 2 cut(s) 150, 488
NspV TTCGAA 2 cut(s) 24, 774
PaeI GCATGC 1 cut(s) 150
PaeR7I CTCGAG 3 cut(s) 44, 542, 874
PaqCI CACCTGC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 771, 1086
PfeI GAWTC 2 cut(s) 636, 1095
PflFI GACNNNGTC 2 cut(s) 112, 613
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 6 cut(s) 74, 90, 179, 211, 503, 961
PpsI GAGTC 6 cut(s) 74, 90, 179, 211, 503, 961
Ppu21I YACGTR 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 504
PspFI CCCAGC 2 cut(s) 117, 427
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 253, 343
PspXI VCTCGAGB 2 cut(s) 44, 874
PstI CTGCAG 1 cut(s) 1070
PstNI CAGNNNCTG 1 cut(s) 519
PsuI RGATCY 3 cut(s) 645, 663, 1028
PsyI GACNNNGTC 2 cut(s) 112, 613
PvuI CGATCG 1 cut(s) 156
PvuII CAGCTG 2 cut(s) 427, 817
RsaI GTAC 4 cut(s) 195, 253, 332, 1013
RsaNI GTAC 4 cut(s) 194, 252, 331, 1012
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 1 cut(s) 306
Sau3AI GATC 7 cut(s) 153, 175, 645, 663, 732, 1019, 1028
ScaI AGTACT 1 cut(s) 1013
SchI GAGTC 6 cut(s) 74, 90, 179, 212, 503, 962
ScrFI CCNGG 2 cut(s) 357, 506
SduI GDGCHC 6 cut(s) 106, 306, 417, 687, 849, 873
SfaNI GCATC 2 cut(s) 78, 709
SfcI CTRYAG 3 cut(s) 861, 912, 1066
Sfr274I CTCGAG 3 cut(s) 44, 542, 874
SfuI TTCGAA 2 cut(s) 24, 774
SlaI CTCGAG 3 cut(s) 44, 542, 874
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 3 cut(s) 44, 542, 874
SmoI CTYRAG 3 cut(s) 44, 542, 874
SnaBI TACGTA 1 cut(s) 193
SphI GCATGC 1 cut(s) 150
Sse9I AATT 5 cut(s) 129, 179, 677, 708, 854
SsiI CCGC 4 cut(s) 249, 339, 379, 690
SspMI CTAG 4 cut(s) 768, 959, 1026, 1099
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 355, 504
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 913, 979, 1016
TaiI ACGT 2 cut(s) 195, 995
TaqI TCGA 7 cut(s) 24, 45, 543, 681, 774, 843, 875
TasI AATT 5 cut(s) 129, 179, 677, 708, 854
TatI WGTACW 2 cut(s) 330, 1011
TauI GCSGC 2 cut(s) 342, 693
TfiI GAWTC 2 cut(s) 636, 1095
TscAI CASTG 1 cut(s) 984
TseFI GTSAC 3 cut(s) 49, 739, 820
TseI GCWGC 8 cut(s) 143, 381, 494, 578, 1053, 1065, 1068, 1071
Tsp45I GTSAC 3 cut(s) 49, 739, 820
TspDTI ATGAA 4 cut(s) 141, 150, 612, 716
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 984
Tth111I GACNNNGTC 2 cut(s) 112, 613
VneI GTGCAC 1 cut(s) 869
XapI RAATTY 2 cut(s) 129, 677
XceI RCATGY 2 cut(s) 150, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XhoI CTCGAG 3 cut(s) 44, 542, 874
XmiI GTMKAC 3 cut(s) 219, 534, 915
XspI CTAG 4 cut(s) 768, 959, 1026, 1099
ZrmI AGTACT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.