Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012538

Physical Location & Seq

Genomic Coordinates Forward (+)

32364132 .. 32366006

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1236000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGTCCAGTCTATTTAGAACCCTAATCAGATCGTCCAAATTGGGATCAGCAGGGACCAGAAATTTCAGCCTCGTCAGGACTCAAATCAGCGAGCACACCGCCAAATGGATGCAGGATACAAGCAAGAAATCTCCCATGGAGTTGATCAATGAAGTCCCACCCATCAAGGTTGAGGGCAGGATAGTTGCATGTGAAGGAGACACCAATCCCGCACTTGGGCACCCAATTGAATTCATATGCCTTGACCTGGATGAGCCAGCTATCTGCAAGTACTGTGGTCTTCGATATGTGCAAGATCACCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

zf-CHCC

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

6.95

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHCC	PF10276	60 - 97	4.9e-15	Zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03070
fragaria_vesca	FvH4_7g33980 FvH4_7g33980
malus_domestica	MD01G1236000.v1.1
prunus_persica	Prupe.2G326100_v2.0.a1
pyrus_communis	pycom01g24400
rosa_chinensis	RchiOBHm_Chr1g0384211
rosa_laevigata	RLG00000026059
rosa_multiflora	Rmu_sc0005139.1_g000004 Rmu_sc0009969.1_g000006 Rmu_sc0014578.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276850
rosa_rugosa	Rorug01G0445800
rosa_samantha	Rh1AG471300 Rh1BG429100 Rh1CG441700 Rh1DG461800
rosa_wichuraiana	Rw1G040120 Rw7G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	2 cut(s)	102, 213
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	64, 233
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	108, 218, 219, 250
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	55
ApoI	RAATTY	2 cut(s)	64, 233
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	112
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	58, 224
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 218, 219, 250
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	117, 259
BseLI	CCNNNNNNNGG	4 cut(s)	108, 218, 219, 250
BseNI	ACTGG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	70, 143
BslI	CCNNNNNNNGG	4 cut(s)	108, 218, 219, 250
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	70, 143
Bsp1286I	GDGCHC	2 cut(s)	99, 225
Bsp143I	GATC	4 cut(s)	32, 47, 147, 298
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	102, 213
BspLI	GGNNCC	2 cut(s)	58, 224
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	32, 47, 147, 298
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	95, 261
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	117, 259
BstKTI	GATC	4 cut(s)	35, 50, 150, 301
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	32, 47, 147, 298
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	117, 259
Cac8I	GCNNGC	2 cut(s)	95, 261
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	139, 192
CviJI	RGCY	3 cut(s)	72, 259, 263
CviKI_1	RGCY	3 cut(s)	72, 259, 263
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	4 cut(s)	34, 49, 149, 300
DpnII	GATC	4 cut(s)	32, 47, 147, 298
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	142, 195
FaiI	YATR	5 cut(s)	140, 193, 239, 241, 291
FaqI	GGGAC	2 cut(s)	70, 143
FatI	CATG	2 cut(s)	138, 191
FauI	CCCGC	1 cut(s)	220
FauNDI	CATATG	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	147
FokI	GGATG	2 cut(s)	124, 266
FspBI	CTAG	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	142, 195
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	115, 191, 270, 295
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	142, 195
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	32, 47, 147, 298
LpnPI	CCDG	9 cut(s)	22, 39, 64, 73, 101, 166, 236, 263, 273
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	310
MalI	GATC	4 cut(s)	34, 49, 149, 300
MboI	GATC	4 cut(s)	32, 47, 147, 298
MboII	GAAGA	1 cut(s)	275
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	99, 225
MluCI	AATT	4 cut(s)	41, 64, 228, 233
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	2 cut(s)	83, 169
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	4 cut(s)	32, 47, 147, 298
NlaIII	CATG	2 cut(s)	142, 195
NlaIV	GGNNCC	2 cut(s)	58, 224
NspI	RCATGY	1 cut(s)	195
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	58, 224
PspPI	GGNCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
Sau3AI	GATC	4 cut(s)	32, 47, 147, 298
Sau96I	GGNCC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	99, 225
SetI	ASST	3 cut(s)	174, 252, 265
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	4 cut(s)	41, 64, 228, 233
SsiI	CCGC	2 cut(s)	102, 213
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	286
TasI	AATT	4 cut(s)	41, 64, 228, 233
TatI	WGTACW	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	168, 226
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	64, 233
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	1 cut(s)	310
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.