Rh2DG593900

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008254
Physical Location & Seq
Forward (+)
82687090 .. 82689786
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG593900.1

Sequence Viewer

Length: 1116 bp
ATGGCTGTACCGGTGTCTGCAATCGGATTTGAAGGATATGAAAAGAGGCTCGAGGTCTGTTTCTTCGAGCCAGGACTGTTTGCTGACCCTAATGGCATGGGTCTCCGCACTTTGTCAAAAACTCAAATTGATGAGATTCTGAAACCAGCTGAATGCACCATTGTTTCATCACTGTCGAATGATGATCTGGACTCGTATGTCCTTTCGGAATCCAGCCTCTTTGTGTACCCATACAAAGTTATCATCAAAACTTGCGGGACAACGAAATTGCTTCGCTCAATTCCTGCCATTCTTAAGTTGGCAGAGACTCTCTCACTCGCCGTGAGATCTGTGAGGTACTCTCGTGGAAGCTTCATATTTCCTGGTGCTCAGCCTTCCCCACATCGTAGCTTCTCAGAGGAAGTATCTGTCCTTGATGGCCATTTTGGCAAGCTTGGTTTGGCAAGCAGAGCCTACGTTATGGGTAGCCCTGACAATGCAAAGAAATGGCATGTTTACTCTGCCTCGGCGGAGTTGGCAAGTTTATTCTGGGGAGCACGCCCCTCAGGCCCCATCTACACTCTTGAGATGTGCATGACTGGCTTGGACAGGAAGAAGGCATCTGTGTTTTACAAGACAAATGCAAGTTCAGCTGCTATTATGACTGAAGATTCTGGCATCAGGAAGATTCTCCCAAAGTCTGAAATATGTGACTTTGAGTTTGATCCTTGCGGCTACTCTATGAACTCTATCGAAGGGGATGCAATTTCTACCATTCATGTGACACCTGAAGACGGCTTCAGCTATGCTAGCTTTGAAACAGTGGGCTACAACTTCAAGGATGTGAACTTGACCCATCTGATCAAGAGGGTTCTGGATTGCTTCAAACCAGCTGAGTTCTCTGTGTCTCTGCATTCCACCATTGCCGCAAGTGAAGAACTTGAGTTTCCCCTGGAATTGAGCGGATACTGTTGCGGATCAACAAACTATGAAGAACTGGGTCTAGGAGGTGCAGTCATCTACCACAGCTTTGCCAAGGACGAAGGTTCTCAGTCTCCAAGGTCAATTCTAAAATGCTGCTGGAGCGAGGACGAGAAGGACGAGGAAGTTGAAGAGGAAGTTCTGGACAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

371

Amino Acids

40.81

Weight (kDa)

4.92

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 9 - 337 2.4e-116 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 942
AciI CCGC 7 cut(s) 106, 255, 509, 711, 906, 942, 954
AclWI GGATC 2 cut(s) 698, 964
AcoI YGGCCR 1 cut(s) 418
AcuI CTGAAG 3 cut(s) 666, 763, 789
AfaI GTAC 3 cut(s) 9, 227, 338
AfiI CCNNNNNNNGG 1 cut(s) 773
AflII CTTAAG 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 5 cut(s) 32, 797, 817, 865, 1091
AjnI CCWGG 3 cut(s) 70, 361, 930
AluBI AGCT 9 cut(s) 149, 351, 390, 433, 632, 783, 792, 872, 1008
AluI AGCT 9 cut(s) 149, 351, 390, 433, 632, 783, 792, 872, 1008
Alw21I GWGCWC 2 cut(s) 370, 538
Alw26I GTCTC 4 cut(s) 107, 299, 891, 1038
AlwI GGATC 2 cut(s) 698, 964
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 2 cut(s) 418, 547
ApeKI GCWGC 2 cut(s) 632, 1056
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AsiGI ACCGGT 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 548
AsuNHI GCTAGC 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 420
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 2 cut(s) 370, 538
BbvI GCAGC 2 cut(s) 619, 1043
BccI CCATC 3 cut(s) 410, 560, 843
BceAI ACGGC 2 cut(s) 305, 790
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 3 cut(s) 72, 363, 932
BciVI GTATCC 1 cut(s) 938
BclI TGATCA 1 cut(s) 840
BcoDI GTCTC 4 cut(s) 107, 299, 891, 1038
BfaI CTAG 3 cut(s) 789, 983, 1114
BfrI CTTAAG 1 cut(s) 293
BfuI GTATCC 1 cut(s) 938
BglI GCCNNNNNGGC 2 cut(s) 426, 546
BglII AGATCT 1 cut(s) 326
BisI GCNGC 4 cut(s) 633, 712, 906, 1057
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 4 cut(s) 634, 713, 907, 1058
Bme1390I CCNGG 3 cut(s) 72, 363, 932
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 3 cut(s) 72, 363, 932
BmrI ACTGGG 1 cut(s) 986
BmsI GCATC 3 cut(s) 608, 666, 730
BmtI GCTAGC 1 cut(s) 792
BmuI ACTGGG 1 cut(s) 986
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 325, 357
BpmI CTGGAG 1 cut(s) 1081
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 584, 941
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 504, 930, 1014, 1037
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 1 cut(s) 773
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 583, 981
Bse21I CCTNAGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 3 cut(s) 72, 363, 932
BseDI CCNNGG 4 cut(s) 504, 930, 1014, 1037
BseGI GGATG 2 cut(s) 745, 826
BseLI CCNNNNNNNGG 1 cut(s) 773
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 5 cut(s) 383, 408, 558, 864, 1043
BseNI ACTGG 2 cut(s) 583, 981
BseXI GCAGC 2 cut(s) 619, 1043
BsgI GTGCAG 1 cut(s) 1011
BshFI GGCC 2 cut(s) 420, 549
BshTI ACCGGT 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 370, 538
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 773
BsmAI GTCTC 4 cut(s) 107, 299, 891, 1038
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 2 cut(s) 158, 892
BsnI GGCC 2 cut(s) 420, 549
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 370, 538
Bsp143I GATC 5 cut(s) 184, 326, 703, 840, 956
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 7 cut(s) 106, 255, 509, 711, 906, 942, 954
BspANI GGCC 2 cut(s) 420, 549
BspCNI CTCAG 5 cut(s) 382, 407, 557, 865, 1042
BspLI GGNNCC 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 792
BspPI GGATC 2 cut(s) 698, 964
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 942
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 2 cut(s) 583, 981
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 4 cut(s) 504, 930, 1014, 1037
BssMI GATC 5 cut(s) 184, 326, 703, 840, 956
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 1014, 1037
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 3 cut(s) 72, 363, 932
Bst4CI ACNGT 4 cut(s) 78, 174, 802, 950
Bst6I CTCTTC 1 cut(s) 1086
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 4 cut(s) 431, 445, 538, 790
BstDEI CTNAG 5 cut(s) 369, 394, 544, 873, 1029
BstF5I GGATG 2 cut(s) 745, 826
BstKTI GATC 5 cut(s) 187, 329, 706, 843, 959
BstMAI GTCTC 4 cut(s) 107, 299, 891, 1038
BstMBI GATC 5 cut(s) 184, 326, 703, 840, 956
BstMWI GCNNNNNNNGC 8 cut(s) 426, 449, 515, 546, 579, 629, 789, 1062
BstNI CCWGG 3 cut(s) 72, 363, 932
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 3 cut(s) 70, 361, 930
BstV1I GCAGC 2 cut(s) 619, 1043
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 544
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 2 cut(s) 420, 549
BtsCI GGATG 2 cut(s) 745, 826
BtsIMutI CAGTG 2 cut(s) 170, 807
Cac8I GCNNGC 4 cut(s) 431, 445, 538, 790
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 8, 226, 337
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 4 cut(s) 97, 491, 574, 758
CviQI GTAC 3 cut(s) 8, 226, 337
DdeI CTNAG 5 cut(s) 369, 394, 544, 873, 1029
DpnI GATC 5 cut(s) 186, 328, 705, 842, 958
DpnII GATC 5 cut(s) 184, 326, 703, 840, 956
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
EciI GGCGGA 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 1014, 1037
Eco31I GGTCTC 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 666, 763, 789
Eco81I CCTNAGG 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 70, 361, 930
EcoT14I CCWWGG 2 cut(s) 1014, 1037
ErhI CCWWGG 2 cut(s) 1014, 1037
FaeI CATG 4 cut(s) 100, 494, 577, 761
FaqI GGGAC 1 cut(s) 271
FatI CATG 4 cut(s) 96, 490, 573, 757
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 633, 712, 906, 1057
FokI GGATG 2 cut(s) 752, 833
Fsp4HI GCNGC 4 cut(s) 633, 712, 906, 1057
FspBI CTAG 3 cut(s) 789, 983, 1114
GluI GCNGC 4 cut(s) 633, 712, 906, 1057
GsuI CTGGAG 1 cut(s) 1081
HaeIII GGCC 2 cut(s) 420, 549
HapII CCGG 1 cut(s) 11
Hin1II CATG 4 cut(s) 100, 494, 577, 761
HindIII AAGCTT 2 cut(s) 349, 431
HinfI GANTC 6 cut(s) 136, 191, 209, 307, 650, 667
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 3 cut(s) 226, 496, 826
Hpy188I TCNGA 6 cut(s) 26, 141, 208, 397, 682, 840
Hpy188III TCNNGA 6 cut(s) 188, 563, 661, 844, 854, 1103
Hpy8I GTNNAC 3 cut(s) 226, 496, 826
HpyAV CCTTC 6 cut(s) 26, 384, 589, 728, 1016, 1069
HpyCH4III ACNGT 4 cut(s) 78, 174, 802, 950
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 8 cut(s) 20, 156, 479, 573, 623, 743, 892, 992
HpyF10VI GCNNNNNNNGC 8 cut(s) 426, 449, 515, 546, 579, 629, 789, 1062
HpyF3I CTNAG 5 cut(s) 369, 394, 544, 873, 1029
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 4 cut(s) 100, 494, 577, 761
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 5 cut(s) 184, 326, 703, 840, 956
LmnI GCTCC 2 cut(s) 533, 1062
Lsp1109I GCAGC 2 cut(s) 619, 1043
LweI GCATC 3 cut(s) 608, 666, 730
MaeI CTAG 3 cut(s) 789, 983, 1114
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 689, 760
MalI GATC 5 cut(s) 186, 328, 705, 842, 958
MbiI CCGCTC 1 cut(s) 942
MboI GATC 5 cut(s) 184, 326, 703, 840, 956
MboII GAAGA 8 cut(s) 55, 604, 659, 676, 782, 926, 983, 1103
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 370, 538
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 6 cut(s) 126, 266, 279, 744, 935, 1044
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 185, 301
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 758
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 3 cut(s) 149, 632, 872
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 3 cut(s) 72, 363, 932
Mva1269I GAATGC 2 cut(s) 158, 892
MvaI CCWGG 3 cut(s) 72, 363, 932
MwoI GCNNNNNNNGC 8 cut(s) 426, 449, 515, 546, 579, 629, 789, 1062
NdeII GATC 5 cut(s) 184, 326, 703, 840, 956
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 4 cut(s) 100, 494, 577, 761
NlaIV GGNNCC 1 cut(s) 550
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 689, 760
NspI RCATGY 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PctI GAATGC 2 cut(s) 158, 892
PfeI GAWTC 4 cut(s) 136, 209, 650, 667
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 4 cut(s) 634, 713, 907, 1058
PleI GAGTC 2 cut(s) 185, 301
PpsI GAGTC 2 cut(s) 185, 301
Psp6I CCWGG 3 cut(s) 70, 361, 930
PspGI CCWGG 3 cut(s) 70, 361, 930
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 50
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 3 cut(s) 149, 632, 872
RsaI GTAC 3 cut(s) 9, 227, 338
RsaNI GTAC 3 cut(s) 8, 226, 337
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 633, 712, 906, 1057
Sau3AI GATC 5 cut(s) 184, 326, 703, 840, 956
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 2 cut(s) 185, 301
ScrFI CCNGG 3 cut(s) 72, 363, 932
SduI GDGCHC 2 cut(s) 370, 538
SfaNI GCATC 3 cut(s) 608, 666, 730
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 4 cut(s) 50, 293, 563, 920
SmoI CTYRAG 4 cut(s) 50, 293, 563, 920
Sse9I AATT 6 cut(s) 126, 266, 279, 744, 935, 1044
SsiI CCGC 7 cut(s) 106, 255, 509, 711, 906, 942, 954
SspMI CTAG 3 cut(s) 789, 983, 1114
StyD4I CCNGG 3 cut(s) 70, 361, 930
StyI CCWWGG 2 cut(s) 1014, 1037
TaaI ACNGT 4 cut(s) 78, 174, 802, 950
TaiI ACGT 1 cut(s) 459
TaqI TCGA 4 cut(s) 51, 66, 176, 732
TasI AATT 6 cut(s) 126, 266, 279, 744, 935, 1044
TauI GCSGC 2 cut(s) 714, 908
TfiI GAWTC 4 cut(s) 136, 209, 650, 667
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 177, 807
TseFI GTSAC 2 cut(s) 689, 760
TseI GCWGC 2 cut(s) 632, 1056
Tsp45I GTSAC 2 cut(s) 689, 760
TspDTI ATGAA 6 cut(s) 54, 156, 343, 737, 746, 984
TspRI CASTG 2 cut(s) 177, 807
Vha464I CTTAAG 1 cut(s) 293
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 3 cut(s) 789, 983, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.