Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014578.1

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Reverse (-)

8596 .. 9799

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014578.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggcgtccagactggtgaaatccctaatcaaatcatcgtcgggtttgggatcgacggggaccagaaacttctgcctcgttcggagtcaaatcagcaaccacactgccaaatggatgcaggatacaagtaagaagtcccccatggagttgatcaacgaagttccacccatcaaggttgagggcaggattgttgcatgtgaaggggactccgatcccgcactagggcacccgattgaatttatatgccttgaccttcctcagccggctatctgcaagtattgcggtcttcgctatgtgcaggatcaccaccactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

104

Amino Acids

11.49

Weight (kDa)

8.33

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	225
AciI	CCGC	2 cut(s)	216, 282
AclWI	GGATC	3 cut(s)	58, 206, 309
AcsI	RAATTY	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	221, 222
AgsI	TTSAA	1 cut(s)	236
AlwI	GGATC	3 cut(s)	58, 206, 309
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	28, 296
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	150
BfaI	CTAG	2 cut(s)	221, 313
BfuI	GTATCC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	61, 227
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 222
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	221, 222
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	3 cut(s)	73, 121, 218
BslI	CCNNNNNNNGG	2 cut(s)	221, 222
BsmFI	GGGAC	3 cut(s)	73, 121, 218
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	50, 150, 211, 301
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	216, 282
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	61, 227
BspPI	GGATC	3 cut(s)	58, 206, 309
BspT107I	GGYRCC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	4 cut(s)	50, 150, 211, 301
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	53, 153, 214, 304
BstMBI	GATC	4 cut(s)	50, 150, 211, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 288
BstNSI	RCATGY	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	60
CviAII	CATG	2 cut(s)	142, 195
CviJI	RGCY	2 cut(s)	262, 266
CviKI_1	RGCY	2 cut(s)	262, 266
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	52, 152, 213, 303
DpnII	GATC	4 cut(s)	50, 150, 211, 301
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	145, 198
FaiI	YATR	5 cut(s)	143, 196, 242, 244, 294
FaqI	GGGAC	3 cut(s)	73, 121, 218
FatI	CATG	2 cut(s)	141, 194
FauI	CCCGC	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	150
FokI	GGATG	1 cut(s)	127
FspBI	CTAG	2 cut(s)	221, 313
HapII	CCGG	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	145, 198
HinfI	GANTC	2 cut(s)	85, 206
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	28, 296
Hpy188I	TCNGA	2 cut(s)	84, 211
Hpy188III	TCNNGA	1 cut(s)	9
Hpy99I	CGWCG	2 cut(s)	43, 58
HpyAV	CCTTC	2 cut(s)	194, 263
HpyCH4V	TGCA	4 cut(s)	118, 194, 273, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 288
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	145, 198
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	50, 150, 211, 301
LpnPI	CCDG	6 cut(s)	22, 76, 104, 169, 276, 284
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	221, 313
MalI	GATC	4 cut(s)	52, 152, 213, 303
MboI	GATC	4 cut(s)	50, 150, 211, 301
MboII	GAAGA	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	94, 200
MnlI	CCTC	3 cut(s)	86, 172, 267
MroNI	GCCGGC	1 cut(s)	262
MspI	CCGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	279, 288
NaeI	GCCGGC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	4 cut(s)	50, 150, 211, 301
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	145, 198
NlaIV	GGNNCC	2 cut(s)	61, 227
NspI	RCATGY	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	264
PleI	GAGTC	2 cut(s)	93, 200
PpsI	GAGTC	2 cut(s)	93, 200
PspN4I	GGNNCC	2 cut(s)	61, 227
PspPI	GGNCC	1 cut(s)	60
Sau3AI	GATC	4 cut(s)	50, 150, 211, 301
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	2 cut(s)	94, 200
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	177, 255
SfaNI	GCATC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	216, 282
SspMI	CTAG	2 cut(s)	221, 313
StyI	CCWWGG	1 cut(s)	141
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	236
TscAI	CASTG	1 cut(s)	109
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	198
XspI	CTAG	2 cut(s)	221, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.