Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

21176770 .. 21177841

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCACAGGCGGTGCTTGCAGCTGCTTCCTCCTCCTCCTCTTGCTCCGCCGCATTCAAAAGGCACCACTCGACAAGAACTCCACAGCTCACAACTCCAAGGCAATTGGCACCAAATCAGTGCCAGAAAACTAGCTTCCAAGGATTGTCACTCGGAGAAGCCAAAAAGGGAGTGTTTGATTCTTTGCTGGTAGCTGCTGGGAATAACAGGAGTGGTTTAGGCAACTACAACGTAGGGAAAGGAAGAGGGCTTAGGGTTACAGCAAGAACTACAGGGGCTTCCAAGTCGATTGAGGCTGAGGTGGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCCGGAGTTAACCCCAATATCTTCCATCACAGCTGTGGATGGAGGTGGGAATGCAGCAAGGGCAGGGCTCAAGGCAGGGGACCAAGTCCTCTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.18

Weight (kDa)

10.54

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	63, 109
AciI	CCGC	3 cut(s)	11, 48, 51
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	58
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	5 cut(s)	23, 88, 135, 194, 369
AluI	AGCT	5 cut(s)	23, 88, 135, 194, 369
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	20, 23, 194, 390
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	416
BanI	GGYRCC	2 cut(s)	63, 109
BanII	GRGCYC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	4 cut(s)	10, 32, 181, 402
BccI	CCATC	2 cut(s)	369, 369
BcnI	CCSGG	1 cut(s)	339
BfaI	CTAG	2 cut(s)	132, 433
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	5 cut(s)	21, 24, 51, 195, 391
BlsI	GCNGC	5 cut(s)	22, 25, 52, 196, 392
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	3 cut(s)	65, 111, 417
BmrFI	CCNGG	1 cut(s)	339
Bpu10I	CCTNAGC	2 cut(s)	251, 297
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	98, 139
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	98, 139
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	3 cut(s)	22, 25, 28
BseXI	GCAGC	4 cut(s)	10, 32, 181, 402
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	2 cut(s)	63, 109
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	2 cut(s)	53, 392
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	406
BspACI	CCGC	3 cut(s)	11, 48, 51
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	65, 111, 417
BspT107I	GGYRCC	2 cut(s)	63, 109
BssECI	CCNNGG	2 cut(s)	98, 139
BssT1I	CCWWGG	2 cut(s)	98, 139
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	251, 297
BstF5I	GGATG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 396
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	10, 32, 181, 402
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	416
DdeI	CTNAG	2 cut(s)	251, 297
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	98, 139
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	98, 139
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	98, 139
FaqI	GGGAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	21, 24, 51, 195, 391
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	5 cut(s)	21, 24, 51, 195, 391
FspBI	CTAG	2 cut(s)	132, 433
GluI	GCNGC	5 cut(s)	21, 24, 51, 195, 391
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	179
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	304, 346
Hpy188I	TCNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	304, 346
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	20, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 396
HpyF3I	CTNAG	2 cut(s)	251, 297
HpySE526I	ACGT	1 cut(s)	231
KspAI	GTTAAC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	8 cut(s)	137, 173, 183, 193, 258, 352, 385, 397
Lsp1109I	GCAGC	4 cut(s)	10, 32, 181, 402
MaeI	CTAG	2 cut(s)	132, 433
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	3, 147, 256
MboII	GAAGA	2 cut(s)	255, 349
MfeI	CAATTG	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	104
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	23, 369
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	104
Mva1269I	GAATGC	2 cut(s)	53, 392
MwoI	GCNNNNNNNGC	2 cut(s)	17, 396
NciI	CCSGG	1 cut(s)	339
NlaIV	GGNNCC	3 cut(s)	65, 111, 417
NmuCI	GTSAC	2 cut(s)	3, 147
OliI	CACNNNNGTG	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	318
PctI	GAATGC	2 cut(s)	53, 392
PfeI	GAWTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	420
PkrI	GCNGC	5 cut(s)	22, 25, 52, 196, 392
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	65, 111, 417
PspPI	GGNCC	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	420
PvuII	CAGCTG	2 cut(s)	23, 369
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	5 cut(s)	21, 24, 51, 195, 391
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	8 cut(s)	25, 90, 137, 196, 234, 303, 371, 383
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	3 cut(s)	11, 48, 51
SspMI	CTAG	2 cut(s)	132, 433
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	98, 139
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	71, 287
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	3, 147
TseI	GCWGC	4 cut(s)	20, 23, 194, 390
Tsp45I	GTSAC	2 cut(s)	3, 147
TspRI	CASTG	1 cut(s)	125
Tth111I	GACNNNGTC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XspI	CTAG	2 cut(s)	132, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.