Rh1BG425500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013170
Physical Location & Seq
Reverse (-)
54392850 .. 54396175
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG425500.1

Sequence Viewer

Length: 393 bp
ATGGCAGCTAATTCCAGCAGCCGAGTGATCGCCAGCGTGGGGAAGCGAGTCGTCGTCAGCCAGATCCGAGTCCGTCCAACCACCGACTCAACTCGCCTCTCACTCGCTGCTCCTCTCGCTCTCAGGAGGGCTGCTCACACCTCAGTTTATGACAAGAACCCTGATGAACAAATTCGCCCTAGCTTTGTCCCAGACGATGTGATCCCAGCTGAACCCGAGAAGTACTGGGCTCCAAACCCTCGAACTGGGGTATTTGGGCCTGAGACTGCGCATAATTCCACCCCAGCTGAAGAGTCTGGAGCTGTGAATGGTAAGGAGACATCGGTGCTGGAGGAGAAAGCCTGGTACCGTCCTACCAACATCGAGGACTTGGAGAAGCCTCACGTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.23

Weight (kDa)

6.3

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3b PF22272 43 - 127 1.2e-32 Late embryogenesis abundant protein (LEA_3b subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03150 AT5G17165
fragaria_vesca FvH4_7g33540 FvH4_7g33540
malus_domestica MD01G1233000.v1.1 MD07G1305300.v1.1
prunus_persica Prupe.2G323400_v2.0.a1
pyrus_communis pycom01g24140
rosa_chinensis RchiOBHm_Chr1g0383761
rosa_laevigata RLG00000026098
rosa_multiflora Rmu_sc0012471.1_g000009
rosa_roxburghii Rroxscaffold_4G00277230
rosa_rugosa Rorug01G0442300
rosa_samantha Rh1AG467900 Rh1BG425500 Rh1CG438300 Rh1DG458300
rosa_wichuraiana Rw1G040450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 345
AclWI GGATC 2 cut(s) 58, 196
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 309
AcvI CACGTG 1 cut(s) 385
AfaI GTAC 2 cut(s) 224, 347
AfiI CCNNNNNNNGG 2 cut(s) 39, 245
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 5 cut(s) 8, 183, 209, 287, 302
AluI AGCT 5 cut(s) 8, 183, 209, 287, 302
Alw26I GTCTC 2 cut(s) 257, 311
AlwI GGATC 2 cut(s) 58, 196
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 4 cut(s) 5, 18, 107, 131
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 171
Asp718I GGTACC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 215
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 232
BbrPI CACGTG 1 cut(s) 385
BbvI GCAGC 4 cut(s) 17, 30, 94, 118
BciT130I CCWGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 257, 311
BfaI CTAG 1 cut(s) 180
BisI GCNGC 4 cut(s) 6, 19, 108, 132
BlsI GCNGC 4 cut(s) 7, 20, 109, 133
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 231, 347
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 2 cut(s) 235, 255
BmuI ACTGGG 2 cut(s) 235, 255
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpmI CTGGAG 2 cut(s) 318, 350
BsaAI YACGTR 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 245
Bse1I ACTGG 2 cut(s) 230, 250
BseBI CCWGG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 39, 245
BseMII CTCAG 3 cut(s) 136, 156, 252
BseNI ACTGG 2 cut(s) 230, 250
BseRI GAGGAG 2 cut(s) 102, 347
BseXI GCAGC 4 cut(s) 17, 30, 94, 118
BseYI CCCAGC 2 cut(s) 205, 283
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 39, 245
BsmAI GTCTC 2 cut(s) 257, 311
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 3 cut(s) 27, 63, 201
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 3 cut(s) 135, 155, 253
BspLI GGNNCC 2 cut(s) 231, 347
BspPI GGATC 2 cut(s) 58, 196
BspT107I GGYRCC 1 cut(s) 345
BsrI ACTGG 2 cut(s) 230, 250
BssMI GATC 3 cut(s) 27, 63, 201
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 122, 142, 261
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 3 cut(s) 30, 66, 204
BstMAI GTCTC 2 cut(s) 257, 311
BstMBI GATC 3 cut(s) 27, 63, 201
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstV1I GCAGC 4 cut(s) 17, 30, 94, 118
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 223, 346
CviQI GTAC 2 cut(s) 223, 346
DdeI CTNAG 3 cut(s) 122, 142, 261
DpnI GATC 3 cut(s) 29, 65, 203
DpnII GATC 3 cut(s) 27, 63, 201
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 309
Eco72I CACGTG 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 232
FaiI YATR 2 cut(s) 150, 273
FaqI GGGAC 1 cut(s) 173
Fnu4HI GCNGC 4 cut(s) 6, 19, 108, 132
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 4 cut(s) 6, 19, 108, 132
FspBI CTAG 1 cut(s) 180
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 1 cut(s) 270
GluI GCNGC 4 cut(s) 6, 19, 108, 132
GsaI CCCAGC 2 cut(s) 209, 287
GsuI CTGGAG 2 cut(s) 318, 350
HaeIII GGCC 1 cut(s) 259
HhaI GCGC 1 cut(s) 271
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 4 cut(s) 48, 69, 86, 293
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 124, 297
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 122, 142, 261
HpySE526I ACGT 1 cut(s) 384
HspAI GCGC 1 cut(s) 269
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 27, 63, 201
LmnI GCTCC 3 cut(s) 115, 235, 299
Lsp1109I GCAGC 4 cut(s) 17, 30, 94, 118
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 385
MalI GATC 3 cut(s) 29, 65, 203
MboI GATC 3 cut(s) 27, 63, 201
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 3 cut(s) 10, 171, 274
MlyI GAGTC 4 cut(s) 57, 78, 80, 302
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 8 cut(s) 107, 120, 123, 151, 249, 325, 358, 390
MroXI GAANNNNTTC 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 209, 287
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 3 cut(s) 27, 63, 201
NlaIV GGNNCC 2 cut(s) 231, 347
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 385
NsbI TGCGCA 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 171
PkrI GCNGC 4 cut(s) 7, 20, 109, 133
PleI GAGTC 4 cut(s) 56, 77, 80, 301
PmaCI CACGTG 1 cut(s) 385
PmlI CACGTG 1 cut(s) 385
PpsI GAGTC 4 cut(s) 56, 77, 80, 301
Ppu21I YACGTR 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 341
PspCI CACGTG 1 cut(s) 385
PspFI CCCAGC 2 cut(s) 205, 283
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 231, 347
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 2 cut(s) 209, 287
RsaI GTAC 2 cut(s) 224, 347
RsaNI GTAC 2 cut(s) 223, 346
SatI GCNGC 4 cut(s) 6, 19, 108, 132
Sau3AI GATC 3 cut(s) 27, 63, 201
Sau96I GGNCC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 4 cut(s) 57, 78, 80, 302
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 232
SetI ASST 7 cut(s) 10, 143, 185, 211, 289, 304, 387
Sse9I AATT 3 cut(s) 10, 171, 274
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 387
TaqI TCGA 2 cut(s) 241, 363
TasI AATT 3 cut(s) 10, 171, 274
TatI WGTACW 1 cut(s) 222
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 4 cut(s) 5, 18, 107, 131
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 62
XapI RAATTY 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.