Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Reverse (-)

696242 .. 698164

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGTCGAATCTCCTGAAAGCCCTAATCCGATCTCAGATTCTTCCATCTTCCAGGAGGAATTTCAGTGTGGCGACCACACAGCTTGGCATTCCAACAGACGATCTAGTCGGCAATCACACCGCCAAATGGATGCAGGATAGAAGCAAGAAATCACCTATGGAACTGATTAGTGAGGTTCCACCTATCAAAGTTGATGGAAGGATTGTTGCTTGTGAAGGAGACACCAATCCGGCCCTAGGTCATCCAATCGAGTTCATATGCCTCGACCTAAATGAGCCTGCGATCTGCAAGTACTGCGGCCTTCGTTATGTTCAAGATCATCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

6.95

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	67 - 104	8e-15	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AciI	CCGC	2 cut(s)	123, 300
AcsI	RAATTY	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	129, 239
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	234, 301
ApoI	RAATTY	1 cut(s)	61
AspA2I	CCTAGG	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	147, 317
AvrII	CCTAGG	1 cut(s)	238
BccI	CCATC	2 cut(s)	55, 191
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	107, 239
BisI	GCNGC	1 cut(s)	301
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 239
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	138, 244
BseLI	CCNNNNNNNGG	2 cut(s)	129, 239
BseMII	CTCAG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	236, 303
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	129, 239
BsmAI	GTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	236, 303
Bsp143I	GATC	4 cut(s)	32, 103, 285, 319
BspACI	CCGC	2 cut(s)	123, 300
BspANI	GGCC	2 cut(s)	236, 303
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	4 cut(s)	32, 103, 285, 319
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	138, 244
BstKTI	GATC	4 cut(s)	35, 106, 288, 322
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	4 cut(s)	32, 103, 285, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	236, 303
BtsCI	GGATG	2 cut(s)	138, 244
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviJI	RGCY	5 cut(s)	23, 85, 236, 280, 303
CviKI_1	RGCY	5 cut(s)	23, 85, 236, 280, 303
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	4 cut(s)	34, 105, 287, 321
DpnII	GATC	4 cut(s)	32, 103, 285, 319
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaiI	YATR	4 cut(s)	161, 260, 262, 312
FauNDI	CATATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	145, 231
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	107, 239
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	236, 303
HapII	CCGG	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	10, 40
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	147, 317
Hpy188I	TCNGA	2 cut(s)	32, 39
Hpy188III	TCNNGA	2 cut(s)	16, 317
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	195, 212, 314
HpyCH4V	TGCA	2 cut(s)	136, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	32, 103, 285, 319
LpnPI	CCDG	6 cut(s)	29, 40, 67, 122, 246, 294
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	107, 239
MalI	GATC	4 cut(s)	34, 105, 287, 321
MboI	GATC	4 cut(s)	32, 103, 285, 319
MboII	GAAGA	2 cut(s)	35, 42
MluCI	AATT	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	51, 169, 275
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeI	CATATG	1 cut(s)	260
NdeII	GATC	4 cut(s)	32, 103, 285, 319
NlaIV	GGNNCC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	10, 40
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	4 cut(s)	32, 103, 285, 319
Sau96I	GGNCC	1 cut(s)	235
ScaI	AGTACT	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	6 cut(s)	87, 160, 180, 187, 244, 273
SfaNI	GCATC	1 cut(s)	123
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	123, 300
SspMI	CTAG	2 cut(s)	107, 239
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	238
TaqI	TCGA	3 cut(s)	8, 252, 267
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	10, 40
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	61
XmaJI	CCTAGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	107, 239
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.