Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009969.1

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Reverse (-)

11072 .. 13603

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009969.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgggagttggcaaattgagggtcagaaatgataagagaacgccagcgtttagagacacaagtgaagcggatcagggacttgaatggcaaccggcagagaatgttgagcacaacatgttcagggaggtcgacatcattatcaagctcctcctccttcgtcaacattgccgggatacaagtaagaagtccccgatggagttgatcaaccaagttcaccccatcaaggttgagggcatgatcattgcatgtgaaggggataccaatcccgcacttggtcaccccattgaattcatatgccttgaccttcatgagccggctatctgctacgtccaggatcaccaccactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

115

Amino Acids

13.2

Weight (kDa)

5.86

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	68, 267
AclWI	GGATC	2 cut(s)	78, 342
AcsI	RAATTY	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	223, 272
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	83, 287
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	78, 342
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	3 cut(s)	206, 269, 329
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	2 cut(s)	187, 227
BciT130I	CCWGG	1 cut(s)	332
BciVI	GTATCC	2 cut(s)	166, 250
BclI	TGATCA	2 cut(s)	201, 237
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	346
BfuI	GTATCC	2 cut(s)	166, 250
Bme1390I	CCNGG	2 cut(s)	170, 332
BmrFI	CCNGG	2 cut(s)	170, 332
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 272
Bse118I	RCCGGY	2 cut(s)	91, 313
Bse3DI	GCAATG	2 cut(s)	163, 240
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	332
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	223, 272
BseMI	GCAATG	2 cut(s)	163, 240
BseRI	GAGGAG	2 cut(s)	137, 140
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	92, 169, 314
BslFI	GGGAC	2 cut(s)	90, 172
BslI	CCNNNNNNNGG	2 cut(s)	223, 272
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	90, 172
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	70, 201, 237, 334
BspACI	CCGC	2 cut(s)	68, 267
BspHI	TCATGA	1 cut(s)	307
BspPI	GGATC	2 cut(s)	78, 342
BsrDI	GCAATG	2 cut(s)	163, 240
BsrFI	RCCGGY	2 cut(s)	91, 313
BssAI	RCCGGY	2 cut(s)	91, 313
BssMI	GATC	4 cut(s)	70, 201, 237, 334
Bst2UI	CCWGG	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	45, 315
BstEII	GGTNACC	1 cut(s)	275
BstKTI	GATC	4 cut(s)	73, 204, 240, 337
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	70, 201, 237, 334
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	2 cut(s)	118, 249
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	168, 330
BsuI	GTATCC	2 cut(s)	166, 250
Cac8I	GCNNGC	2 cut(s)	45, 315
CciI	TCATGA	1 cut(s)	307
Cfr10I	RCCGGY	2 cut(s)	91, 313
CviAII	CATG	4 cut(s)	115, 235, 246, 308
CviJI	RGCY	3 cut(s)	145, 313, 317
CviKI_1	RGCY	3 cut(s)	145, 313, 317
DpnI	GATC	4 cut(s)	72, 203, 239, 336
DpnII	GATC	4 cut(s)	70, 201, 237, 334
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	4 cut(s)	118, 238, 249, 311
FaiI	YATR	6 cut(s)	116, 236, 247, 293, 295, 309
FaqI	GGGAC	2 cut(s)	90, 172
FatI	CATG	4 cut(s)	114, 234, 245, 307
FauI	CCCGC	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	2 cut(s)	201, 237
FblI	GTMKAC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	346
HapII	CCGG	3 cut(s)	92, 169, 314
Hin1II	CATG	4 cut(s)	118, 238, 249, 311
HincII	GTYRAC	2 cut(s)	130, 161
HindII	GTYRAC	2 cut(s)	130, 161
HpaII	CCGG	3 cut(s)	92, 169, 314
HphI	GGTGA	3 cut(s)	206, 269, 329
Hpy166II	GTNNAC	3 cut(s)	130, 161, 214
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	130, 161, 214
HpyAV	CCTTC	3 cut(s)	164, 245, 314
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	118, 238, 249, 311
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
Ksp22I	TGATCA	2 cut(s)	201, 237
Kzo9I	GATC	4 cut(s)	70, 201, 237, 334
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	8 cut(s)	57, 59, 105, 106, 182, 317, 327, 344
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	4 cut(s)	72, 203, 239, 336
MboI	GATC	4 cut(s)	70, 201, 237, 334
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	14, 287
MnlI	CCTC	5 cut(s)	12, 118, 158, 161, 223
MroNI	GCCGGC	1 cut(s)	313
MspI	CCGG	3 cut(s)	92, 169, 314
MspR9I	CCNGG	2 cut(s)	170, 332
MvaI	CCWGG	1 cut(s)	332
NaeI	GCCGGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	170
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	4 cut(s)	70, 201, 237, 334
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	4 cut(s)	118, 238, 249, 311
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	2 cut(s)	118, 249
PagI	TCATGA	1 cut(s)	307
PciI	ACATGT	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	330
PscI	ACATGT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	330
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	128
Sau3AI	GATC	4 cut(s)	70, 201, 237, 334
ScrFI	CCNGG	2 cut(s)	170, 332
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	5 cut(s)	129, 147, 228, 306, 330
Sse9I	AATT	2 cut(s)	14, 287
SsiI	CCGC	2 cut(s)	68, 267
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	168, 330
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	14, 287
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	280, 296
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	2 cut(s)	118, 249
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.