Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008254

Physical Location & Seq

Genomic Coordinates Forward (+)

5205869 .. 5208036

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCATGTCTGCTATTGGCTTCGAAGGTTACGAGAAGCGGCTTGAAGTTACTTTCTTTGAGCCTGGTCTCTTTCTTGACACTCAAGGAAAAGGGCTACGTGCTTTAGCTAAGTCTCAGATCGATGAGATTCTTCAGCCAGCTGAGTGCACTATCGTCTCATCTCTCTCGAACGATCAGCTTGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCGTACAAGATCGTCATCAAGACTTGCGGTACTACTAAGCTCCTCCTCTCTATTGAGCCTCTCTTGAGGTTAGCCGGTGAGCTTTCTCTTGACGTTAAGGCTGTGAGGTACACTCGTGGAAGTTTCCTCTGTCCTGGAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTTCTTGATGGTCACTTTGCTAAGCTTGGTTTAAGCAGTGTTGCCTACTTGATGGGCAATGACGATGAAACCAAGAAATGGCATGTTTACTCTGCTTCTTCTGCCAACAGCAACAACAAGAACAATGTCTACACGCTTGAGATGTGTATGACTGGTCTAGACAAAGACAAGGCATCTGTCTTCTACAAGAACGAGTCAAGCTCTGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTGCCTCAATCCCAAATCTGTGACTTTGAGTTTGAGCCCTGTGGCTACTCAATGAACAGCATCGAAGGCGACGCAATCTCTACCATCCATGTAACTCCAGAGGATGGTTTCAGCTACGCTAGCTTTGAAGCAGTGGGATATGATTTCACAACCATGGACTTGAGCCATCTTGTCTCAAAGGTACTAACTTGCTTCAAACCAAAACAATTCTCTGTAGCTGTCCACTCGACCGTGGCACAGAAGAGCTACGACTCTGGTCTCTCTGTGGACCTAGACGATTACGGATGCAAAGAGTCAACAATGGAGTCTCTAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTAGGAAGGTATTGTGGTTCTCCGAGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGGACGAGAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016032 GO:0016458 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0019058 GO:0019079 GO:0019222 GO:0032501 GO:0032502 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048731 GO:0048856 GO:0050789 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

SAM_decarbox

Protein Analysis

362

Amino Acids

40.01

Weight (kDa)

4.95

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_decarbox	PF01536	7 - 332	7.1e-115	Adenosylmethionine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02470 AT3G02470 AT3G02470 AT5G15950 AT5G15950
fragaria_vesca	FvH4_6g45760 FvH4_6g45760 FvH4_6g45760
malus_domestica	MD09G1079800.v1.1 MD17G1070300.v1.1
prunus_persica	Prupe.3G243900_v2.0.a1
pyrus_communis	pycom09g00660 pycom17g07030
rosa_chinensis	RchiOBHm_Chr2g0163961
rosa_laevigata	RLG00000021429
rosa_multiflora	Rmu_ssc0000432.1_g000023
rosa_roxburghii	Rroxscaffold_2G00086890
rosa_rugosa	Rorug02G0505200
rosa_samantha	Rh2AG573800 Rh2BG584600 Rh2CG555500 Rh2DG593900
rosa_wichuraiana	Rw2G047460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	480, 749
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	3 cut(s)	40, 249, 379
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	119, 411
AfaI	GTAC	4 cut(s)	227, 253, 332, 828
AfiI	CCNNNNNNNGG	2 cut(s)	480, 749
AgsI	TTSAA	4 cut(s)	47, 773, 841, 1036
AjnI	CCWGG	2 cut(s)	64, 355
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	8 cut(s)	74, 120, 163, 215, 403, 823, 908, 957
Alw44I	GTGCAC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	1062
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	1050, 1062
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspS9I	GGNCC	1 cut(s)	913
AsuHPI	GGTGA	2 cut(s)	311, 368
AsuII	TTCGAA	1 cut(s)	24
AsuNHI	GCTAGC	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	913
BaeGI	GKGCMC	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	1049, 1062
BccI	CCATC	5 cut(s)	404, 448, 737, 743, 819
BciT130I	CCWGG	2 cut(s)	66, 357
BcoDI	GTCTC	8 cut(s)	74, 120, 163, 215, 403, 823, 908, 957
BfaI	CTAG	5 cut(s)	560, 765, 917, 956, 1001
BfmI	CTRYAG	1 cut(s)	858
BglII	AGATCT	1 cut(s)	1025
BisI	GCNGC	3 cut(s)	41, 1051, 1063
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	3 cut(s)	42, 1052, 1064
Bme1390I	CCNGG	2 cut(s)	66, 357
Bme18I	GGWCC	1 cut(s)	913
BmgT120I	GGNCC	1 cut(s)	913
BmrFI	CCNGG	2 cut(s)	66, 357
BmsI	GCATC	4 cut(s)	584, 642, 714, 920
BmtI	GCTAGC	1 cut(s)	768
BoxI	GACNNNNGTC	1 cut(s)	900
BpiI	GAAGAC	1 cut(s)	574
BplI	GAGNNNNNCTC	4 cut(s)	319, 351, 587, 619
BpmI	CTGGAG	2 cut(s)	378, 726
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	4 cut(s)	69, 307, 560, 826
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	236
BsaI	GGTCTC	2 cut(s)	74, 908
BsaJI	CCNNGG	2 cut(s)	798, 876
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 749
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	207, 559
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	66, 357
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	798, 876
BseGI	GGATG	3 cut(s)	729, 754, 935
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	480, 749
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	3 cut(s)	131, 135, 192
BseNI	ACTGG	2 cut(s)	207, 559
BseRI	GAGGAG	2 cut(s)	254, 257
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	1049, 1062
Bsh1285I	CGRYCG	1 cut(s)	876
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	876
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	480, 749
BsmAI	GTCTC	8 cut(s)	74, 120, 163, 215, 403, 823, 908, 957
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	74, 908
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	152, 684
Bsp143I	GATC	4 cut(s)	120, 175, 231, 1025
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	798
BspACI	CCGC	3 cut(s)	40, 249, 379
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	130, 136, 193
BspDI	ATCGAT	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	768
BspQI	GCTCTTC	1 cut(s)	881
BspT104I	TTCGAA	1 cut(s)	24
BspTNI	GGTCTC	2 cut(s)	74, 908
BsrDI	GCAATG	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	207, 559
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	798, 876
BssMI	GATC	4 cut(s)	120, 175, 231, 1025
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	798
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	66, 357
Bst4CI	ACNGT	3 cut(s)	877, 976, 1058
Bst6I	CTCTTC	2 cut(s)	881, 957
BstBAI	YACGTR	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	141, 766
BstDEI	CTNAG	6 cut(s)	111, 117, 144, 201, 258, 423
BstDSI	CCRYGG	2 cut(s)	798, 876
BstF5I	GGATG	3 cut(s)	729, 754, 935
BstKTI	GATC	4 cut(s)	123, 178, 234, 1028
BstMAI	GTCTC	8 cut(s)	74, 120, 163, 215, 403, 823, 908, 957
BstMBI	GATC	4 cut(s)	120, 175, 231, 1025
BstMCI	CGRYCG	1 cut(s)	876
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 503, 711, 765, 1059, 1068
BstNI	CCWGG	2 cut(s)	66, 357
BstNSI	RCATGY	1 cut(s)	488
BstPAI	GACNNNNGTC	1 cut(s)	900
BstSCI	CCNGG	2 cut(s)	64, 355
BstSFI	CTRYAG	1 cut(s)	858
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	1049, 1062
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	1025
BstYI	RGATCY	1 cut(s)	1025
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	2 cut(s)	798, 876
BtsCI	GGATG	3 cut(s)	729, 754, 935
BtsI	GCAGTG	2 cut(s)	445, 783
BtsIMutI	CAGTG	3 cut(s)	445, 783, 981
Cac8I	GCNNGC	2 cut(s)	141, 766
CaiI	CAGNNNCTG	1 cut(s)	1062
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	913
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	4 cut(s)	226, 252, 331, 827
CviAII	CATG	4 cut(s)	7, 485, 734, 799
CviQI	GTAC	4 cut(s)	226, 252, 331, 827
DdeI	CTNAG	6 cut(s)	111, 117, 144, 201, 258, 423
DpnI	GATC	4 cut(s)	122, 177, 233, 1027
DpnII	GATC	4 cut(s)	120, 175, 231, 1025
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	881, 957
EarI	CTCTTC	2 cut(s)	881, 957
Eco130I	CCWWGG	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	2 cut(s)	74, 908
Eco47I	GGWCC	1 cut(s)	913
Eco57I	CTGAAG	2 cut(s)	119, 411
EcoRII	CCWGG	2 cut(s)	64, 355
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	4 cut(s)	10, 488, 737, 802
FaiI	YATR	8 cut(s)	8, 192, 486, 551, 617, 735, 786, 800
FatI	CATG	4 cut(s)	6, 484, 733, 798
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	41, 1051, 1063
FokI	GGATG	3 cut(s)	716, 761, 942
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	3 cut(s)	41, 1051, 1063
FspBI	CTAG	5 cut(s)	560, 765, 917, 956, 1001
GluI	GCNGC	3 cut(s)	41, 1051, 1063
GsuI	CTGGAG	2 cut(s)	378, 726
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	4 cut(s)	10, 488, 737, 802
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	7 cut(s)	130, 185, 203, 596, 896, 938, 950
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	311, 368
Hpy166II	GTNNAC	7 cut(s)	150, 333, 490, 532, 868, 913, 942
Hpy188I	TCNGA	6 cut(s)	120, 202, 391, 638, 987, 1023
Hpy188III	TCNNGA	8 cut(s)	77, 169, 241, 286, 311, 407, 560, 743
Hpy8I	GTNNAC	7 cut(s)	150, 333, 490, 532, 868, 913, 942
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	4 cut(s)	20, 704, 999, 1075
HpyCH4III	ACNGT	3 cut(s)	877, 976, 1058
HpyCH4IV	ACGT	2 cut(s)	100, 315
HpyCH4V	TGCA	3 cut(s)	150, 933, 1065
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 503, 711, 765, 1059, 1068
HpyF3I	CTNAG	6 cut(s)	111, 117, 144, 201, 258, 423
HpySE526I	ACGT	2 cut(s)	100, 315
Hsp92II	CATG	4 cut(s)	10, 488, 737, 802
Kzo9I	GATC	4 cut(s)	120, 175, 231, 1025
LguI	GCTCTTC	1 cut(s)	881
LmnI	GCTCC	2 cut(s)	267, 1047
Lsp1109I	GCAGC	2 cut(s)	1049, 1062
LweI	GCATC	4 cut(s)	584, 642, 714, 920
MaeI	CTAG	5 cut(s)	560, 765, 917, 956, 1001
MaeII	ACGT	2 cut(s)	100, 315
MaeIII	GTNAC	5 cut(s)	29, 49, 413, 665, 736
MalI	GATC	4 cut(s)	122, 177, 233, 1027
MboI	GATC	4 cut(s)	120, 175, 231, 1025
MboII	GAAGA	7 cut(s)	125, 211, 404, 492, 574, 898, 974
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	2 cut(s)	152, 684
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	851
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	6 cut(s)	179, 212, 605, 890, 947, 959
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	318, 434
MslI	CAYNNNNRTG	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	66, 357
MvaI	CCWGG	2 cut(s)	66, 357
MwoI	GCNNNNNNNGC	6 cut(s)	11, 503, 711, 765, 1059, 1068
NcoI	CCATGG	1 cut(s)	798
NdeII	GATC	4 cut(s)	120, 175, 231, 1025
NheI	GCTAGC	1 cut(s)	764
NlaIII	CATG	4 cut(s)	10, 488, 737, 802
NmuCI	GTSAC	2 cut(s)	413, 665
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	881
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	130
PflMI	CCANNNNNTGG	2 cut(s)	480, 749
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	42, 1052, 1064
PleI	GAGTC	6 cut(s)	179, 211, 604, 890, 946, 958
PpsI	GAGTC	6 cut(s)	179, 211, 604, 890, 946, 958
Ppu21I	YACGTR	1 cut(s)	101
PshAI	GACNNNNGTC	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	64, 355
PspGI	CCWGG	2 cut(s)	64, 355
PspPI	GGNCC	1 cut(s)	913
PsrI	GAACNNNNNNTAC	2 cut(s)	515, 547
PstNI	CAGNNNCTG	1 cut(s)	1062
PsuI	RGATCY	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	4 cut(s)	227, 253, 332, 828
RsaNI	GTAC	4 cut(s)	226, 252, 331, 827
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	881
SaqAI	TTAA	2 cut(s)	318, 434
SatI	GCNGC	3 cut(s)	41, 1051, 1063
Sau3AI	GATC	4 cut(s)	120, 175, 231, 1025
Sau96I	GGNCC	1 cut(s)	913
SchI	GAGTC	6 cut(s)	179, 212, 605, 890, 947, 959
ScrFI	CCNGG	2 cut(s)	66, 357
SduI	GDGCHC	2 cut(s)	152, 684
SfaNI	GCATC	4 cut(s)	584, 642, 714, 920
SfcI	CTRYAG	1 cut(s)	858
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	4 cut(s)	84, 286, 539, 805
SmoI	CTYRAG	4 cut(s)	84, 286, 539, 805
Sse9I	AATT	1 cut(s)	851
SsiI	CCGC	3 cut(s)	40, 249, 379
SspMI	CTAG	5 cut(s)	560, 765, 917, 956, 1001
StyD4I	CCNGG	2 cut(s)	64, 355
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	3 cut(s)	877, 976, 1058
TaiI	ACGT	2 cut(s)	103, 318
TaqI	TCGA	5 cut(s)	24, 123, 170, 708, 872
TasI	AATT	1 cut(s)	851
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	318, 434
Tru9I	TTAA	2 cut(s)	318, 434
TscAI	CASTG	3 cut(s)	445, 783, 981
TseFI	GTSAC	2 cut(s)	413, 665
TseI	GCWGC	2 cut(s)	1050, 1062
Tsp45I	GTSAC	2 cut(s)	413, 665
TspDTI	ATGAA	2 cut(s)	483, 713
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	3 cut(s)	445, 783, 981
Van91I	CCANNNNNTGG	2 cut(s)	480, 749
VneI	GTGCAC	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	913
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	5 cut(s)	560, 765, 917, 956, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.