FvH4_6g45760

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008254
Physical Location & Seq
Forward (+)
35045978 .. 35048548
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45760.t1

Sequence Viewer

Length: 1116 bp
ATGGCTGTACCGGTTTCTGCAATTGGATTCGAAGGATATGAAAAGAGGCTCGAGGTCTGTTTCTTCGAGCCCGGACTGTTTGCTGACCCTAAAGGCATGGGCCTCCGCTCATTGTCAAGAGCTCAAATCAACGAGATTCTGAACCCAGCTGAGTGCACCATTGTTTCATCCCTGTTGAATGATGATCTGGACTCGTATGTCCTTTCGGAATCTAGCCTTTTTGTGTACCCATACAAGGTTATCATTAAAACTTGTGGGACAACAAAATTGCTTCGCTCAATTCCTGCCATTCTTAAGTTGGCCGAGACCCTCTCACTCGCTGTGAGATCTGTGAGGTACTCTCGTGGGAGCTTCATATTTCCTGGTGCTCAGCCTTCCCCGCATCGTAGCTTCTCAGAGGAAGTAGCTGTCCTTGATGGCCATTTCAGCAAGCTTGGGTTGGCAAGCAGAGCCTACATTATGGGTAGCCCTGACAATTCTCAGAAATGGCATGTTTACTCTGCCTCAGCTGAATTGGCTAGTTTATTCTGGGGAACACGCTCCTCAGGCCCTACCTACACTCTTGAGATGTGCATGACTGGCTTGGATAGGAAGAAGGCATCTGTGTTTTACAAGACAAATGCTAGTTCAGCTGCCATAATGACTGAAGATTCTGGCATCAGGAAAATTCTCCCGAAATCTGAAATATGCGATTTTGAGTTTGATCCTTGCGGCTACTCTATGAACTCTATTGAAGGGGATGCAGTTTCTACCATTCATGTGACACCTGAGGATGGTTTCAGCTACGCTAGCTTTGAAACAGTGGGCTACAACTTCAAGGATGTCAACTTGACTCGTCTCATTGAGAGGGTTCTGGACTGTTTCAAACCAGCTGAGTTCTCTGTGTCTCTGCATTCCACCATTGCTGCCAGTGAAGAACTTGAGTTCCCTCTGGAATTGAGCGGATATTGTTGCGGATCAACAAGCTATGAAGAGCTGGGTCTAGGAGGTGCAGTCATCTATCACAGCTTTAACAAGGACGGAGGTTCTCAATCTCCAAGGTCAATTCTGAAATGCTGCTGGAGCGAGGACGAGAAGGACGAGGAAGTTGAAGAGAGTTTGAGCATGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

372

Amino Acids

40.78

Weight (kDa)

4.96

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 9 - 337 9.4e-117 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccBSI CCGCTC 2 cut(s) 108, 942
AciI CCGC 5 cut(s) 106, 380, 711, 942, 954
AclWI GGATC 2 cut(s) 698, 964
AcoI YGGCCR 2 cut(s) 300, 418
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 3 cut(s) 9, 227, 338
AfiI CCNNNNNNNGG 2 cut(s) 235, 773
AflII CTTAAG 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 6 cut(s) 178, 734, 797, 817, 865, 1091
AjnI CCWGG 1 cut(s) 361
AloI GAACNNNNNNTCC 2 cut(s) 909, 941
Alw21I GWGCWC 3 cut(s) 124, 158, 370
Alw26I GTCTC 3 cut(s) 299, 842, 891
Alw44I GTGCAC 1 cut(s) 154
AlwI GGATC 2 cut(s) 698, 964
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 4 cut(s) 100, 300, 418, 547
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 632, 905, 1056
ApoI RAATTY 1 cut(s) 666
AsiGI ACCGGT 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 100, 548
AsuC2I CCSGG 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 30
AsuNHI GCTAGC 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 50
AxyI CCTNAGG 2 cut(s) 544, 768
BaeGI GKGCMC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 420
BanII GRGCYC 2 cut(s) 72, 124
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 3 cut(s) 124, 158, 370
BbvCI CCTCAGC 1 cut(s) 505
BbvI GCAGC 3 cut(s) 619, 892, 1043
BccI CCATC 2 cut(s) 410, 767
BciT130I CCWGG 1 cut(s) 363
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 3 cut(s) 299, 842, 891
BfaI CTAG 6 cut(s) 213, 519, 624, 789, 983, 1114
BfrI CTTAAG 1 cut(s) 293
BglII AGATCT 1 cut(s) 326
BisI GCNGC 4 cut(s) 633, 712, 906, 1057
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 4 cut(s) 634, 713, 907, 1058
Bme1390I CCNGG 2 cut(s) 72, 363
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 100, 548
BmrFI CCNGG 2 cut(s) 72, 363
BmsI GCATC 4 cut(s) 391, 608, 666, 730
BmtI GCTAGC 1 cut(s) 792
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 325, 357
BpmI CTGGAG 1 cut(s) 1081
Bpu10I CCTNAGC 1 cut(s) 505
Bpu1102I GCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 584, 941
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 1037
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 773
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 583, 909
Bse21I CCTNAGG 2 cut(s) 544, 768
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 1037
BseGI GGATG 4 cut(s) 167, 745, 778, 826
BseLI CCNNNNNNNGG 2 cut(s) 235, 773
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 8 cut(s) 141, 383, 408, 494, 519, 558, 759, 864
BseNI ACTGG 2 cut(s) 583, 909
BseRI GAGGAG 1 cut(s) 532
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 3 cut(s) 619, 892, 1043
BseYI CCCAGC 2 cut(s) 145, 976
BsgI GTGCAG 1 cut(s) 1011
BshFI GGCC 4 cut(s) 102, 302, 420, 549
BshTI ACCGGT 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 124, 158, 370
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 11, 72
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 235, 773
BsmAI GTCTC 3 cut(s) 299, 842, 891
BsmBI CGTCTC 1 cut(s) 842
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 4 cut(s) 102, 302, 420, 549
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 4 cut(s) 72, 124, 158, 370
Bsp143I GATC 4 cut(s) 184, 326, 703, 956
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 5 cut(s) 106, 380, 711, 942, 954
BspANI GGCC 4 cut(s) 102, 302, 420, 549
BspCNI CTCAG 8 cut(s) 142, 382, 407, 493, 518, 557, 760, 865
BspOI GCTAGC 1 cut(s) 792
BspPI GGATC 2 cut(s) 698, 964
BspQI GCTCTTC 1 cut(s) 966
BspT104I TTCGAA 1 cut(s) 30
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 299
BsrBI CCGCTC 2 cut(s) 108, 942
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 2 cut(s) 583, 909
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 1037
BssMI GATC 4 cut(s) 184, 326, 703, 956
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 1037
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 78, 802, 860
Bst6I CTCTTC 2 cut(s) 966, 1086
BstAFI CTTAAG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 431, 445, 790
BstDEI CTNAG 8 cut(s) 150, 369, 394, 480, 505, 544, 768, 873
BstF5I GGATG 4 cut(s) 167, 745, 778, 826
BstKTI GATC 4 cut(s) 187, 329, 706, 959
BstMAI GTCTC 3 cut(s) 299, 842, 891
BstMBI GATC 4 cut(s) 184, 326, 703, 956
BstMWI GCNNNNNNNGC 9 cut(s) 379, 426, 449, 515, 546, 579, 629, 789, 1062
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 70, 361
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 619, 892, 1043
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu36I CCTNAGG 2 cut(s) 544, 768
BsuRI GGCC 4 cut(s) 102, 302, 420, 549
BtsCI GGATG 4 cut(s) 167, 745, 778, 826
BtsIMutI CAGTG 2 cut(s) 807, 916
Cac8I GCNNGC 3 cut(s) 431, 445, 790
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 100, 548
Csp6I GTAC 3 cut(s) 8, 226, 337
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 5 cut(s) 97, 491, 574, 758, 1105
CviQI GTAC 3 cut(s) 8, 226, 337
DdeI CTNAG 8 cut(s) 150, 369, 394, 480, 505, 544, 768, 873
DpnI GATC 4 cut(s) 186, 328, 705, 958
DpnII GATC 4 cut(s) 184, 326, 703, 956
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 2 cut(s) 300, 418
Eam1104I CTCTTC 2 cut(s) 966, 1086
EarI CTCTTC 2 cut(s) 966, 1086
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 1037
Eco24I GRGCYC 2 cut(s) 72, 124
Eco31I GGTCTC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 666
Eco81I CCTNAGG 2 cut(s) 544, 768
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 1037
EcoT38I GRGCYC 2 cut(s) 72, 124
ErhI CCWWGG 1 cut(s) 1037
Esp3I CGTCTC 1 cut(s) 842
FaeI CATG 5 cut(s) 100, 494, 577, 761, 1108
FaqI GGGAC 1 cut(s) 271
FatI CATG 5 cut(s) 96, 490, 573, 757, 1104
FauI CCCGC 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 633, 712, 906, 1057
FokI GGATG 4 cut(s) 154, 752, 785, 833
FriOI GRGCYC 2 cut(s) 72, 124
Fsp4HI GCNGC 4 cut(s) 633, 712, 906, 1057
FspBI CTAG 6 cut(s) 213, 519, 624, 789, 983, 1114
GluI GCNGC 4 cut(s) 633, 712, 906, 1057
GsaI CCCAGC 2 cut(s) 149, 980
GsuI CTGGAG 1 cut(s) 1081
HaeIII GGCC 4 cut(s) 102, 302, 420, 549
HapII CCGG 2 cut(s) 11, 72
Hin1II CATG 5 cut(s) 100, 494, 577, 761, 1108
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 6 cut(s) 27, 136, 191, 209, 650, 832
HpaII CCGG 2 cut(s) 11, 72
Hpy166II GTNNAC 4 cut(s) 156, 226, 496, 826
Hpy188I TCNGA 6 cut(s) 141, 208, 397, 483, 682, 1050
Hpy188III TCNNGA 7 cut(s) 117, 188, 563, 661, 673, 854, 932
Hpy8I GTNNAC 4 cut(s) 156, 226, 496, 826
HpyAV CCTTC 5 cut(s) 26, 384, 589, 728, 1069
HpyCH4III ACNGT 3 cut(s) 78, 802, 860
HpyCH4V TGCA 6 cut(s) 20, 156, 573, 743, 892, 992
HpyF10VI GCNNNNNNNGC 9 cut(s) 379, 426, 449, 515, 546, 579, 629, 789, 1062
HpyF3I CTNAG 8 cut(s) 150, 369, 394, 480, 505, 544, 768, 873
Hsp92II CATG 5 cut(s) 100, 494, 577, 761, 1108
Kzo9I GATC 4 cut(s) 184, 326, 703, 956
LguI GCTCTTC 1 cut(s) 966
LmnI GCTCC 3 cut(s) 348, 545, 1062
Lsp1109I GCAGC 3 cut(s) 619, 892, 1043
LweI GCATC 4 cut(s) 391, 608, 666, 730
MaeI CTAG 6 cut(s) 213, 519, 624, 789, 983, 1114
MaeIII GTNAC 1 cut(s) 760
MalI GATC 4 cut(s) 186, 328, 705, 958
MbiI CCGCTC 2 cut(s) 108, 942
MboI GATC 4 cut(s) 184, 326, 703, 956
MboII GAAGA 6 cut(s) 55, 604, 659, 926, 983, 1103
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 4 cut(s) 72, 124, 158, 370
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 8 cut(s) 21, 266, 279, 475, 512, 666, 935, 1044
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 185, 826
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 3 cut(s) 246, 294, 1011
MslI CAYNNNNRTG 1 cut(s) 758
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 4 cut(s) 149, 509, 632, 872
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 2 cut(s) 11, 72
MspR9I CCNGG 2 cut(s) 72, 363
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 9 cut(s) 379, 426, 449, 515, 546, 579, 629, 789, 1062
NciI CCSGG 1 cut(s) 72
NdeII GATC 4 cut(s) 184, 326, 703, 956
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 5 cut(s) 100, 494, 577, 761, 1108
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 966
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PctI GAATGC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 27, 136, 209, 650
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 4 cut(s) 634, 713, 907, 1058
PleI GAGTC 2 cut(s) 185, 826
PpsI GAGTC 2 cut(s) 185, 826
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 2 cut(s) 145, 976
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 2 cut(s) 100, 548
PspXI VCTCGAGB 1 cut(s) 50
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 4 cut(s) 149, 509, 632, 872
RsaI GTAC 3 cut(s) 9, 227, 338
RsaNI GTAC 3 cut(s) 8, 226, 337
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 966
SaqAI TTAA 3 cut(s) 246, 294, 1011
SatI GCNGC 4 cut(s) 633, 712, 906, 1057
Sau3AI GATC 4 cut(s) 184, 326, 703, 956
Sau96I GGNCC 2 cut(s) 100, 548
SchI GAGTC 2 cut(s) 185, 826
ScrFI CCNGG 2 cut(s) 72, 363
SduI GDGCHC 4 cut(s) 72, 124, 158, 370
SfaNI GCATC 4 cut(s) 391, 608, 666, 730
Sfr274I CTCGAG 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 4 cut(s) 50, 293, 563, 920
SmoI CTYRAG 4 cut(s) 50, 293, 563, 920
Sse9I AATT 8 cut(s) 21, 266, 279, 475, 512, 666, 935, 1044
SsiI CCGC 5 cut(s) 106, 380, 711, 942, 954
SspMI CTAG 6 cut(s) 213, 519, 624, 789, 983, 1114
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 70, 361
StyI CCWWGG 1 cut(s) 1037
TaaI ACNGT 3 cut(s) 78, 802, 860
TaqI TCGA 3 cut(s) 30, 51, 66
TasI AATT 8 cut(s) 21, 266, 279, 475, 512, 666, 935, 1044
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 4 cut(s) 27, 136, 209, 650
Tru1I TTAA 3 cut(s) 246, 294, 1011
Tru9I TTAA 3 cut(s) 246, 294, 1011
TscAI CASTG 2 cut(s) 807, 916
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 3 cut(s) 632, 905, 1056
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 6 cut(s) 54, 156, 343, 737, 746, 984
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 2 cut(s) 807, 916
Vha464I CTTAAG 1 cut(s) 293
VneI GTGCAC 1 cut(s) 154
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 6 cut(s) 213, 519, 624, 789, 983, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.