MD09G1079800.v1.1

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0008254
Physical Location & Seq
Reverse (-)
5601960 .. 5603351
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1079800.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGGCTGTACCGGTCTCTGCAATTGGATTTGAAGGGTATGAAAAGAGGCTCGAGGTCTCTTTCTTCGAGCCTGGACTGTTTGCTGACCCTAAAGGCATGGGTCTTCGTTCTCTATCGAAAGCTCAAATAGATGAGATTCTGACACCAGCTGAGTGCACCATTGTTTCTTCACTGTCGAATGATGATCTTGACTCTTATGTCCTATCCGAGTCGAGCCTCTTTGTGTACCCTTACAAAGTGATCATCAAAACCTGTGGCACAACGAAATTGCTTCGATCAATCCCTGCCATCCTCAAGCTTGCCGACTCCCTCTCTCTAGCTGTAAAATCTGTGAGGTACTCTCGTGGGAGCTTTATCTTTCCTGGTGCTCAGCCCTCTCCGCATCGTAGCTTTTCGGAGGAGGTAGCTGTACTTGACGGCCATTTTGGCAAGCTTGGTTTGGCAAGCAAGGCATATGTTATGGGAAGCCCTGACAAAACTCAGAAATGGCATATTTACTCTGCATCGGCGGAGTTGGCAAGCTTATTTTGGGGTTCACGCCAATCAGGCCCTACATACACTCTGGAGATGTGCATGACTGGTTTAGACAGGAAGAGGGCTTCTGTCTTTTACAAATCCGACGCAAGTTCAGCTGCTGGTATGACCGTAGAATCCGGCATCAGGAACATCCTCCCGCAGTCCGATATATGTGACTTTGAGTTCGAGCCGTGCGGTTACTCCATGAACTCAATCGAAGGGAATGCAGTTTCTACCATCCATGTGACACCAGAAGACGGTTTCAGCTACGCTAGCTTTGAAACAGTGGGCTATGATTTCAAAGATGTGAACTTGACCCAACTGCTGTACAGGGTTCTGGATTGCTTCAAACCAGCTGAGTTCTCCATAGCCTTGCACACCACGAGCACCGCAGGCGAAGATCTTGACGCTAAGTGCCCTCTGGACTTGAAGGGATACTGCTGCGGAGGAAGCAGCTACGAGGGTTTGGGGCTGGGTGGCGCGGTCACGTACCGCAGCTTTGTCAAGGACGACAGCGGTTCTCAGTCTCCAAGGTCGATTCTGAAGTGCTGCTGGAGCGAGGACGAGAAGGACGAGGAAGTTGAAGAAATAGGTCTGGCAAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

375

Amino Acids

40.67

Weight (kDa)

4.92

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 9 - 339 2.3e-115 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccII CGCG 1 cut(s) 998
AciI CCGC 9 cut(s) 380, 509, 674, 711, 906, 960, 998, 1009, 1032
AcoI YGGCCR 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 1079
AfaI GTAC 6 cut(s) 9, 227, 338, 411, 845, 1007
AfiI CCNNNNNNNGG 2 cut(s) 660, 773
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 6 cut(s) 32, 797, 817, 865, 946, 1100
AjnI CCWGG 2 cut(s) 70, 361
Alw21I GWGCWC 3 cut(s) 158, 370, 905
Alw26I GTCTC 3 cut(s) 19, 61, 1047
Alw44I GTGCAC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 2 cut(s) 418, 547
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 5 cut(s) 632, 957, 969, 1011, 1065
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 683, 715
AsiGI ACCGGT 1 cut(s) 10
AspLEI GCGC 1 cut(s) 998
AspS9I GGNCC 1 cut(s) 548
AsuNHI GCTAGC 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 50
BaeGI GKGCMC 2 cut(s) 158, 935
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BauI CACGAG 2 cut(s) 342, 898
BbsI GAAGAC 2 cut(s) 95, 777
Bbv12I GWGCWC 3 cut(s) 158, 370, 905
BbvI GCAGC 5 cut(s) 619, 944, 981, 1023, 1052
BccI CCATC 2 cut(s) 296, 761
BceAI ACGGC 2 cut(s) 433, 691
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 2 cut(s) 72, 363
BciVI GTATCC 1 cut(s) 944
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 3 cut(s) 19, 61, 1047
BfaI CTAG 3 cut(s) 317, 789, 1123
BfuI GTATCC 1 cut(s) 944
BglI GCCNNNNNGGC 2 cut(s) 426, 546
BglII AGATCT 2 cut(s) 916, 1119
BisI GCNGC 5 cut(s) 633, 958, 970, 1012, 1066
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 5 cut(s) 634, 959, 971, 1013, 1067
Bme1390I CCNGG 2 cut(s) 72, 363
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 548
BmrFI CCNGG 2 cut(s) 72, 363
BmsI GCATC 3 cut(s) 391, 512, 666
BmtI GCTAGC 1 cut(s) 792
BpiI GAAGAC 2 cut(s) 95, 777
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 2 cut(s) 584, 1090
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 1005
BsaI GGTCTC 2 cut(s) 19, 61
BsaJI CCNNGG 1 cut(s) 1046
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 660, 773
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 583
BseBI CCWGG 2 cut(s) 72, 363
BseDI CCNNGG 1 cut(s) 1046
BseGI GGATG 3 cut(s) 288, 666, 753
BseLI CCNNNNNNNGG 2 cut(s) 660, 773
BseMII CTCAG 5 cut(s) 141, 383, 494, 864, 1052
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 2 cut(s) 158, 935
BseXI GCAGC 5 cut(s) 619, 944, 981, 1023, 1052
BseYI CCCAGC 1 cut(s) 988
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 2 cut(s) 420, 549
BshTI ACCGGT 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 158, 370, 905
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 11, 654
BslI CCNNNNNNNGG 2 cut(s) 660, 773
BsmAI GTCTC 3 cut(s) 19, 61, 1047
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 2 cut(s) 420, 549
Bso31I GGTCTC 2 cut(s) 19, 61
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 4 cut(s) 158, 370, 905, 935
Bsp1407I TGTACA 1 cut(s) 843
Bsp143I GATC 5 cut(s) 184, 240, 275, 916, 1119
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 9 cut(s) 380, 509, 674, 711, 906, 960, 998, 1009, 1032
BspANI GGCC 2 cut(s) 420, 549
BspCNI CTCAG 5 cut(s) 142, 382, 493, 865, 1051
BspFNI CGCG 1 cut(s) 998
BspOI GCTAGC 1 cut(s) 792
BspTNI GGTCTC 2 cut(s) 19, 61
BsrFI RCCGGY 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 843
BsrI ACTGG 1 cut(s) 583
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 1046
BssMI GATC 5 cut(s) 184, 240, 275, 916, 1119
BssSI CACGAG 2 cut(s) 342, 898
BssT1I CCWWGG 1 cut(s) 1046
Bst2BI CACGAG 2 cut(s) 342, 898
Bst2UI CCWGG 2 cut(s) 72, 363
Bst4CI ACNGT 5 cut(s) 78, 174, 646, 776, 802
Bst6I CTCTTC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 843
BstBAI YACGTR 1 cut(s) 1005
BstC8I GCNNGC 6 cut(s) 300, 431, 445, 520, 790, 910
BstDEI CTNAG 6 cut(s) 150, 369, 480, 873, 927, 1038
BstF5I GGATG 3 cut(s) 288, 666, 753
BstFNI CGCG 1 cut(s) 998
BstHHI GCGC 1 cut(s) 998
BstKTI GATC 5 cut(s) 187, 243, 278, 919, 1122
BstMAI GTCTC 3 cut(s) 19, 61, 1047
BstMBI GATC 5 cut(s) 184, 240, 275, 916, 1119
BstNI CCWGG 2 cut(s) 72, 363
BstSCI CCNGG 2 cut(s) 70, 361
BstSLI GKGCMC 2 cut(s) 158, 935
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 5 cut(s) 619, 944, 981, 1023, 1052
BstV2I GAAGAC 2 cut(s) 95, 777
BstX2I RGATCY 2 cut(s) 916, 1119
BstYI RGATCY 2 cut(s) 916, 1119
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 2 cut(s) 420, 549
BtsCI GGATG 3 cut(s) 288, 666, 753
BtsIMutI CAGTG 2 cut(s) 170, 807
Cac8I GCNNGC 6 cut(s) 300, 431, 445, 520, 790, 910
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 998
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 548
CseI GACGC 2 cut(s) 629, 932
Csp6I GTAC 6 cut(s) 8, 226, 337, 410, 844, 1006
CspAI ACCGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 4 cut(s) 97, 574, 721, 758
CviQI GTAC 6 cut(s) 8, 226, 337, 410, 844, 1006
DdeI CTNAG 6 cut(s) 150, 369, 480, 873, 927, 1038
DpnI GATC 5 cut(s) 186, 242, 277, 918, 1121
DpnII GATC 5 cut(s) 184, 240, 275, 916, 1119
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
EciI GGCGGA 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 1046
Eco31I GGTCTC 2 cut(s) 19, 61
Eco57I CTGAAG 1 cut(s) 1079
Eco88I CYCGRG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 70, 361
EcoT14I CCWWGG 1 cut(s) 1046
ErhI CCWWGG 1 cut(s) 1046
FaeI CATG 4 cut(s) 100, 577, 724, 761
FatI CATG 4 cut(s) 96, 573, 720, 757
FauI CCCGC 1 cut(s) 681
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 633, 958, 970, 1012, 1066
FokI GGATG 3 cut(s) 275, 653, 740
Fsp4HI GCNGC 5 cut(s) 633, 958, 970, 1012, 1066
FspBI CTAG 3 cut(s) 317, 789, 1123
GlaI GCGC 1 cut(s) 997
GluI GCNGC 5 cut(s) 633, 958, 970, 1012, 1066
GsaI CCCAGC 1 cut(s) 992
GsuI CTGGAG 2 cut(s) 584, 1090
HaeIII GGCC 2 cut(s) 420, 549
HapII CCGG 2 cut(s) 11, 654
HgaI GACGC 2 cut(s) 629, 932
HhaI GCGC 1 cut(s) 998
Hin1II CATG 4 cut(s) 100, 577, 724, 761
Hin6I GCGC 1 cut(s) 996
HinP1I GCGC 1 cut(s) 996
HindIII AAGCTT 3 cut(s) 296, 431, 520
HinfI GANTC 6 cut(s) 136, 191, 209, 305, 650, 1054
HpaII CCGG 2 cut(s) 11, 654
Hpy166II GTNNAC 4 cut(s) 156, 226, 536, 826
Hpy188I TCNGA 7 cut(s) 141, 208, 397, 483, 619, 682, 1059
Hpy188III TCNNGA 6 cut(s) 188, 563, 661, 854, 920, 938
Hpy8I GTNNAC 4 cut(s) 156, 226, 536, 826
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 4 cut(s) 26, 728, 940, 1078
HpyCH4III ACNGT 5 cut(s) 78, 174, 646, 776, 802
HpyCH4IV ACGT 1 cut(s) 1004
HpyCH4V TGCA 6 cut(s) 20, 156, 503, 573, 743, 892
HpyF3I CTNAG 6 cut(s) 150, 369, 480, 873, 927, 1038
HpySE526I ACGT 1 cut(s) 1004
Hsp92II CATG 4 cut(s) 100, 577, 724, 761
HspAI GCGC 1 cut(s) 996
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 5 cut(s) 184, 240, 275, 916, 1119
LmnI GCTCC 2 cut(s) 348, 1071
Lsp1109I GCAGC 5 cut(s) 619, 944, 981, 1023, 1052
LweI GCATC 3 cut(s) 391, 512, 666
MaeI CTAG 3 cut(s) 317, 789, 1123
MaeII ACGT 1 cut(s) 1004
MaeIII GTNAC 4 cut(s) 689, 713, 760, 1000
MalI GATC 5 cut(s) 186, 242, 277, 918, 1121
MboI GATC 5 cut(s) 184, 240, 275, 916, 1119
MboII GAAGA 7 cut(s) 55, 95, 159, 604, 782, 926, 1112
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 2 cut(s) 916, 1119
MhlI GDGCHC 4 cut(s) 158, 370, 905, 935
MluCI AATT 2 cut(s) 21, 266
MlyI GAGTC 3 cut(s) 185, 218, 299
MmeI TCCRAC 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 4 cut(s) 149, 632, 872, 1032
MspI CCGG 2 cut(s) 11, 654
MspR9I CCNGG 2 cut(s) 72, 363
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 2 cut(s) 72, 363
MvnI CGCG 1 cut(s) 998
NdeI CATATG 1 cut(s) 454
NdeII GATC 5 cut(s) 184, 240, 275, 916, 1119
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 4 cut(s) 100, 577, 724, 761
NmuCI GTSAC 3 cut(s) 689, 760, 1000
PaeR7I CTCGAG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 3 cut(s) 136, 650, 1054
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 5 cut(s) 634, 959, 971, 1013, 1067
PleI GAGTC 3 cut(s) 185, 217, 299
PpsI GAGTC 3 cut(s) 185, 217, 299
Ppu21I YACGTR 1 cut(s) 1005
Psp6I CCWGG 2 cut(s) 70, 361
PspFI CCCAGC 1 cut(s) 988
PspGI CCWGG 2 cut(s) 70, 361
PspPI GGNCC 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 916, 1119
PvuII CAGCTG 3 cut(s) 149, 632, 872
RsaI GTAC 6 cut(s) 9, 227, 338, 411, 845, 1007
RsaNI GTAC 6 cut(s) 8, 226, 337, 410, 844, 1006
RseI CAYNNNNRTG 1 cut(s) 758
SatI GCNGC 5 cut(s) 633, 958, 970, 1012, 1066
Sau3AI GATC 5 cut(s) 184, 240, 275, 916, 1119
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 3 cut(s) 185, 218, 299
ScrFI CCNGG 2 cut(s) 72, 363
SduI GDGCHC 4 cut(s) 158, 370, 905, 935
SfaNI GCATC 3 cut(s) 391, 512, 666
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 50, 293
SmoI CTYRAG 2 cut(s) 50, 293
Sse9I AATT 2 cut(s) 21, 266
SsiI CCGC 9 cut(s) 380, 509, 674, 711, 906, 960, 998, 1009, 1032
SspMI CTAG 3 cut(s) 317, 789, 1123
StyD4I CCNGG 2 cut(s) 70, 361
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 5 cut(s) 78, 174, 646, 776, 802
TaiI ACGT 1 cut(s) 1007
TaqI TCGA 9 cut(s) 51, 66, 116, 176, 212, 274, 702, 732, 1052
TasI AATT 2 cut(s) 21, 266
TatI WGTACW 2 cut(s) 409, 843
TfiI GAWTC 3 cut(s) 136, 650, 1054
TscAI CASTG 2 cut(s) 177, 807
TseFI GTSAC 3 cut(s) 689, 760, 1000
TseI GCWGC 5 cut(s) 632, 957, 969, 1011, 1065
Tsp45I GTSAC 3 cut(s) 689, 760, 1000
TspDTI ATGAA 2 cut(s) 54, 737
TspRI CASTG 2 cut(s) 177, 807
VneI GTGCAC 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 3 cut(s) 317, 789, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.