Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Forward (+)

68368734 .. 68369945

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG471300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGTCGAGACTGGTGAAATCCCTAATCAAATCGTCGTCGGGTTTGGGGACGAGAAATTTCTGCCTCGTTCGGAGTCAAATCAGCAACCACACCGCCAAATGGATGCAGGATACAAGTAAGAAGTCCCCCATGGAGTTGATCAACGAAGTTCCACCCATCAAGGTTGAGAGCAGGATTGTTGCATGTGAAGGAGACACCAATCCCGCACTAGGGCACCCGATTGAATTTATATGCCTTGACCTTCCTGAGCCGGCTATCTGCAAGTATTGCGGTCTTCGCTATGTGCAGGATCACCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

101

Amino Acids

11.29

Weight (kDa)

8.33

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	58 - 95	4e-15	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	3 cut(s)	96, 207, 273
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	58, 227
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	102, 212, 213
AgsI	TTSAA	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	4, 189
AlwI	GGATC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	58, 227
AsuHPI	GGTGA	2 cut(s)	28, 287
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	269
BccI	CCATC	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	4, 189
BfaI	CTAG	2 cut(s)	212, 304
BfuI	GTATCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	218
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 212, 213
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	102, 212, 213
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	2 cut(s)	64, 112
BslI	CCNNNNNNNGG	3 cut(s)	102, 212, 213
BsmAI	GTCTC	2 cut(s)	4, 189
BsmFI	GGGAC	2 cut(s)	64, 112
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	141, 292
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	96, 207, 273
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	141, 292
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	144, 295
BstMAI	GTCTC	2 cut(s)	4, 189
BstMBI	GATC	2 cut(s)	141, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 279
BstNSI	RCATGY	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	253
CviAII	CATG	2 cut(s)	133, 186
CviJI	RGCY	2 cut(s)	253, 257
CviKI_1	RGCY	2 cut(s)	253, 257
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	143, 294
DpnII	GATC	2 cut(s)	141, 292
Eco130I	CCWWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	136, 189
FaiI	YATR	5 cut(s)	134, 187, 233, 235, 285
FaqI	GGGAC	2 cut(s)	64, 112
FatI	CATG	2 cut(s)	132, 185
FauI	CCCGC	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	141
FokI	GGATG	1 cut(s)	118
FspBI	CTAG	2 cut(s)	212, 304
HapII	CCGG	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	136, 189
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	28, 287
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	9, 248
Hpy99I	CGWCG	3 cut(s)	10, 40, 43
HpyAV	CCTTC	2 cut(s)	185, 254
HpyCH4V	TGCA	4 cut(s)	109, 185, 264, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 279
HpyF3I	CTNAG	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	136, 189
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 292
LpnPI	CCDG	5 cut(s)	95, 160, 261, 267, 275
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	212, 304
MalI	GATC	2 cut(s)	143, 294
MboI	GATC	2 cut(s)	141, 292
MboII	GAAGA	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	58, 227
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	253
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	270, 279
NaeI	GCCGGC	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	141, 292
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	136, 189
NlaIV	GGNNCC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	141, 292
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	2 cut(s)	168, 246
SfaNI	GCATC	1 cut(s)	96
Sse9I	AATT	2 cut(s)	58, 227
SsiI	CCGC	3 cut(s)	96, 207, 273
SspMI	CTAG	2 cut(s)	212, 304
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	58, 227
XapI	RAATTY	2 cut(s)	58, 227
XceI	RCATGY	1 cut(s)	189
XspI	CTAG	2 cut(s)	212, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.