Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0008254

Physical Location & Seq

Genomic Coordinates Reverse (-)

96048 .. 97483

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggctgtaccggtgtctgcaatcggatttgaaggatatgaaaagaggctcgaggtctgtttcttcgagccaggactgtttgctgaccctaatggcatgggtctccgcactttgtcaaaagctcaaattgatgagattctgaaaccagctgaatgcactattgtttcatcactgtcgaatgatgatctggactcgtatgtcctttcggaatccagcctctttgtgtacccatacaaagttatcatcaaaacttgcgggacaacgaaattgcttcgctcaattcctgccattcttaagttggcagagactctctcactcgccgtgagatctgtgaggtactctcgtggaagcttcatatttcctggtgctcagccttccccacatcgtagcttctcagaggaagtatctgtccttgatggccattttggcaagcttggtttggcaagcagagcctacgttatgggtagccctgacaatgctcagaaatggcatgtttactctgcctcggctgagttggcaagtttattctggggagcacgcccctcaggccccgtctacactcttgagatgtgcatgactggcttggacaggaagaaagcatcagtgttttacaagacagatgcaagttcagctgctattatgactgaagattctggcatcaggaagattctcccaaagtctgaaatctgtgactttgagtttgatccttgcggctactctatgaactccatcgaaggggatgcaatttctaccattcatgtgacacctgaagacggtttcagctatgctagctttgaaacagtgggctacaacttcaaggatgtgaacttgacccatctgatcaagagggttctggattgcttcaaaccagctgagttctctgtgtctctgcattccaccattgctgcaagtgaagaacttgatttccctctggaattgagcggatactgttgcggatcaacaaactatgaagaactgggtctaggaggtgcagtcatctaccacagctttgccaaggacgaaggttctcagtctccaaggtcaattctaaaatgctgctggagcgaggacgagaaggacgaggaagttgaagagagagttctggacaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

371

Amino Acids

40.78

Weight (kDa)

4.91

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02470 AT3G02470 AT3G02470 AT5G15950 AT5G15950
fragaria_vesca	FvH4_6g45760 FvH4_6g45760 FvH4_6g45760
malus_domestica	MD09G1079800.v1.1 MD17G1070300.v1.1
prunus_persica	Prupe.3G243900_v2.0.a1
pyrus_communis	pycom09g00660 pycom17g07030
rosa_chinensis	RchiOBHm_Chr2g0163961
rosa_laevigata	RLG00000021429
rosa_multiflora	Rmu_ssc0000432.1_g000023
rosa_roxburghii	Rroxscaffold_2G00086890
rosa_rugosa	Rorug02G0505200
rosa_samantha	Rh2AG573800 Rh2BG584600 Rh2CG555500 Rh2DG593900
rosa_wichuraiana	Rw2G047460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	942
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	5 cut(s)	106, 255, 711, 942, 954
AclWI	GGATC	2 cut(s)	698, 964
AcoI	YGGCCR	1 cut(s)	418
AcuI	CTGAAG	2 cut(s)	666, 789
AfaI	GTAC	3 cut(s)	9, 227, 338
AfiI	CCNNNNNNNGG	2 cut(s)	735, 773
AflII	CTTAAG	1 cut(s)	293
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	32, 797, 817, 865, 1091
AjnI	CCWGG	2 cut(s)	70, 361
AloI	GAACNNNNNNTCC	2 cut(s)	909, 941
Alw21I	GWGCWC	2 cut(s)	370, 538
Alw26I	GTCTC	4 cut(s)	107, 299, 891, 1038
AlwI	GGATC	2 cut(s)	698, 964
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	418, 547
ApeKI	GCWGC	3 cut(s)	632, 905, 1056
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AsiGI	ACCGGT	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	548
AsuNHI	GCTAGC	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	544
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BalI	TGGCCA	1 cut(s)	420
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	370, 538
BbvI	GCAGC	3 cut(s)	619, 892, 1043
BccI	CCATC	3 cut(s)	410, 737, 843
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	2 cut(s)	72, 363
BciVI	GTATCC	1 cut(s)	938
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	4 cut(s)	107, 299, 891, 1038
BfaI	CTAG	3 cut(s)	789, 983, 1114
BfrI	CTTAAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	938
BglI	GCCNNNNNGGC	2 cut(s)	426, 546
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	4 cut(s)	633, 712, 906, 1057
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	4 cut(s)	634, 713, 907, 1058
Bme1390I	CCNGG	2 cut(s)	72, 363
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	2 cut(s)	72, 363
BmrI	ACTGGG	1 cut(s)	986
BmsI	GCATC	4 cut(s)	608, 610, 666, 730
BmtI	GCTAGC	1 cut(s)	792
BmuI	ACTGGG	1 cut(s)	986
BpiI	GAAGAC	1 cut(s)	777
BplI	GAGNNNNNCTC	4 cut(s)	296, 328, 325, 357
BpmI	CTGGAG	1 cut(s)	1081
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	504, 1014, 1037
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	2 cut(s)	735, 773
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	583, 981
Bse21I	CCTNAGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	72, 363
BseDI	CCNNGG	3 cut(s)	504, 1014, 1037
BseGI	GGATG	2 cut(s)	745, 826
BseLI	CCNNNNNNNGG	2 cut(s)	735, 773
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	7 cut(s)	383, 408, 494, 501, 558, 864, 1043
BseNI	ACTGG	2 cut(s)	583, 981
BseXI	GCAGC	3 cut(s)	619, 892, 1043
BsgI	GTGCAG	1 cut(s)	1011
BshFI	GGCC	2 cut(s)	420, 549
BshTI	ACCGGT	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	370, 538
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	735, 773
BsmAI	GTCTC	4 cut(s)	107, 299, 891, 1038
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	158, 892
BsnI	GGCC	2 cut(s)	420, 549
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	370, 538
Bsp143I	GATC	5 cut(s)	184, 326, 703, 840, 956
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	5 cut(s)	106, 255, 711, 942, 954
BspANI	GGCC	2 cut(s)	420, 549
BspCNI	CTCAG	7 cut(s)	382, 407, 493, 502, 557, 865, 1042
BspLI	GGNNCC	1 cut(s)	550
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	698, 964
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	942
BsrDI	GCAATG	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	583, 981
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	504, 1014, 1037
BssMI	GATC	5 cut(s)	184, 326, 703, 840, 956
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	1014, 1037
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	72, 363
Bst4CI	ACNGT	5 cut(s)	78, 174, 776, 802, 950
Bst6I	CTCTTC	1 cut(s)	1086
BstAFI	CTTAAG	1 cut(s)	293
BstC8I	GCNNGC	4 cut(s)	431, 445, 538, 790
BstDEI	CTNAG	7 cut(s)	369, 394, 480, 510, 544, 873, 1029
BstF5I	GGATG	2 cut(s)	745, 826
BstKTI	GATC	5 cut(s)	187, 329, 706, 843, 959
BstMAI	GTCTC	4 cut(s)	107, 299, 891, 1038
BstMBI	GATC	5 cut(s)	184, 326, 703, 840, 956
BstMWI	GCNNNNNNNGC	8 cut(s)	426, 449, 515, 546, 579, 629, 789, 1062
BstNI	CCWGG	2 cut(s)	72, 363
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	70, 361
BstV1I	GCAGC	3 cut(s)	619, 892, 1043
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu36I	CCTNAGG	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	420, 549
BtsCI	GGATG	2 cut(s)	745, 826
BtsIMutI	CAGTG	3 cut(s)	170, 609, 807
Cac8I	GCNNGC	4 cut(s)	431, 445, 538, 790
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	3 cut(s)	8, 226, 337
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	4 cut(s)	97, 491, 574, 758
CviQI	GTAC	3 cut(s)	8, 226, 337
DdeI	CTNAG	7 cut(s)	369, 394, 480, 510, 544, 873, 1029
DpnI	GATC	5 cut(s)	186, 328, 705, 842, 958
DpnII	GATC	5 cut(s)	184, 326, 703, 840, 956
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	1086
EarI	CTCTTC	1 cut(s)	1086
Eco130I	CCWWGG	2 cut(s)	1014, 1037
Eco31I	GGTCTC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	666, 789
Eco81I	CCTNAGG	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	70, 361
EcoT14I	CCWWGG	2 cut(s)	1014, 1037
ErhI	CCWWGG	2 cut(s)	1014, 1037
FaeI	CATG	4 cut(s)	100, 494, 577, 761
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	4 cut(s)	96, 490, 573, 757
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	840
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	4 cut(s)	633, 712, 906, 1057
FokI	GGATG	2 cut(s)	752, 833
Fsp4HI	GCNGC	4 cut(s)	633, 712, 906, 1057
FspBI	CTAG	3 cut(s)	789, 983, 1114
GluI	GCNGC	4 cut(s)	633, 712, 906, 1057
GsuI	CTGGAG	1 cut(s)	1081
HaeIII	GGCC	2 cut(s)	420, 549
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	4 cut(s)	100, 494, 577, 761
HindIII	AAGCTT	2 cut(s)	349, 431
HinfI	GANTC	6 cut(s)	136, 191, 209, 307, 650, 667
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	4 cut(s)	226, 496, 556, 826
Hpy188I	TCNGA	7 cut(s)	26, 141, 208, 397, 483, 682, 840
Hpy188III	TCNNGA	7 cut(s)	188, 563, 661, 844, 854, 932, 1103
Hpy8I	GTNNAC	4 cut(s)	226, 496, 556, 826
HpyAV	CCTTC	5 cut(s)	26, 384, 728, 1016, 1069
HpyCH4III	ACNGT	5 cut(s)	78, 174, 776, 802, 950
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	8 cut(s)	20, 156, 573, 623, 743, 892, 908, 992
HpyF10VI	GCNNNNNNNGC	8 cut(s)	426, 449, 515, 546, 579, 629, 789, 1062
HpyF3I	CTNAG	7 cut(s)	369, 394, 480, 510, 544, 873, 1029
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	100, 494, 577, 761
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	5 cut(s)	184, 326, 703, 840, 956
LmnI	GCTCC	2 cut(s)	533, 1062
Lsp1109I	GCAGC	3 cut(s)	619, 892, 1043
LweI	GCATC	4 cut(s)	608, 610, 666, 730
MaeI	CTAG	3 cut(s)	789, 983, 1114
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	689, 760
MalI	GATC	5 cut(s)	186, 328, 705, 842, 958
MbiI	CCGCTC	1 cut(s)	942
MboI	GATC	5 cut(s)	184, 326, 703, 840, 956
MboII	GAAGA	8 cut(s)	55, 604, 659, 676, 782, 926, 983, 1103
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	370, 538
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	6 cut(s)	126, 266, 279, 744, 935, 1044
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	185, 301
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	758
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	3 cut(s)	149, 632, 872
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	72, 363
Mva1269I	GAATGC	2 cut(s)	158, 892
MvaI	CCWGG	2 cut(s)	72, 363
MwoI	GCNNNNNNNGC	8 cut(s)	426, 449, 515, 546, 579, 629, 789, 1062
NdeII	GATC	5 cut(s)	184, 326, 703, 840, 956
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	4 cut(s)	100, 494, 577, 761
NlaIV	GGNNCC	1 cut(s)	550
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	689, 760
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	1077
PctI	GAATGC	2 cut(s)	158, 892
PfeI	GAWTC	4 cut(s)	136, 209, 650, 667
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	634, 713, 907, 1058
PleI	GAGTC	2 cut(s)	185, 301
PpsI	GAGTC	2 cut(s)	185, 301
Psp6I	CCWGG	2 cut(s)	70, 361
PspGI	CCWGG	2 cut(s)	70, 361
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	548
PspXI	VCTCGAGB	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	3 cut(s)	149, 632, 872
RsaI	GTAC	3 cut(s)	9, 227, 338
RsaNI	GTAC	3 cut(s)	8, 226, 337
RseI	CAYNNNNRTG	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	633, 712, 906, 1057
Sau3AI	GATC	5 cut(s)	184, 326, 703, 840, 956
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	2 cut(s)	185, 301
ScrFI	CCNGG	2 cut(s)	72, 363
SduI	GDGCHC	2 cut(s)	370, 538
SfaNI	GCATC	4 cut(s)	608, 610, 666, 730
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	3 cut(s)	50, 293, 563
SmoI	CTYRAG	3 cut(s)	50, 293, 563
Sse9I	AATT	6 cut(s)	126, 266, 279, 744, 935, 1044
SsiI	CCGC	5 cut(s)	106, 255, 711, 942, 954
SspMI	CTAG	3 cut(s)	789, 983, 1114
StyD4I	CCNGG	2 cut(s)	70, 361
StyI	CCWWGG	2 cut(s)	1014, 1037
TaaI	ACNGT	5 cut(s)	78, 174, 776, 802, 950
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	51, 66, 176, 732
TasI	AATT	6 cut(s)	126, 266, 279, 744, 935, 1044
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	4 cut(s)	136, 209, 650, 667
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	177, 609, 807
TseFI	GTSAC	2 cut(s)	689, 760
TseI	GCWGC	3 cut(s)	632, 905, 1056
Tsp45I	GTSAC	2 cut(s)	689, 760
TspDTI	ATGAA	6 cut(s)	54, 156, 343, 737, 746, 984
TspRI	CASTG	3 cut(s)	177, 609, 807
Vha464I	CTTAAG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	3 cut(s)	789, 983, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.