Rorug01G0442300

Domain present in PSD-95, Dlg, and ZO-1/2.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004389
Physical Location & Seq
Reverse (-)
53965092 .. 53968260
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0442300.1

Sequence Viewer

Length: 696 bp
ATGCCGGCCTTAGGAGTACCATCGACTCCATTCACGTTTGTAGTGCACGCGCTCGGAGTCGCGGTTTTGATCCTGGTTCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCATGGGAAGCCACCGACAAGAGCCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGCTTAGTTTTCCTTGGAGGAGAAGCCATTATCAGTTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTTGGTATAATCGGCATTTATACTGCATTCAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTGCAGGGCTGAGAAGTGACTCAGTTCCATGGCATGTGCTTTTTGGGCTTCTCGTGTACATTTTAGTCGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTCAGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.42

Weight (kDa)

6.43

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 50 - 182 5.9e-47 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 50, 62
AciI CCGC 2 cut(s) 62, 105
AclWI GGATC 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 2 cut(s) 18, 494
AfiI CCNNNNNNNGG 2 cut(s) 11, 79
AgsI TTSAA 2 cut(s) 145, 310
AjnI CCWGG 3 cut(s) 72, 252, 356
AluBI AGCT 3 cut(s) 538, 555, 681
AluI AGCT 3 cut(s) 538, 555, 681
Alw21I GWGCWC 3 cut(s) 48, 252, 557
Alw26I GTCTC 1 cut(s) 317
Alw44I GTGCAC 2 cut(s) 44, 248
AlwI GGATC 1 cut(s) 64
AoxI GGCC 2 cut(s) 6, 627
ApaLI GTGCAC 2 cut(s) 44, 248
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 87, 627, 659
AvaII GGWCC 2 cut(s) 87, 659
AxyI CCTNAGG 1 cut(s) 10
BaeGI GKGCMC 2 cut(s) 48, 252
BanII GRGCYC 1 cut(s) 557
BauI CACGAG 2 cut(s) 488, 617
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 3 cut(s) 48, 252, 557
BccI CCATC 2 cut(s) 28, 159
BciT130I CCWGG 3 cut(s) 74, 254, 358
BcoDI GTCTC 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 343, 663
Bme1390I CCNGG 3 cut(s) 74, 254, 358
Bme18I GGWCC 2 cut(s) 87, 659
BmgT120I GGNCC 3 cut(s) 87, 627, 659
BmiI GGNNCC 2 cut(s) 628, 660
BmrFI CCNGG 3 cut(s) 74, 254, 358
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 184, 464, 519
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 79
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 3 cut(s) 74, 254, 358
BseDI CCNNGG 3 cut(s) 184, 464, 519
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 11, 79
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 4 cut(s) 437, 471, 570, 668
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 204
BseSI GKGCMC 2 cut(s) 48, 252
BsgI GTGCAG 2 cut(s) 335, 459
Bsh1236I CGCG 2 cut(s) 50, 62
BshFI GGCC 2 cut(s) 8, 629
BsiHKAI GWGCWC 3 cut(s) 48, 252, 557
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 11, 79
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 2 cut(s) 8, 629
Bsp1286I GDGCHC 3 cut(s) 48, 252, 557
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 2 cut(s) 62, 105
BspANI GGCC 2 cut(s) 8, 629
BspCNI CTCAG 4 cut(s) 438, 470, 569, 667
BspFNI CGCG 2 cut(s) 50, 62
BspLI GGNNCC 2 cut(s) 628, 660
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 184, 464, 519
BssMI GATC 1 cut(s) 69
BssSI CACGAG 2 cut(s) 488, 617
BssT1I CCWWGG 3 cut(s) 184, 464, 519
Bst2BI CACGAG 2 cut(s) 488, 617
Bst2UI CCWGG 3 cut(s) 74, 254, 358
Bst4CI ACNGT 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 6, 48
BstDEI CTNAG 7 cut(s) 10, 175, 446, 457, 556, 654, 685
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 2 cut(s) 50, 62
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 119, 481
BstNI CCWGG 3 cut(s) 74, 254, 358
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 3 cut(s) 72, 252, 356
BstSFI CTRYAG 2 cut(s) 343, 663
BstSLI GKGCMC 2 cut(s) 48, 252
BstUI CGCG 2 cut(s) 50, 62
BstV2I GAAGAC 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 10
BsuRI GGCC 2 cut(s) 8, 629
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 401, 600
Cac8I GCNNGC 2 cut(s) 6, 48
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 3 cut(s) 87, 627, 659
CsiI ACCWGGT 1 cut(s) 252
Csp6I GTAC 2 cut(s) 17, 493
CviAII CATG 5 cut(s) 114, 163, 263, 465, 470
CviQI GTAC 2 cut(s) 17, 493
DdeI CTNAG 7 cut(s) 10, 175, 446, 457, 556, 654, 685
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 184, 464, 519
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 87, 659
Eco53kI GAGCTC 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 555
EcoO109I RGGNCCY 2 cut(s) 627, 659
EcoRII CCWGG 3 cut(s) 72, 252, 356
EcoT14I CCWWGG 3 cut(s) 184, 464, 519
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 184, 464, 519
FaeI CATG 5 cut(s) 117, 166, 266, 468, 473
FatI CATG 5 cut(s) 113, 162, 262, 464, 469
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 557
GlaI GCGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 8, 629
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 52
Hin1II CATG 5 cut(s) 117, 166, 266, 468, 473
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 4 cut(s) 25, 57, 455, 561
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 4 cut(s) 46, 250, 493, 595
Hpy188I TCNGA 2 cut(s) 56, 688
Hpy188III TCNNGA 2 cut(s) 310, 558
Hpy8I GTNNAC 4 cut(s) 46, 250, 493, 595
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 46, 250, 305, 352, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 481
HpyF3I CTNAG 7 cut(s) 10, 175, 446, 457, 556, 654, 685
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 5 cut(s) 117, 166, 266, 468, 473
HspAI GCGC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 69
MabI ACCWGGT 1 cut(s) 252
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 452, 610
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 6 cut(s) 133, 250, 251, 412, 680, 683
MhlI GDGCHC 3 cut(s) 48, 252, 557
MluCI AATT 1 cut(s) 242
MlyI GAGTC 4 cut(s) 19, 66, 449, 570
MnlI CCTC 6 cut(s) 146, 158, 182, 219, 392, 574
MroNI GCCGGC 1 cut(s) 4
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 3 cut(s) 74, 254, 358
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 3 cut(s) 74, 254, 358
MvnI CGCG 2 cut(s) 50, 62
MwoI GCNNNNNNNGC 2 cut(s) 119, 481
NaeI GCCGGC 1 cut(s) 6
NcoI CCATGG 1 cut(s) 464
NdeII GATC 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 5 cut(s) 117, 166, 266, 468, 473
NlaIV GGNNCC 2 cut(s) 628, 660
NmuCI GTSAC 1 cut(s) 452
NspI RCATGY 1 cut(s) 473
PctI GAATGC 1 cut(s) 305
PdiI GCCGGC 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 4 cut(s) 19, 65, 449, 569
PpsI GAGTC 4 cut(s) 19, 65, 449, 569
PpuMI RGGWCCY 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 557
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 3 cut(s) 72, 252, 356
PspGI CCWGG 3 cut(s) 72, 252, 356
PspN4I GGNNCC 2 cut(s) 628, 660
PspPI GGNCC 3 cut(s) 87, 627, 659
PspPPI RGGWCCY 1 cut(s) 659
RsaI GTAC 2 cut(s) 18, 494
RsaNI GTAC 2 cut(s) 17, 493
SacI GAGCTC 1 cut(s) 557
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 3 cut(s) 87, 627, 659
SchI GAGTC 4 cut(s) 19, 66, 449, 570
ScrFI CCNGG 3 cut(s) 74, 254, 358
SduI GDGCHC 3 cut(s) 48, 252, 557
SetI ASST 8 cut(s) 38, 150, 219, 255, 521, 540, 557, 683
SexAI ACCWGGT 1 cut(s) 252
SfcI CTRYAG 2 cut(s) 343, 663
SinI GGWCC 2 cut(s) 87, 659
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 1 cut(s) 242
SsiI CCGC 2 cut(s) 62, 105
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 3 cut(s) 72, 252, 356
StyI CCWWGG 3 cut(s) 184, 464, 519
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 23, 564
TaqII GACCGA 1 cut(s) 634
TasI AATT 1 cut(s) 242
TatI WGTACW 1 cut(s) 492
TscAI CASTG 2 cut(s) 401, 607
TseFI GTSAC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 2 cut(s) 401, 607
VneI GTGCAC 2 cut(s) 44, 248
VpaK11BI GGWCC 2 cut(s) 87, 659
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.