Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Forward (+)

24039677 .. 24040922

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33980.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGTCGAGTTTGGTGAAATCCCTAATGAAATCGACGGTGTTGGGATCGACGGGGACCAGAAACTTCTGCCTGGTTAGGAGTCAAATCAGCAACCACACGGCCAAATGGATGCAGGATACAAGCAAGAAGTCCCCGATGGAGTTGATCAACGAAGTTCCACCCATCAAGGTTGAGGGCAGGATTATTGCATGTGAAGGGGACACCAATATCGCACTTGGACACCCGATTGAATTCATATGCCTTGACCTTCCTGAGCCGGCTGTCTGCAAGTATTGCGGTCTTCGTTACGTGCAGGATCACCACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

7.68

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	29 - 66	2.5e-14	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	55, 306
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	72
AlwI	GGATC	2 cut(s)	55, 306
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	28, 293
AvaII	GGWCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	275
BccI	CCATC	2 cut(s)	133, 173
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	3 cut(s)	70, 118, 215
BsmFI	GGGAC	3 cut(s)	70, 118, 215
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	47, 147, 298
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	55, 306
BsrFI	RCCGGY	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	259
BssMI	GATC	3 cut(s)	47, 147, 298
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	50, 150, 301
BstMBI	GATC	3 cut(s)	47, 147, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	3 cut(s)	104, 259, 263
CviKI_1	RGCY	3 cut(s)	104, 259, 263
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	49, 149, 300
DpnII	GATC	3 cut(s)	47, 147, 298
EaeI	YGGCCR	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	195
FaiI	YATR	3 cut(s)	193, 239, 241
FaqI	GGGAC	3 cut(s)	70, 118, 215
FatI	CATG	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	147
FokI	GGATG	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	195
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	2 cut(s)	28, 293
Hpy188III	TCNNGA	1 cut(s)	254
Hpy99I	CGWCG	3 cut(s)	10, 40, 55
HpyAV	CCTTC	2 cut(s)	191, 260
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	115, 191, 270, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	47, 147, 298
LpnPI	CCDG	8 cut(s)	59, 73, 86, 101, 166, 267, 273, 281
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	49, 149, 300
MboI	GATC	3 cut(s)	47, 147, 298
MboII	GAAGA	1 cut(s)	275
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	259
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	276
NaeI	GCCGGC	1 cut(s)	261
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	3 cut(s)	47, 147, 298
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	195
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	47, 147, 298
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	3 cut(s)	174, 252, 294
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	8, 35, 50
TasI	AATT	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	44, 226
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.