RLG00000021429

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008254
Physical Location & Seq
Forward (+)
75342326 .. 75343441
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021429

Sequence Viewer

Length: 1116 bp
ATGGCTGTACCGGTGTCTGCAATCGGATTTGAAGGATATGAAAAGAGGCTCGAGGTCTGTTTCTTCGAGCCAGGACTGTTTGCTGACCCTAATGGCATGGGTCTCCGCACTTTGTCAAAAGCTCAAATTGATGAGATTCTGAAACCAGCTGAATGCACCATTGTTTCATCACTGTCGAATGATGATCTGGACTCGTATGTCCTTTCGGAATCCAGCCTCTTTGTGTACCCATACAAAGTTATCATCAAAACTTGCGGGACAACGAAATTACTTCGCTCAATTCCTGCCATTCTTAAGTTGGCAGAGACTCTCTCACTCGCCGTGAGATCTGTGAGGTACTCTCGTGGAAGCTTCATATTTCCTGGTGCTCAGCCCTCCCCACATCGTAGCTTCTCAGAGGAAGTATCTGTCCTTGATGGCCATTTTGGCAAGCTTGGTTTGGCAAGCAGAGCCTATGTTATGGGTAGCCCTGACAATGCTCAGAAATGGCATGTTTACTCTGCCTCGGCCGAGTTGGCAAGTCTATTCTGGGGAGCACGCCCCTCAGGCCCCATCTACACTCTTGAGATGTGCATGACTGGCTTGGACAGGAAGAAGGCATCTGTGTTTTACAAGACAAATGCAAGTTCAGCTGCTATTATGACTGAAGATTCTGGCATCAGGAAGATTCTCCCAAAGTCTGAAATATGTGACTTTGAGTTTGATCCTTGCGGCTACTCTATGAACTCCATCGAAGGGGATGCAATTTCTACCATTCATGTGACACCTGAAGACGGTTTCAGCTATGCTAGCTTTGAAACAGTGGGCTACAACTTCAAGGATGTGAACTTGACCCATCTGATCAAGAGGGTTCTGGATTGCTTCAAACCAGCTGAGTTCTCTGTGTCTCTGCATTCCACCATTGCTGCAAGTGAAGAACTTGAGTTCCCTCTGGAATTGAGCGGATACTGTTGCGGATCAACAAACTATGAAGAACTGGGTCTAGGTGGTGCAGTCATCTACCACAGCTTTGCCAAGGACGAAGGTTCTCAGTCTCCAAGGTCAATTCTAAAATGCTGCTGGAGCGAGGACGAGAAGGACGAGGAAGTTGAAGAGAGAGTTCTGGACAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

372

Amino Acids

40.81

Weight (kDa)

4.96

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 9 - 337 1.8e-116 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 942
AciI CCGC 5 cut(s) 106, 255, 711, 942, 954
AclWI GGATC 2 cut(s) 698, 964
AcoI YGGCCR 2 cut(s) 418, 507
AcuI CTGAAG 2 cut(s) 666, 789
AfaI GTAC 3 cut(s) 9, 227, 338
AfiI CCNNNNNNNGG 2 cut(s) 735, 773
AflII CTTAAG 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 5 cut(s) 32, 797, 817, 865, 1091
AjnI CCWGG 2 cut(s) 70, 361
AloI GAACNNNNNNTCC 2 cut(s) 909, 941
Alw21I GWGCWC 2 cut(s) 370, 538
Alw26I GTCTC 4 cut(s) 107, 299, 891, 1038
AlwI GGATC 2 cut(s) 698, 964
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 3 cut(s) 418, 507, 547
ApeKI GCWGC 3 cut(s) 632, 905, 1056
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AsiGI ACCGGT 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 548
AsuNHI GCTAGC 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 420
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 2 cut(s) 370, 538
BbvI GCAGC 3 cut(s) 619, 892, 1043
BccI CCATC 4 cut(s) 410, 560, 737, 843
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 2 cut(s) 72, 363
BciVI GTATCC 1 cut(s) 938
BclI TGATCA 1 cut(s) 840
BcoDI GTCTC 4 cut(s) 107, 299, 891, 1038
BfaI CTAG 3 cut(s) 789, 983, 1114
BfrI CTTAAG 1 cut(s) 293
BfuI GTATCC 1 cut(s) 938
BglI GCCNNNNNGGC 3 cut(s) 426, 515, 546
BglII AGATCT 1 cut(s) 326
BisI GCNGC 4 cut(s) 633, 712, 906, 1057
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 4 cut(s) 634, 713, 907, 1058
Bme1390I CCNGG 2 cut(s) 72, 363
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 2 cut(s) 72, 363
BmrI ACTGGG 1 cut(s) 986
BmsI GCATC 3 cut(s) 608, 666, 730
BmtI GCTAGC 1 cut(s) 792
BmuI ACTGGG 1 cut(s) 986
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 325, 357
BpmI CTGGAG 1 cut(s) 1081
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 584, 941
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 504, 1014, 1037
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 735, 773
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 583, 981
Bse21I CCTNAGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 2 cut(s) 72, 363
BseDI CCNNGG 3 cut(s) 504, 1014, 1037
BseGI GGATG 2 cut(s) 745, 826
BseLI CCNNNNNNNGG 2 cut(s) 735, 773
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 6 cut(s) 383, 408, 494, 558, 864, 1043
BseNI ACTGG 2 cut(s) 583, 981
BseX3I CGGCCG 1 cut(s) 507
BseXI GCAGC 3 cut(s) 619, 892, 1043
BsgI GTGCAG 1 cut(s) 1011
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 3 cut(s) 420, 509, 549
BshTI ACCGGT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 510
BsiHKAI GWGCWC 2 cut(s) 370, 538
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 735, 773
BsmAI GTCTC 4 cut(s) 107, 299, 891, 1038
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 2 cut(s) 158, 892
BsnI GGCC 3 cut(s) 420, 509, 549
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 370, 538
Bsp143I GATC 5 cut(s) 184, 326, 703, 840, 956
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 5 cut(s) 106, 255, 711, 942, 954
BspANI GGCC 3 cut(s) 420, 509, 549
BspCNI CTCAG 6 cut(s) 382, 407, 493, 557, 865, 1042
BspLI GGNNCC 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 792
BspPI GGATC 2 cut(s) 698, 964
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 942
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 2 cut(s) 583, 981
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 3 cut(s) 504, 1014, 1037
BssMI GATC 5 cut(s) 184, 326, 703, 840, 956
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 1014, 1037
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 72, 363
Bst4CI ACNGT 5 cut(s) 78, 174, 776, 802, 950
Bst6I CTCTTC 1 cut(s) 1086
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 4 cut(s) 431, 445, 538, 790
BstDEI CTNAG 6 cut(s) 369, 394, 480, 544, 873, 1029
BstF5I GGATG 2 cut(s) 745, 826
BstKTI GATC 5 cut(s) 187, 329, 706, 843, 959
BstMAI GTCTC 4 cut(s) 107, 299, 891, 1038
BstMBI GATC 5 cut(s) 184, 326, 703, 840, 956
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 8 cut(s) 426, 449, 515, 546, 579, 629, 789, 1062
BstNI CCWGG 2 cut(s) 72, 363
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 70, 361
BstV1I GCAGC 3 cut(s) 619, 892, 1043
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BstZI CGGCCG 1 cut(s) 507
Bsu36I CCTNAGG 1 cut(s) 544
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 3 cut(s) 420, 509, 549
BtsCI GGATG 2 cut(s) 745, 826
BtsIMutI CAGTG 2 cut(s) 170, 807
Cac8I GCNNGC 4 cut(s) 431, 445, 538, 790
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 8, 226, 337
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 4 cut(s) 97, 491, 574, 758
CviQI GTAC 3 cut(s) 8, 226, 337
DdeI CTNAG 6 cut(s) 369, 394, 480, 544, 873, 1029
DpnI GATC 5 cut(s) 186, 328, 705, 842, 958
DpnII GATC 5 cut(s) 184, 326, 703, 840, 956
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 2 cut(s) 418, 507
EagI CGGCCG 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
EclXI CGGCCG 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 1014, 1037
Eco31I GGTCTC 1 cut(s) 107
Eco52I CGGCCG 1 cut(s) 507
Eco57I CTGAAG 2 cut(s) 666, 789
Eco81I CCTNAGG 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 70, 361
EcoT14I CCWWGG 2 cut(s) 1014, 1037
ErhI CCWWGG 2 cut(s) 1014, 1037
FaeI CATG 4 cut(s) 100, 494, 577, 761
FaqI GGGAC 1 cut(s) 271
FatI CATG 4 cut(s) 96, 490, 573, 757
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 633, 712, 906, 1057
FokI GGATG 2 cut(s) 752, 833
Fsp4HI GCNGC 4 cut(s) 633, 712, 906, 1057
FspBI CTAG 3 cut(s) 789, 983, 1114
GluI GCNGC 4 cut(s) 633, 712, 906, 1057
GsuI CTGGAG 1 cut(s) 1081
HaeIII GGCC 3 cut(s) 420, 509, 549
HapII CCGG 1 cut(s) 11
Hin1II CATG 4 cut(s) 100, 494, 577, 761
HindIII AAGCTT 2 cut(s) 349, 431
HinfI GANTC 6 cut(s) 136, 191, 209, 307, 650, 667
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 3 cut(s) 226, 496, 826
Hpy188I TCNGA 7 cut(s) 26, 141, 208, 397, 483, 682, 840
Hpy188III TCNNGA 7 cut(s) 188, 563, 661, 844, 854, 932, 1103
Hpy8I GTNNAC 3 cut(s) 226, 496, 826
HpyAV CCTTC 5 cut(s) 26, 589, 728, 1016, 1069
HpyCH4III ACNGT 5 cut(s) 78, 174, 776, 802, 950
HpyCH4V TGCA 8 cut(s) 20, 156, 573, 623, 743, 892, 908, 992
HpyF10VI GCNNNNNNNGC 8 cut(s) 426, 449, 515, 546, 579, 629, 789, 1062
HpyF3I CTNAG 6 cut(s) 369, 394, 480, 544, 873, 1029
Hsp92II CATG 4 cut(s) 100, 494, 577, 761
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 5 cut(s) 184, 326, 703, 840, 956
LmnI GCTCC 2 cut(s) 533, 1062
Lsp1109I GCAGC 3 cut(s) 619, 892, 1043
LweI GCATC 3 cut(s) 608, 666, 730
MaeI CTAG 3 cut(s) 789, 983, 1114
MaeIII GTNAC 2 cut(s) 689, 760
MalI GATC 5 cut(s) 186, 328, 705, 842, 958
MbiI CCGCTC 1 cut(s) 942
MboI GATC 5 cut(s) 184, 326, 703, 840, 956
MboII GAAGA 8 cut(s) 55, 604, 659, 676, 782, 926, 983, 1103
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 370, 538
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 6 cut(s) 126, 266, 279, 744, 935, 1044
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 185, 301
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 758
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 3 cut(s) 149, 632, 872
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 72, 363
Mva1269I GAATGC 2 cut(s) 158, 892
MvaI CCWGG 2 cut(s) 72, 363
MwoI GCNNNNNNNGC 8 cut(s) 426, 449, 515, 546, 579, 629, 789, 1062
NdeII GATC 5 cut(s) 184, 326, 703, 840, 956
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 4 cut(s) 100, 494, 577, 761
NlaIV GGNNCC 1 cut(s) 550
NmeAIII GCCGAG 2 cut(s) 485, 535
NmuCI GTSAC 2 cut(s) 689, 760
NspI RCATGY 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PctI GAATGC 2 cut(s) 158, 892
PfeI GAWTC 4 cut(s) 136, 209, 650, 667
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 4 cut(s) 634, 713, 907, 1058
PleI GAGTC 2 cut(s) 185, 301
PpsI GAGTC 2 cut(s) 185, 301
Psp6I CCWGG 2 cut(s) 70, 361
PspGI CCWGG 2 cut(s) 70, 361
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 50
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 3 cut(s) 149, 632, 872
RsaI GTAC 3 cut(s) 9, 227, 338
RsaNI GTAC 3 cut(s) 8, 226, 337
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 633, 712, 906, 1057
Sau3AI GATC 5 cut(s) 184, 326, 703, 840, 956
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 2 cut(s) 185, 301
ScrFI CCNGG 2 cut(s) 72, 363
SduI GDGCHC 2 cut(s) 370, 538
SfaNI GCATC 3 cut(s) 608, 666, 730
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 4 cut(s) 50, 293, 563, 920
SmoI CTYRAG 4 cut(s) 50, 293, 563, 920
Sse9I AATT 6 cut(s) 126, 266, 279, 744, 935, 1044
SsiI CCGC 5 cut(s) 106, 255, 711, 942, 954
SspMI CTAG 3 cut(s) 789, 983, 1114
StyD4I CCNGG 2 cut(s) 70, 361
StyI CCWWGG 2 cut(s) 1014, 1037
TaaI ACNGT 5 cut(s) 78, 174, 776, 802, 950
TaqI TCGA 4 cut(s) 51, 66, 176, 732
TasI AATT 6 cut(s) 126, 266, 279, 744, 935, 1044
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 4 cut(s) 136, 209, 650, 667
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 177, 807
TseFI GTSAC 2 cut(s) 689, 760
TseI GCWGC 3 cut(s) 632, 905, 1056
Tsp45I GTSAC 2 cut(s) 689, 760
TspDTI ATGAA 6 cut(s) 54, 156, 343, 737, 746, 984
TspRI CASTG 2 cut(s) 177, 807
Vha464I CTTAAG 1 cut(s) 293
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 3 cut(s) 789, 983, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.