Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Forward (+)

46013895 .. 46015331

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATGGAATACGGAGGCTACGGCTTCTCCTTGAGTAGGGATTTCATGAGCTATGACTATGGGAGAGATACAAGTAAGAAGTCCCCGATGGAGTTGATCAACCAAGTTCACCCCATCAAGGTTGAGGGCATGATCATTGCATGTGAAGGGGATACCAATCCCGCACTTGGTCACCCCATTGAATTCATATGCCTTGACCTTCATGAGCCGGCTATCTGCTACGTCCAGGATCACCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

80

Amino Acids

9.1

Weight (kDa)

5.08

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	45 - 73	4.9e-07	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	36, 118, 167
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
AlwI	GGATC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	101, 164, 224
BccI	CCATC	2 cut(s)	82, 122
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	96, 132
BfaI	CTAG	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 118, 167
Bse118I	RCCGGY	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	227
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	36, 118, 167
BseMI	GCAATG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	36, 118, 167
BsmFI	GGGAC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	96, 132, 229
BspACI	CCGC	1 cut(s)	162
BspHI	TCATGA	2 cut(s)	45, 202
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	3 cut(s)	96, 132, 229
Bst2UI	CCWGG	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	99, 135, 232
BstMBI	GATC	3 cut(s)	96, 132, 229
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	144
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	2 cut(s)	45, 202
Cfr10I	RCCGGY	1 cut(s)	208
CviAII	CATG	4 cut(s)	46, 130, 141, 203
CviJI	RGCY	5 cut(s)	18, 24, 51, 208, 212
CviKI_1	RGCY	5 cut(s)	18, 24, 51, 208, 212
DpnI	GATC	3 cut(s)	98, 134, 231
DpnII	GATC	3 cut(s)	96, 132, 229
Eco91I	GGTNACC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	49, 133, 144, 206
FaiI	YATR	8 cut(s)	47, 54, 60, 131, 142, 188, 190, 204
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	45, 129, 140, 202
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	188
FbaI	TGATCA	2 cut(s)	96, 132
FspBI	CTAG	1 cut(s)	241
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	4 cut(s)	49, 133, 144, 206
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	3 cut(s)	101, 164, 224
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	46, 203
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	140, 209
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	49, 133, 144, 206
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Ksp22I	TGATCA	2 cut(s)	96, 132
Kzo9I	GATC	3 cut(s)	96, 132, 229
LpnPI	CCDG	3 cut(s)	212, 222, 239
MaeI	CTAG	1 cut(s)	241
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	98, 134, 231
MboI	GATC	3 cut(s)	96, 132, 229
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	2 cut(s)	8, 118
MroNI	GCCGGC	1 cut(s)	208
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	210
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	3 cut(s)	96, 132, 229
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	49, 133, 144, 206
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	144
PagI	TCATGA	2 cut(s)	45, 202
PdiI	GCCGGC	1 cut(s)	210
PfoI	TCCNGGA	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	96, 132, 229
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	4 cut(s)	53, 123, 201, 225
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	225
TaiI	ACGT	1 cut(s)	225
TasI	AATT	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	34, 175, 191
TspGWI	ACGGA	1 cut(s)	27
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.