Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Reverse (-)

314890 .. 316376

Gene Structure 1487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGAGTTGATCAACGAAGTTCCACCCATCAAGGTTGAGGACAGGATTGTTGCATGTGAAGGAGACTCCAATCCCGCACTAGGGCACCCGATTGAATTTATATGCCTTGACCTTCCTAAGCCGGCTATCTGCAAGTATTGCGGTCTTCGCTATGTGCAGGATCACCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

57

Amino Acids

6.44

Weight (kDa)

5.34

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	15 - 51	9.3e-16	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	2 cut(s)	75, 141
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	80, 81
AgsI	TTSAA	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	137
BccI	CCATC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	80, 172
BmiI	GGNNCC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 81
Bse118I	RCCGGY	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	80, 81
BseSI	GKGCMC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	80, 81
BsmAI	GTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	9, 160
BspACI	CCGC	2 cut(s)	75, 141
BspLI	GGNNCC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	2 cut(s)	9, 160
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	12, 163
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	2 cut(s)	9, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 147
BstNSI	RCATGY	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	121
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	2 cut(s)	121, 125
CviKI_1	RGCY	2 cut(s)	121, 125
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	11, 162
DpnII	GATC	2 cut(s)	9, 160
FaeI	CATG	1 cut(s)	57
FaiI	YATR	4 cut(s)	55, 101, 103, 153
FatI	CATG	1 cut(s)	53
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	9
FspBI	CTAG	2 cut(s)	80, 172
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	53, 122
HpyCH4V	TGCA	3 cut(s)	53, 132, 157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 147
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	57
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 160
LpnPI	CCDG	3 cut(s)	28, 135, 143
MaeI	CTAG	2 cut(s)	80, 172
MalI	GATC	2 cut(s)	11, 162
MboI	GATC	2 cut(s)	9, 160
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	121
MspI	CCGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	138, 147
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	9, 160
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	9, 160
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	2 cut(s)	36, 114
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	75, 141
SspMI	CTAG	2 cut(s)	80, 172
TasI	AATT	1 cut(s)	95
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	2 cut(s)	80, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.