AT5G17165

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013170
Physical Location & Seq
Reverse (-)
5643118 .. 5647807
4690 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17165.1

Sequence Viewer

Length: 351 bp
ATGGCAGCCAAATCGAAGAACATTCAGGTGGTCGGGAGGCACATAGTCAACGGCGTTCGTTCACGCGCCGTCGCATATGGTCTCTTCACGTCTCGGAATGATCACACGTCTGCGTATGATAAGAACGTCGAGGAAGAATTGCAACCGAGTCAAGTGCCTGATGAAATGATAAAGCCTGACTCTGACAAATATTGGTCTCCTCATCCCCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCAACGCAAAGGACGAATTTCGCGGCGGTCAGGAGGACTCAGTGATGGAGGAGAAAGCCTGGTTCCGTCCAACAAGTCTCGAAGATTTGGACAAGACTCACCATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.01

Weight (kDa)

5.68

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3b PF22272 32 - 113 1.2e-31 Late embryogenesis abundant protein (LEA_3b subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03150 AT5G17165
fragaria_vesca FvH4_7g33540 FvH4_7g33540
malus_domestica MD01G1233000.v1.1 MD07G1305300.v1.1
prunus_persica Prupe.2G323400_v2.0.a1
pyrus_communis pycom01g24140
rosa_chinensis RchiOBHm_Chr1g0383761
rosa_laevigata RLG00000026098
rosa_multiflora Rmu_sc0012471.1_g000009
rosa_roxburghii Rroxscaffold_4G00277230
rosa_rugosa Rorug01G0442300
rosa_samantha Rh1AG467900 Rh1BG425500 Rh1CG438300 Rh1DG458300
rosa_wichuraiana Rw1G040450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 66, 264
AciI CCGC 2 cut(s) 264, 267
AcsI RAATTY 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 212
AjiI CACGTC 2 cut(s) 90, 108
AjnI CCWGG 1 cut(s) 299
Alw26I GTCTC 4 cut(s) 86, 96, 201, 323
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 1 cut(s) 328
AsiGI ACCGGT 1 cut(s) 212
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 53, 67
BcgI CGANNNNNNTGC 3 cut(s) 28, 136, 170
BciT130I CCWGG 1 cut(s) 301
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 4 cut(s) 86, 96, 201, 323
BisI GCNGC 2 cut(s) 6, 265
BlsI GCNGC 2 cut(s) 7, 266
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 224
BmgBI CACGTC 2 cut(s) 90, 108
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 301
BsaI GGTCTC 2 cut(s) 86, 201
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 212
BseBI CCWGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 4 cut(s) 189, 223, 226, 305
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 2 cut(s) 66, 264
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 4 cut(s) 86, 96, 201, 323
BsmBI CGTCTC 1 cut(s) 96
Bso31I GGTCTC 2 cut(s) 86, 201
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 264, 267
BspCNI CTCAG 1 cut(s) 293
BspFNI CGCG 2 cut(s) 66, 264
BspLI GGNNCC 1 cut(s) 305
BspTNI GGTCTC 2 cut(s) 86, 201
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssMI GATC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 2 cut(s) 66, 264
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 4 cut(s) 86, 96, 201, 323
BstMBI GATC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstUI CGCG 2 cut(s) 66, 264
BstV1I GCAGC 1 cut(s) 17
BtrI CACGTC 2 cut(s) 90, 108
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 288
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 224
CspAI ACCGGT 1 cut(s) 212
CviJI RGCY 3 cut(s) 8, 175, 299
CviKI_1 RGCY 3 cut(s) 8, 175, 299
DdeI CTNAG 1 cut(s) 280
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco31I GGTCTC 2 cut(s) 86, 201
Eco47I GGWCC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 96
FaiI YATR 4 cut(s) 44, 76, 78, 117
FauNDI CATATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 6, 265
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 6, 265
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 6, 265
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 4 cut(s) 148, 179, 278, 337
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 49, 62
Hpy188I TCNGA 2 cut(s) 96, 184
Hpy188III TCNNGA 3 cut(s) 34, 272, 320
Hpy8I GTNNAC 2 cut(s) 49, 62
Hpy99I CGWCG 2 cut(s) 74, 131
HpyAV CCTTC 1 cut(s) 237
HpyCH4IV ACGT 3 cut(s) 89, 107, 126
HpyCH4V TGCA 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 280
HpySE526I ACGT 3 cut(s) 89, 107, 126
HspAI GCGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 11, 171, 189, 226, 257, 286, 313
Lsp1109I GCAGC 1 cut(s) 17
MaeII ACGT 3 cut(s) 89, 107, 126
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 28, 76, 146, 335
MluCI AATT 2 cut(s) 137, 257
MlyI GAGTC 4 cut(s) 157, 173, 272, 331
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 8 cut(s) 30, 124, 210, 241, 244, 247, 268, 283
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 2 cut(s) 66, 264
NdeI CATATG 1 cut(s) 76
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 7, 266
PleI GAGTC 4 cut(s) 156, 173, 272, 331
PpsI GAGTC 4 cut(s) 156, 173, 272, 331
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 2 cut(s) 6, 265
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 4 cut(s) 157, 173, 272, 331
ScrFI CCNGG 1 cut(s) 301
SetI ASST 5 cut(s) 30, 92, 110, 129, 229
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 137, 257
SsiI CCGC 2 cut(s) 264, 267
SspI AATATT 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 299
TaiI ACGT 3 cut(s) 92, 110, 129
TaqI TCGA 4 cut(s) 14, 129, 239, 321
TasI AATT 2 cut(s) 137, 257
TauI GCSGC 1 cut(s) 267
TscAI CASTG 1 cut(s) 288
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.