FvH4_7g33540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013170
Physical Location & Seq
Reverse (-)
23834436 .. 23837489
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33540.t1

Sequence Viewer

Length: 390 bp
ATGGCCGCCAATTCCAGTAGCCGACTGATCGCCAGCTTGGGGAAGCGAGCCGTCGTCAACCAGATCCGAGTCCGTCCCACCGAGGCGACTCGTCTCTCACCGGCTGCTCCTCTCGCTCTCAGGAGGGCTGCTCATTCCTCGGTGTATGACAAGAACCCTGATGAACACATTCGTCCTAGCTTTGTCCCGGACGATGTGATCTCACCTGAACCTGTGAAGTACTGGGCTCCAAACCCTCGAACTGGGGTATTTGGGCCTGAGACTGGGCATAATTCCACCCAAGCTGGGGAGTCTGGAGCTGTGAATGGTAGCGAGACGTCGGTGCTGGAGGAGAAGGCCTGGTACCGCCCTACCAACATCGAGGACTTGGAGAAGCCTCACCCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.02

Weight (kDa)

6.91

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3b PF22272 42 - 126 1.4e-31 Late embryogenesis abundant protein (LEA_3b subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03150 AT5G17165
fragaria_vesca FvH4_7g33540 FvH4_7g33540
malus_domestica MD01G1233000.v1.1 MD07G1305300.v1.1
prunus_persica Prupe.2G323400_v2.0.a1
pyrus_communis pycom01g24140
rosa_chinensis RchiOBHm_Chr1g0383761
rosa_laevigata RLG00000026098
rosa_multiflora Rmu_sc0012471.1_g000009
rosa_roxburghii Rroxscaffold_4G00277230
rosa_rugosa Rorug01G0442300
rosa_samantha Rh1AG467900 Rh1BG425500 Rh1CG438300 Rh1DG458300
rosa_wichuraiana Rw1G040450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 320
Acc65I GGTACC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 342
AciI CCGC 2 cut(s) 6, 346
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 2 cut(s) 221, 344
AfiI CCNNNNNNNGG 5 cut(s) 39, 242, 263, 285, 286
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 4 cut(s) 36, 180, 284, 299
AluI AGCT 4 cut(s) 36, 180, 284, 299
Alw26I GTCTC 3 cut(s) 98, 254, 308
AlwI GGATC 1 cut(s) 58
AoxI GGCC 3 cut(s) 3, 254, 336
ApeKI GCWGC 2 cut(s) 104, 128
Asp700I GAANNNNTTC 1 cut(s) 168
Asp718I GGTACC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 90, 195, 371
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbvI GCAGC 2 cut(s) 91, 115
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 3 cut(s) 98, 254, 308
BfaI CTAG 1 cut(s) 177
BisI GCNGC 3 cut(s) 6, 105, 129
BlsI GCNGC 3 cut(s) 7, 106, 130
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 2 cut(s) 188, 340
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 228, 344
BmrFI CCNGG 2 cut(s) 188, 340
BmrI ACTGGG 3 cut(s) 232, 252, 273
BmuI ACTGGG 3 cut(s) 232, 252, 273
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 2 cut(s) 315, 347
BpuMI CCSGG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 81, 138
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 242, 263, 285, 286
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 4 cut(s) 15, 227, 247, 268
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 81, 138
BseLI CCNNNNNNNGG 5 cut(s) 39, 242, 263, 285, 286
BseMII CTCAG 2 cut(s) 133, 249
BseNI ACTGG 4 cut(s) 15, 227, 247, 268
BseRI GAGGAG 2 cut(s) 99, 344
BseXI GCAGC 2 cut(s) 91, 115
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 3 cut(s) 5, 256, 338
BshNI GGYRCC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 101, 188
BslFI GGGAC 2 cut(s) 60, 170
BslI CCNNNNNNNGG 5 cut(s) 39, 242, 263, 285, 286
BsmAI GTCTC 3 cut(s) 98, 254, 308
BsmBI CGTCTC 2 cut(s) 98, 308
BsmFI GGGAC 2 cut(s) 60, 170
BsnI GGCC 3 cut(s) 5, 256, 338
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 3 cut(s) 27, 63, 198
BspACI CCGC 2 cut(s) 6, 346
BspANI GGCC 3 cut(s) 5, 256, 338
BspCNI CTCAG 2 cut(s) 132, 250
BspLI GGNNCC 2 cut(s) 228, 344
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 4 cut(s) 15, 227, 247, 268
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 81, 138
BssMI GATC 3 cut(s) 27, 63, 198
BssNI GRCGYC 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 34, 48
BstDEI CTNAG 2 cut(s) 119, 258
BstKTI GATC 3 cut(s) 30, 66, 201
BstMAI GTCTC 3 cut(s) 98, 254, 308
BstMBI GATC 3 cut(s) 27, 63, 198
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 186, 338
BstV1I GCAGC 2 cut(s) 91, 115
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 3 cut(s) 5, 256, 338
Cac8I GCNNGC 2 cut(s) 34, 48
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 220, 343
CviQI GTAC 2 cut(s) 220, 343
DdeI CTNAG 2 cut(s) 119, 258
DpnI GATC 3 cut(s) 29, 65, 200
DpnII GATC 3 cut(s) 27, 63, 198
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 229
Esp3I CGTCTC 2 cut(s) 98, 308
FaiI YATR 2 cut(s) 147, 270
FaqI GGGAC 2 cut(s) 60, 170
Fnu4HI GCNGC 3 cut(s) 6, 105, 129
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 6, 105, 129
FspBI CTAG 1 cut(s) 177
GluI GCNGC 3 cut(s) 6, 105, 129
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 2 cut(s) 315, 347
HaeIII GGCC 3 cut(s) 5, 256, 338
HapII CCGG 2 cut(s) 101, 188
Hin1I GRCGYC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 3 cut(s) 69, 88, 290
HpaII CCGG 2 cut(s) 101, 188
HphI GGTGA 3 cut(s) 90, 195, 371
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 121, 294
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 2 cut(s) 56, 322
HpyAV CCTTC 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 119, 258
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 317
KpnI GGTACC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 27, 63, 198
LmnI GCTCC 3 cut(s) 112, 232, 296
Lsp1109I GCAGC 2 cut(s) 91, 115
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 317
MalI GATC 3 cut(s) 29, 65, 200
MboI GATC 3 cut(s) 27, 63, 198
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 2 cut(s) 10, 271
MlyI GAGTC 3 cut(s) 78, 82, 299
MnlI CCTC 8 cut(s) 76, 117, 120, 148, 246, 322, 355, 387
MroXI GAANNNNTTC 1 cut(s) 168
MspI CCGG 2 cut(s) 101, 188
MspR9I CCNGG 2 cut(s) 188, 340
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 188
NdeII GATC 3 cut(s) 27, 63, 198
NlaIV GGNNCC 2 cut(s) 228, 344
PceI AGGCCT 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 3 cut(s) 7, 106, 130
PleI GAGTC 3 cut(s) 77, 82, 298
PpsI GAGTC 3 cut(s) 77, 82, 298
Psp6I CCWGG 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 228, 344
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 221, 344
RsaNI GTAC 2 cut(s) 220, 343
SatI GCNGC 3 cut(s) 6, 105, 129
Sau3AI GATC 3 cut(s) 27, 63, 198
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 3 cut(s) 78, 82, 299
ScrFI CCNGG 2 cut(s) 188, 340
SduI GDGCHC 1 cut(s) 229
SetI ASST 7 cut(s) 38, 182, 208, 214, 286, 301, 320
Sse9I AATT 2 cut(s) 10, 271
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 2 cut(s) 6, 346
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 186, 338
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 238, 360
TasI AATT 2 cut(s) 10, 271
TatI WGTACW 1 cut(s) 219
TauI GCSGC 1 cut(s) 8
TseI GCWGC 2 cut(s) 104, 128
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 177
ZraI GACGTC 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.