Prupe.3G243900_v2.0.a1

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008254
Physical Location & Seq
Forward (+)
23632601 .. 23634057
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G243900.1

Sequence Viewer

Length: 1125 bp
ATGGCTGTACCGGTCTCTGCAATTGGATTTGAAGGCTATGAAAAGAGGCTCGAGGTCTCATTCTTCGAGCCTGGACTGTTTGCTGACCCTGCCGGCATGGGTCTCCGTTCTCTGTCGAAAGATCAATTGGATGAGATTCTGAAACCAGCTGAGTGCACCATTGTTTCCTCACTCTCTAATGATGATCTGGACTCTTATGTCCTTTCGGAATCGAGCCTCTTTGTGTACCCATACAAAGTGATCATCAAAACCTGTGGAACAACAAAATTGCTTCGATCAATCCCTGCCATCCTCAAGTTGGCTGAGACTCTCTCCTTGGCTGTAAAATCAGTGAGGTACTCTCGTGGGAGCTTTATATTTCCTGGTGCTCAGCCCTCTCCACATCGTAGCTTTTCAGAGGAAGTAGCTGTCCTTGATGGCCATTTTGGCAAGCTTGGTTTGGCAAGCAGAGCATATGTTATGGGTAGCTCTGACAAAACACAGAAATGGCATATTTACTCTGCATCGGCAGAGTTGGCAAGCTTACTTTGGGGCGCACGCCAATCAGGACCCACATACACATTGGAGATGTGCATGACTGGTTTGAACAGGAAGAAGGCATCTGTGTTTTACAAATCAAAGGCAAGTTCAGCTGCTGGTATGACTGAAGAATCTGGCATTAGGAAGATCCTCCCCCAGTCTGAAATATGTGACTTTGAGTTTGATCCTTGTGGTTACTCCATGAATTCGATTGAAGGGAATGCAATTTCTACCATCCATGTGACACCAGAAGACGGTTTCAGCTACGCGAGCTTTGAAACAATGGGATACGACTTCAAAAATGTGAACTTGACCCAGCTGATTGACAGGGTTTTGGATTGTTTCAAACCGGCTGAGTTCTCCGTCGCTTTGCATACCACCAGTACTGCAGGCGAACAACTCAACGCTAAGTTCCCCCTGGATGACTTGAGGGGATACTGTTGCGGAGAAAGCAACTATGAGAGGCTGGGTTTGGGTGGTGCTGTCATCTTCCACAGCTTTGTCAAGGATGCAGGTTGCCAGTCTCCAAGGTCAATTCTGAAAGGTTGCTGGAGCGAGGACGAGAAGGACGAGGAAGTTGAAGAGATAGTTATGGACAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

375

Amino Acids

41.01

Weight (kDa)

5.12

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 1022
AccII CGCG 1 cut(s) 788
AciI CCGC 1 cut(s) 963
AclWI GGATC 2 cut(s) 661, 698
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 4 cut(s) 9, 227, 338, 904
AfiI CCNNNNNNNGG 2 cut(s) 298, 773
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 7 cut(s) 32, 586, 734, 797, 817, 865, 1100
AjnI CCWGG 3 cut(s) 70, 361, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
Alw21I GWGCWC 2 cut(s) 158, 370
Alw26I GTCTC 5 cut(s) 19, 61, 107, 299, 1047
Alw44I GTGCAC 1 cut(s) 154
AlwI GGATC 2 cut(s) 661, 698
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 1 cut(s) 418
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 1 cut(s) 724
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AsiGI ACCGGT 1 cut(s) 10
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 420
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 2 cut(s) 158, 370
BbvI GCAGC 1 cut(s) 619
BccI CCATC 3 cut(s) 296, 410, 761
BciT130I CCWGG 3 cut(s) 72, 363, 938
BciVI GTATCC 2 cut(s) 800, 947
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 5 cut(s) 19, 61, 107, 299, 1047
BfaI CTAG 1 cut(s) 1123
BfmI CTRYAG 1 cut(s) 906
BfuAI ACCTGC 1 cut(s) 1022
BfuI GTATCC 2 cut(s) 800, 947
BglI GCCNNNNNGGC 1 cut(s) 426
BglII AGATCT 1 cut(s) 1119
BisI GCNGC 1 cut(s) 633
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 634
BmcAI AGTACT 1 cut(s) 904
Bme1390I CCNGG 3 cut(s) 72, 363, 938
Bme18I GGWCC 1 cut(s) 548
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 3 cut(s) 72, 363, 938
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 3 cut(s) 512, 608, 1018
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 325, 357
BpmI CTGGAG 1 cut(s) 1090
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 278, 967
BsaI GGTCTC 3 cut(s) 19, 61, 107
BsaJI CCNNGG 3 cut(s) 315, 936, 1046
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 773
Bse118I RCCGGY 3 cut(s) 10, 92, 868
Bse1I ACTGG 4 cut(s) 583, 676, 900, 1039
BseBI CCWGG 3 cut(s) 72, 363, 938
BseDI CCNNGG 3 cut(s) 315, 936, 1046
BseGI GGATG 5 cut(s) 136, 288, 753, 946, 1033
BseLI CCNNNNNNNGG 2 cut(s) 298, 773
BseMII CTCAG 4 cut(s) 141, 294, 383, 864
BseNI ACTGG 4 cut(s) 583, 676, 900, 1039
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 2 cut(s) 834, 985
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 1 cut(s) 420
BshTI ACCGGT 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 158, 370
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 3 cut(s) 11, 93, 869
BslI CCNNNNNNNGG 2 cut(s) 298, 773
BsmAI GTCTC 5 cut(s) 19, 61, 107, 299, 1047
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 1 cut(s) 420
Bso31I GGTCTC 3 cut(s) 19, 61, 107
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 158, 370
Bsp143I GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 1 cut(s) 963
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 4 cut(s) 142, 295, 382, 865
BspFNI CGCG 1 cut(s) 788
BspLI GGNNCC 1 cut(s) 550
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 1022
BspPI GGATC 2 cut(s) 661, 698
BspTNI GGTCTC 3 cut(s) 19, 61, 107
BsrFI RCCGGY 3 cut(s) 10, 92, 868
BsrI ACTGG 4 cut(s) 583, 676, 900, 1039
BssAI RCCGGY 3 cut(s) 10, 92, 868
BssECI CCNNGG 3 cut(s) 315, 936, 1046
BssMI GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 315, 1046
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 3 cut(s) 72, 363, 938
Bst4CI ACNGT 3 cut(s) 78, 776, 959
Bst6I CTCTTC 1 cut(s) 1095
BstC8I GCNNGC 7 cut(s) 94, 431, 445, 520, 538, 790, 910
BstDEI CTNAG 5 cut(s) 150, 303, 369, 873, 927
BstF5I GGATG 5 cut(s) 136, 288, 753, 946, 1033
BstFNI CGCG 1 cut(s) 788
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 7 cut(s) 124, 187, 243, 278, 669, 706, 1122
BstMAI GTCTC 5 cut(s) 19, 61, 107, 299, 1047
BstMBI GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
BstMWI GCNNNNNNNGC 7 cut(s) 89, 426, 449, 515, 629, 789, 969
BstNI CCWGG 3 cut(s) 72, 363, 938
BstSCI CCNGG 3 cut(s) 70, 361, 936
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 1 cut(s) 619
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 2 cut(s) 666, 1119
BstYI RGATCY 2 cut(s) 666, 1119
BsuI GTATCC 2 cut(s) 800, 947
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 5 cut(s) 136, 288, 753, 946, 1033
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 7 cut(s) 94, 431, 445, 520, 538, 790, 910
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 3 cut(s) 10, 92, 868
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 4 cut(s) 8, 226, 337, 903
CspAI ACCGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 4 cut(s) 97, 574, 721, 758
CviQI GTAC 4 cut(s) 8, 226, 337, 903
DdeI CTNAG 5 cut(s) 150, 303, 369, 873, 927
DpnI GATC 7 cut(s) 123, 186, 242, 277, 668, 705, 1121
DpnII GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
Eco130I CCWWGG 2 cut(s) 315, 1046
Eco31I GGTCTC 3 cut(s) 19, 61, 107
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 548
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 3 cut(s) 70, 361, 936
EcoT14I CCWWGG 2 cut(s) 315, 1046
ErhI CCWWGG 2 cut(s) 315, 1046
FaeI CATG 4 cut(s) 100, 577, 724, 761
FatI CATG 4 cut(s) 96, 573, 720, 757
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 5 cut(s) 143, 275, 740, 953, 1040
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 1 cut(s) 1123
GlaI GCGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 633
GsaI CCCAGC 2 cut(s) 838, 989
GsuI CTGGAG 1 cut(s) 1090
HaeIII GGCC 1 cut(s) 420
HapII CCGG 3 cut(s) 11, 93, 869
HhaI GCGC 1 cut(s) 536
Hin1II CATG 4 cut(s) 100, 577, 724, 761
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 2 cut(s) 431, 520
HinfI GANTC 5 cut(s) 136, 191, 209, 307, 650
HpaII CCGG 3 cut(s) 11, 93, 869
Hpy166II GTNNAC 3 cut(s) 156, 226, 826
Hpy188I TCNGA 6 cut(s) 141, 208, 397, 472, 682, 1059
Hpy188III TCNNGA 2 cut(s) 188, 546
Hpy8I GTNNAC 3 cut(s) 156, 226, 826
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 4 cut(s) 26, 589, 728, 1078
HpyCH4III ACNGT 3 cut(s) 78, 776, 959
HpyCH4V TGCA 8 cut(s) 20, 156, 503, 573, 743, 892, 908, 1031
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 426, 449, 515, 629, 789, 969
HpyF3I CTNAG 5 cut(s) 150, 303, 369, 873, 927
Hsp92II CATG 4 cut(s) 100, 577, 724, 761
HspAI GCGC 1 cut(s) 534
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
LmnI GCTCC 2 cut(s) 348, 1071
Lsp1109I GCAGC 1 cut(s) 619
LweI GCATC 3 cut(s) 512, 608, 1018
MaeI CTAG 1 cut(s) 1123
MaeIII GTNAC 3 cut(s) 689, 713, 760
MalI GATC 7 cut(s) 123, 186, 242, 277, 668, 705, 1121
MboI GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
MboII GAAGA 7 cut(s) 55, 604, 659, 676, 782, 1000, 1112
MfeI CAATTG 2 cut(s) 21, 125
MflI RGATCY 2 cut(s) 666, 1119
MhlI GDGCHC 2 cut(s) 158, 370
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 6 cut(s) 21, 125, 266, 724, 744, 1053
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 185, 301
Mox20I TGGCCA 1 cut(s) 420
MroNI GCCGGC 1 cut(s) 92
MscI TGGCCA 1 cut(s) 420
MslI CAYNNNNRTG 2 cut(s) 484, 758
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 3 cut(s) 149, 632, 838
MspI CCGG 3 cut(s) 11, 93, 869
MspR9I CCNGG 3 cut(s) 72, 363, 938
MunI CAATTG 2 cut(s) 21, 125
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 3 cut(s) 72, 363, 938
MvnI CGCG 1 cut(s) 788
MwoI GCNNNNNNNGC 7 cut(s) 89, 426, 449, 515, 629, 789, 969
NaeI GCCGGC 1 cut(s) 94
NdeI CATATG 1 cut(s) 454
NdeII GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 100, 577, 724, 761
NlaIV GGNNCC 1 cut(s) 550
NmuCI GTSAC 2 cut(s) 689, 760
PaeR7I CTCGAG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PctI GAATGC 1 cut(s) 745
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 136, 209, 650
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 2 cut(s) 185, 301
PpsI GAGTC 2 cut(s) 185, 301
PpuMI RGGWCCY 1 cut(s) 548
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 3 cut(s) 70, 361, 936
PspFI CCCAGC 2 cut(s) 834, 985
PspGI CCWGG 3 cut(s) 70, 361, 936
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 548
PspPPI RGGWCCY 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 50
PstI CTGCAG 1 cut(s) 910
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 666, 1119
PvuII CAGCTG 3 cut(s) 149, 632, 838
RsaI GTAC 4 cut(s) 9, 227, 338, 904
RsaNI GTAC 4 cut(s) 8, 226, 337, 903
RseI CAYNNNNRTG 2 cut(s) 484, 758
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 7 cut(s) 121, 184, 240, 275, 666, 703, 1119
Sau96I GGNCC 1 cut(s) 548
ScaI AGTACT 1 cut(s) 904
SchI GAGTC 2 cut(s) 185, 301
ScrFI CCNGG 3 cut(s) 72, 363, 938
SduI GDGCHC 2 cut(s) 158, 370
SfaNI GCATC 3 cut(s) 512, 608, 1018
SfcI CTRYAG 1 cut(s) 906
Sfr274I CTCGAG 1 cut(s) 50
SinI GGWCC 1 cut(s) 548
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 484, 758
SmlI CTYRAG 3 cut(s) 50, 293, 946
SmoI CTYRAG 3 cut(s) 50, 293, 946
Sse9I AATT 6 cut(s) 21, 125, 266, 724, 744, 1053
SsiI CCGC 1 cut(s) 963
SspMI CTAG 1 cut(s) 1123
StyD4I CCNGG 3 cut(s) 70, 361, 936
StyI CCWWGG 2 cut(s) 315, 1046
TaaI ACNGT 3 cut(s) 78, 776, 959
TaqI TCGA 6 cut(s) 51, 66, 116, 212, 274, 728
TasI AATT 6 cut(s) 21, 125, 266, 724, 744, 1053
TatI WGTACW 1 cut(s) 902
TfiI GAWTC 3 cut(s) 136, 209, 650
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 2 cut(s) 689, 760
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 2 cut(s) 689, 760
TspDTI ATGAA 2 cut(s) 54, 737
TspGWI ACGGA 2 cut(s) 95, 871
TspRI CASTG 1 cut(s) 336
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 559
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 1 cut(s) 1123
ZrmI AGTACT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.