pycom01g24140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013170
Physical Location & Seq
Reverse (-)
21172771 .. 21175130
2360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24140.1

Sequence Viewer

Length: 381 bp
ATGGCCGCCAATTCGAGCAGTCGAGGTATCACGAGCTTGGGGAAGCGACTTATCAACGAGATCCGAGCGCGCGATTCAGCTCAGCTCTCTGCTCTCACTCTCAGGAGGGCTGCTCACACCTCGACCTATGACAAGAACCCAGAGGAACAAACTCAAGCCAGCTTTGTTCCAGATGATGTGATCCCGCCCCAACCGGACAAGTACTGGGCTCCCCACCCAGACACGGGGGTTTTCGGGCCTGAAGCTGAACACACATCTTCTGCGGGCAGGGAGGACGGCTCCTCCCCGGGCGATAGTGGGGAGGGATCCTCGGTGCTGGAGCAAAAGGCGTGGTTTCGCCCTACCAGCATCGAGGACTTGGAGAAGCCTCACCTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.64

Weight (kDa)

5.12

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3b PF22272 36 - 123 1.3e-35 Late embryogenesis abundant protein (LEA_3b subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03150 AT5G17165
fragaria_vesca FvH4_7g33540 FvH4_7g33540
malus_domestica MD01G1233000.v1.1 MD07G1305300.v1.1
prunus_persica Prupe.2G323400_v2.0.a1
pyrus_communis pycom01g24140
rosa_chinensis RchiOBHm_Chr1g0383761
rosa_laevigata RLG00000026098
rosa_multiflora Rmu_sc0012471.1_g000009
rosa_roxburghii Rroxscaffold_4G00277230
rosa_rugosa Rorug01G0442300
rosa_samantha Rh1AG467900 Rh1BG425500 Rh1CG438300 Rh1DG458300
rosa_wichuraiana Rw1G040450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 70, 72
AciI CCGC 3 cut(s) 6, 185, 263
AclWI GGATC 4 cut(s) 55, 175, 300, 313
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 223, 224
AluBI AGCT 5 cut(s) 36, 80, 85, 162, 245
AluI AGCT 5 cut(s) 36, 80, 85, 162, 245
AlwI GGATC 4 cut(s) 55, 175, 300, 313
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 2 cut(s) 3, 236
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 70, 72
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 2 cut(s) 287, 288
AsuHPI GGTGA 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 286
BamHI GGATCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 1 cut(s) 31
BbvI GCAGC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 2 cut(s) 287, 288
BisI GCNGC 2 cut(s) 6, 111
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 2 cut(s) 7, 112
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 287, 288
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 3 cut(s) 210, 280, 307
BmrFI CCNGG 2 cut(s) 287, 288
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 214
BplI GAGNNNNNCTC 6 cut(s) 97, 129, 263, 295, 293, 325
BpmI CTGGAG 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 287, 288
BsaJI CCNNGG 3 cut(s) 285, 286, 309
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 224
Bse1I ACTGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 285, 286, 309
BseLI CCNNNNNNNGG 2 cut(s) 223, 224
BseMII CTCAG 2 cut(s) 95, 115
BseNI ACTGG 1 cut(s) 209
BsePI GCGCGC 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 70, 72
BshFI GGCC 2 cut(s) 5, 238
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 194, 287
BslI CCNNNNNNNGG 2 cut(s) 223, 224
BsnI GGCC 2 cut(s) 5, 238
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 60, 180, 305
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 3 cut(s) 6, 185, 263
BspANI GGCC 2 cut(s) 5, 238
BspCNI CTCAG 2 cut(s) 94, 114
BspFNI CGCG 2 cut(s) 70, 72
BspLI GGNNCC 3 cut(s) 210, 280, 307
BspPI GGATC 4 cut(s) 55, 175, 300, 313
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 285, 286, 309
BssHII GCGCGC 1 cut(s) 68
BssMI GATC 3 cut(s) 60, 180, 305
BssSI CACGAG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 70, 160, 265
BstDEI CTNAG 2 cut(s) 81, 101
BstFNI CGCG 2 cut(s) 70, 72
BstHHI GCGC 2 cut(s) 70, 72
BstKTI GATC 3 cut(s) 63, 183, 308
BstMBI GATC 3 cut(s) 60, 180, 305
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 285, 286
BstUI CGCG 2 cut(s) 70, 72
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 60, 305
BstYI RGATCY 2 cut(s) 60, 305
BsuRI GGCC 2 cut(s) 5, 238
Cac8I GCNNGC 3 cut(s) 70, 160, 265
CfoI GCGC 2 cut(s) 70, 72
Cfr13I GGNCC 1 cut(s) 236
Cfr9I CCCGGG 1 cut(s) 286
Csp6I GTAC 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 81, 101
DpnI GATC 3 cut(s) 62, 182, 307
DpnII GATC 3 cut(s) 60, 180, 305
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 211
FaiI YATR 1 cut(s) 129
FauI CCCGC 2 cut(s) 192, 256
Fnu4HI GCNGC 2 cut(s) 6, 111
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 6, 111
GlaI GCGC 2 cut(s) 69, 71
GluI GCNGC 2 cut(s) 6, 111
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 2 cut(s) 5, 238
HapII CCGG 2 cut(s) 194, 287
HhaI GCGC 2 cut(s) 70, 72
Hin6I GCGC 2 cut(s) 68, 70
HinP1I GCGC 2 cut(s) 68, 70
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 194, 287
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 3 cut(s) 31, 103, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 2 cut(s) 81, 101
HspAI GCGC 2 cut(s) 68, 70
Kzo9I GATC 3 cut(s) 60, 180, 305
LmnI GCTCC 3 cut(s) 214, 284, 319
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 357
MalI GATC 3 cut(s) 62, 182, 307
MboI GATC 3 cut(s) 60, 180, 305
MboII GAAGA 1 cut(s) 249
MflI RGATCY 2 cut(s) 60, 305
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 10
MspI CCGG 2 cut(s) 194, 287
MspR9I CCNGG 2 cut(s) 287, 288
MvnI CGCG 2 cut(s) 70, 72
MwoI GCNNNNNNNGC 1 cut(s) 345
NciI CCSGG 2 cut(s) 287, 288
NdeII GATC 3 cut(s) 60, 180, 305
NlaIV GGNNCC 3 cut(s) 210, 280, 307
PauI GCGCGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 7, 112
PspN4I GGNNCC 3 cut(s) 210, 280, 307
PspPI GGNCC 1 cut(s) 236
PsuI RGATCY 2 cut(s) 60, 305
PteI GCGCGC 1 cut(s) 68
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 2 cut(s) 6, 111
Sau3AI GATC 3 cut(s) 60, 180, 305
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 287, 288
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 28, 38, 82, 87, 122, 128, 164, 247, 375
SfaNI GCATC 1 cut(s) 357
SmaI CCCGGG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 10
SsiI CCGC 3 cut(s) 6, 185, 263
StyD4I CCNGG 2 cut(s) 285, 286
TaqI TCGA 4 cut(s) 14, 22, 122, 351
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 74
TseI GCWGC 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 286
XmaI CCCGGG 1 cut(s) 286
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.