Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Forward (+)

21355310 .. 21356679

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCATCCAGTCTATTTAGAACCCTAATCAGATCGTCCAAATTGGGATCAGCAGGGACCAGAAATTTCAGCCTCGTCAGGACTCAAATCAGCGAGCACACCGCCAAATGGATGCAGACAAGCAAGAAATCTCCCATGGAGTTGATCAATGAAGTCCCACCCATCAAGGTTGAGGGCAGGATTGTTGCATGTGAAGGAGACACCAATCCCTCACTTGGGCACCCAATTGAATTCATATGCCTTGACCTGGATGAGCCAGCTATCTGCAAGTATTGTGGTCTTCGATATGTGCAACATCACCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

8.43

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	59 - 96	1.5e-14	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	64, 230
AfiI	CCNNNNNNNGG	4 cut(s)	108, 215, 216, 247
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	55
ApoI	RAATTY	2 cut(s)	64, 230
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	58, 221
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	14, 102
BpiI	GAAGAC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 215, 216, 247
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	5, 117, 256
BseLI	CCNNNNNNNGG	4 cut(s)	108, 215, 216, 247
BseNI	ACTGG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	70, 140
BslI	CCNNNNNNNGG	4 cut(s)	108, 215, 216, 247
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	70, 140
Bsp1286I	GDGCHC	2 cut(s)	99, 222
Bsp143I	GATC	3 cut(s)	32, 47, 144
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	58, 221
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	32, 47, 144
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	95, 258
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	5, 117, 256
BstKTI	GATC	3 cut(s)	35, 50, 147
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	32, 47, 144
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	5, 117, 256
Cac8I	GCNNGC	2 cut(s)	95, 258
Cfr13I	GGNCC	1 cut(s)	57
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	2 cut(s)	136, 189
CviJI	RGCY	3 cut(s)	72, 256, 260
CviKI_1	RGCY	3 cut(s)	72, 256, 260
DpnI	GATC	3 cut(s)	34, 49, 146
DpnII	GATC	3 cut(s)	32, 47, 144
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 192
FaiI	YATR	5 cut(s)	137, 190, 236, 238, 288
FaqI	GGGAC	2 cut(s)	70, 140
FatI	CATG	2 cut(s)	135, 188
FauNDI	CATATG	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	144
FokI	GGATG	2 cut(s)	124, 263
FspBI	CTAG	1 cut(s)	307
Hin1II	CATG	2 cut(s)	139, 192
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	115, 188, 267, 292
Hsp92II	CATG	2 cut(s)	139, 192
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	32, 47, 144
LpnPI	CCDG	8 cut(s)	22, 39, 64, 73, 163, 233, 260, 270
LweI	GCATC	2 cut(s)	14, 102
MaeI	CTAG	1 cut(s)	307
MalI	GATC	3 cut(s)	34, 49, 146
MboI	GATC	3 cut(s)	32, 47, 144
MboII	GAAGA	1 cut(s)	272
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	99, 222
MluCI	AATT	4 cut(s)	41, 64, 225, 230
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	83, 166, 220
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	3 cut(s)	32, 47, 144
NlaIII	CATG	2 cut(s)	139, 192
NlaIV	GGNNCC	2 cut(s)	58, 221
NspI	RCATGY	1 cut(s)	192
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	58, 221
PspPI	GGNCC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	32, 47, 144
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	99, 222
SetI	ASST	3 cut(s)	171, 249, 262
SfaNI	GCATC	2 cut(s)	14, 102
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	41, 64, 225, 230
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	283
TasI	AATT	4 cut(s)	41, 64, 225, 230
TspDTI	ATGAA	2 cut(s)	165, 223
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	64, 230
XceI	RCATGY	1 cut(s)	192
XspI	CTAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.