AT3G03150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013170
Physical Location & Seq
Reverse (-)
727516 .. 729638
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03150.1

Sequence Viewer

Length: 366 bp
ATGGCAACCACCAGATCGAAGAGCTTTCAGTTGATCACCAGCTTAAGGAAACACCTAGTTAACACACGCGCTTCCACACGCGCCACCGCCTCTGCTCTCTTCCCTTCACGTCGGAGTGGACATTCCTCGGCGTATGACAAGAACGTGGAGGATGAATTGCATGCAAGTGCAGTACCTGACGAAGTTATAAAGCCAGATTCTGATAAATATTGGTCTCCTCACCCCAAAACAGGAGTCTTCGGTCCCTCTACGACTGAGCACAGCGCCACCGCCGAGGGTGCACACCAGGACACAGCAGTGCTGGAGGAGACCGCCTGGTTTCGCCCAACAAGTCTCGAGGATTCGGACAAGACTCACCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.32

Weight (kDa)

6.43

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3b PF22272 38 - 118 2e-31 Late embryogenesis abundant protein (LEA_3b subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03150 AT5G17165
fragaria_vesca FvH4_7g33540 FvH4_7g33540
malus_domestica MD01G1233000.v1.1 MD07G1305300.v1.1
prunus_persica Prupe.2G323400_v2.0.a1
pyrus_communis pycom01g24140
rosa_chinensis RchiOBHm_Chr1g0383761
rosa_laevigata RLG00000026098
rosa_multiflora Rmu_sc0012471.1_g000009
rosa_roxburghii Rroxscaffold_4G00277230
rosa_rugosa Rorug01G0442300
rosa_samantha Rh1AG467900 Rh1BG425500 Rh1CG438300 Rh1DG458300
rosa_wichuraiana Rw1G040450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccII CGCG 2 cut(s) 69, 81
AciI CCGC 3 cut(s) 87, 270, 312
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 45, 230
AflII CTTAAG 1 cut(s) 43
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 2 cut(s) 285, 314
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 2 cut(s) 24, 42
AluI AGCT 2 cut(s) 24, 42
Alw21I GWGCWC 2 cut(s) 261, 283
Alw26I GTCTC 3 cut(s) 219, 302, 338
Alw44I GTGCAC 1 cut(s) 279
AlwNI CAGNNNCTG 2 cut(s) 176, 200
Ama87I CYCGRG 1 cut(s) 335
ApaLI GTGCAC 1 cut(s) 279
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspLEI GCGC 3 cut(s) 71, 83, 266
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 28, 212, 347
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 2 cut(s) 261, 283
BciT130I CCWGG 2 cut(s) 287, 316
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 3 cut(s) 219, 302, 338
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 287, 316
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 287, 316
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 323
BsaI GGTCTC 2 cut(s) 219, 302
BsaJI CCNNGG 2 cut(s) 126, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 230
BseBI CCWGG 2 cut(s) 287, 316
BseDI CCNNGG 2 cut(s) 126, 273
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 45, 230
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 207, 320
BseSI GKGCMC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 2 cut(s) 69, 81
BsiHKAI GWGCWC 2 cut(s) 261, 283
BsiHKCI CYCGRG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 45, 230
BsmAI GTCTC 3 cut(s) 219, 302, 338
BsmFI GGGAC 1 cut(s) 228
Bso31I GGTCTC 2 cut(s) 219, 302
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 2 cut(s) 261, 283
Bsp143I GATC 2 cut(s) 14, 33
BspACI CCGC 3 cut(s) 87, 270, 312
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 2 cut(s) 69, 81
BspLI GGNNCC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 43
BspTNI GGTCTC 2 cut(s) 219, 302
BssECI CCNNGG 2 cut(s) 126, 273
BssMI GATC 2 cut(s) 14, 33
Bst2UI CCWGG 2 cut(s) 287, 316
Bst6I CTCTTC 2 cut(s) 14, 104
BstAFI CTTAAG 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 2 cut(s) 69, 81
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 3 cut(s) 71, 83, 266
BstKTI GATC 2 cut(s) 17, 36
BstMAI GTCTC 3 cut(s) 219, 302, 338
BstMBI GATC 2 cut(s) 14, 33
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 2 cut(s) 287, 316
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 285, 314
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 2 cut(s) 69, 81
BstV2I GAAGAC 1 cut(s) 229
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 2 cut(s) 176, 200
CfoI GCGC 3 cut(s) 71, 83, 266
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 161, 359
CviJI RGCY 3 cut(s) 24, 42, 193
CviKI_1 RGCY 3 cut(s) 24, 42, 193
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 16, 35
DpnII GATC 2 cut(s) 14, 33
Eam1104I CTCTTC 2 cut(s) 14, 104
EarI CTCTTC 2 cut(s) 14, 104
Eco31I GGTCTC 2 cut(s) 219, 302
Eco47I GGWCC 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 285, 314
FaeI CATG 2 cut(s) 164, 362
FaiI YATR 4 cut(s) 135, 162, 188, 360
FaqI GGGAC 1 cut(s) 228
FatI CATG 2 cut(s) 160, 358
FbaI TGATCA 1 cut(s) 33
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 56
GlaI GCGC 3 cut(s) 70, 82, 265
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 267
HhaI GCGC 3 cut(s) 71, 83, 266
Hin1II CATG 2 cut(s) 164, 362
Hin6I GCGC 3 cut(s) 69, 81, 264
HinP1I GCGC 3 cut(s) 69, 81, 264
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 4 cut(s) 197, 234, 341, 352
HpaI GTTAAC 1 cut(s) 61
HphI GGTGA 3 cut(s) 28, 212, 347
Hpy166II GTNNAC 3 cut(s) 61, 119, 281
Hpy188I TCNGA 3 cut(s) 114, 202, 346
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 3 cut(s) 61, 119, 281
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 114
HpyCH4IV ACGT 2 cut(s) 109, 144
HpyCH4V TGCA 4 cut(s) 160, 164, 170, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 109, 144
Hsp92II CATG 2 cut(s) 164, 362
HspAI GCGC 3 cut(s) 69, 81, 264
Ksp22I TGATCA 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 14, 33
LguI GCTCTTC 1 cut(s) 14
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 109, 144
MalI GATC 2 cut(s) 16, 35
MboI GATC 2 cut(s) 14, 33
MboII GAAGA 3 cut(s) 31, 91, 229
MhlI GDGCHC 2 cut(s) 261, 283
MluCI AATT 1 cut(s) 155
MlyI GAGTC 2 cut(s) 243, 346
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 8 cut(s) 100, 136, 142, 228, 256, 268, 298, 331
MseI TTAA 2 cut(s) 44, 60
MslI CAYNNNNRTG 2 cut(s) 165, 296
MspCI CTTAAG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 287, 316
MvaI CCWGG 2 cut(s) 287, 316
MvnI CGCG 2 cut(s) 69, 81
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 2 cut(s) 14, 33
NlaIII CATG 2 cut(s) 164, 362
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 2 cut(s) 107, 298
NspI RCATGY 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 296
PaeI GCATGC 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 197, 341
PleI GAGTC 2 cut(s) 242, 346
PpsI GAGTC 2 cut(s) 242, 346
PsiI TTATAA 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 285, 314
PspGI CCWGG 2 cut(s) 285, 314
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 2 cut(s) 176, 200
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 165, 296
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 44, 60
Sau3AI GATC 2 cut(s) 14, 33
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 243, 346
ScrFI CCNGG 2 cut(s) 287, 316
SduI GDGCHC 2 cut(s) 261, 283
SetI ASST 6 cut(s) 26, 44, 57, 112, 147, 178
Sfr274I CTCGAG 1 cut(s) 335
SinI GGWCC 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 165, 296
SmlI CTYRAG 2 cut(s) 43, 335
SmoI CTYRAG 2 cut(s) 43, 335
SphI GCATGC 1 cut(s) 164
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 87, 270, 312
SspI AATATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 285, 314
TaiI ACGT 2 cut(s) 112, 147
TaqI TCGA 2 cut(s) 17, 336
TaqII GACCGA 1 cut(s) 230
TasI AATT 1 cut(s) 155
TfiI GAWTC 2 cut(s) 197, 341
Tru1I TTAA 2 cut(s) 44, 60
Tru9I TTAA 2 cut(s) 44, 60
TscAI CASTG 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 242
XceI RCATGY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 335
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.