Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019101.1

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

1458 .. 4440

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggtggaggcagtaatttgtctcaggttgttgacattgggcttgatctgggggccatcggcggtggaggcgggacataagctggcatgtatggcggcggcggcttgcttgcttgctttttcatctaggttttgccctaggtgttatgattggggttcttcctcttcttcttgctctgccactttcaacaggcaccagtacttcatcaaaactccacagatcactaccccaaaatcattggcaccactacaatgtcagaagacgagcttccaagggttgtcacttggagaagccaaaaggggtgtatctgaatccttcgtagctgagaatgttagtagtactactgtaagaagaggtcggctacttggcatagttgcaaggacagctggggctgcaaagacaattgaggctgaggttgacaagccattaggcctcactttgggtcaaaagcctggaggtggtgttaccatcactgctgtagaaggaggtgggaatgcggcaaaggcagggctcaaagcgggggatcaggtgatctacactagcagcttcttcggagatgaattatggcccgcagataagcttggatttactaaaactgccatcaacgccaagcccgacaacgtttacttcgtcgttagcagaggtggtgctgaagtagacgttaaacggctaccaaagcgtccagctcctcctcgctttggaaggaaactgacggagtctcaaaaggctagagctactcacatatgccttgactgtggattcatatacacattatcaaaaccttttgatgagcagccggaatcgtacgtatgccctcagtgcagagcaccgaagaagaggtttgcaggatatgatgtcaacacagggaaacctatcggtggcggtttgcctcctattggagtcattattggcctcgtcgctggtgttgccggtgtgggagcattgcttgtatatggtcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

33.86

Weight (kDa)

9.42

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	192, 241
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	9 cut(s)	62, 71, 95, 98, 101, 497, 518, 570, 882
AclI	AACGTT	1 cut(s)	621
AclWI	GGATC	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	3 cut(s)	200, 340, 806
AfiI	CCNNNNNNNGG	5 cut(s)	439, 458, 698, 878, 896
AgsI	TTSAA	2 cut(s)	187, 962
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	8 cut(s)	82, 267, 323, 386, 546, 580, 686, 734
AluI	AGCT	8 cut(s)	82, 267, 323, 386, 546, 580, 686, 734
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	2 cut(s)	26, 723
AlwI	GGATC	1 cut(s)	531
AoxI	GGCC	4 cut(s)	53, 430, 566, 910
ApeKI	GCWGC	3 cut(s)	392, 543, 793
AspA2I	CCTAGG	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	53, 567
AsuHPI	GGTGA	1 cut(s)	541
AvrII	CCTAGG	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	192, 241
BanII	GRGCYC	1 cut(s)	513
BarI	GAAGNNNNNNTAC	1 cut(s)	942
BbsI	GAAGAC	2 cut(s)	266, 950
Bbv12I	GWGCWC	1 cut(s)	829
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	379, 555, 805
BccI	CCATC	3 cut(s)	64, 476, 608
BceAI	ACGGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	26, 723
BfaI	CTAG	4 cut(s)	126, 138, 540, 729
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	7 cut(s)	96, 99, 102, 393, 498, 544, 794
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	7 cut(s)	97, 100, 103, 394, 499, 545, 795
BmcAI	AGTACT	2 cut(s)	200, 340
Bme1390I	CCNGG	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	53, 567
BmiI	GGNNCC	3 cut(s)	54, 194, 243
BmrFI	CCNGG	1 cut(s)	453
BpiI	GAAGAC	2 cut(s)	266, 950
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	808
BsaJI	CCNNGG	2 cut(s)	137, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	5 cut(s)	439, 458, 698, 878, 896
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	941
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	137, 271
BseLI	CCNNNNNNNGG	5 cut(s)	439, 458, 698, 878, 896
BseMI	GCAATG	1 cut(s)	941
BseMII	CTCAG	4 cut(s)	37, 315, 402, 830
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	678, 681
BseXI	GCAGC	3 cut(s)	379, 555, 805
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	841
BshFI	GGCC	4 cut(s)	55, 432, 568, 912
BshNI	GGYRCC	2 cut(s)	192, 241
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	2 cut(s)	797, 930
BsiWI	CGTACG	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	5 cut(s)	439, 458, 698, 878, 896
BsmAI	GTCTC	2 cut(s)	26, 723
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	4 cut(s)	55, 432, 568, 912
Bsp1286I	GDGCHC	2 cut(s)	513, 829
Bsp143I	GATC	4 cut(s)	45, 219, 523, 531
BspACI	CCGC	9 cut(s)	62, 71, 95, 98, 101, 497, 518, 570, 882
BspANI	GGCC	4 cut(s)	55, 432, 568, 912
BspCNI	CTCAG	4 cut(s)	36, 316, 403, 829
BspLI	GGNNCC	3 cut(s)	54, 194, 243
BspPI	GGATC	1 cut(s)	531
BspT107I	GGYRCC	2 cut(s)	192, 241
BsrDI	GCAATG	1 cut(s)	941
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	2 cut(s)	137, 271
BssMI	GATC	4 cut(s)	45, 219, 523, 531
BssT1I	CCWWGG	2 cut(s)	137, 271
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	346, 755
Bst6I	CTCTTC	3 cut(s)	169, 346, 830
BstBAI	YACGTR	1 cut(s)	808
BstC8I	GCNNGC	5 cut(s)	84, 106, 110, 114, 570
BstDEI	CTNAG	4 cut(s)	23, 324, 411, 816
BstKTI	GATC	4 cut(s)	48, 222, 526, 534
BstMAI	GTCTC	2 cut(s)	26, 723
BstMBI	GATC	4 cut(s)	45, 219, 523, 531
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	477
BstSNI	TACGTA	1 cut(s)	808
BstV1I	GCAGC	3 cut(s)	379, 555, 805
BstV2I	GAAGAC	2 cut(s)	266, 950
BsuRI	GGCC	4 cut(s)	55, 432, 568, 912
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	471, 824
Cac8I	GCNNGC	5 cut(s)	84, 106, 110, 114, 570
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	53, 567
CseI	GACGC	1 cut(s)	668
Csp6I	GTAC	3 cut(s)	199, 339, 805
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	3 cut(s)	199, 339, 805
DdeI	CTNAG	4 cut(s)	23, 324, 411, 816
DpnI	GATC	4 cut(s)	47, 221, 525, 533
DpnII	GATC	4 cut(s)	45, 219, 523, 531
Eam1104I	CTCTTC	3 cut(s)	169, 346, 830
EarI	CTCTTC	3 cut(s)	169, 346, 830
Eco105I	TACGTA	1 cut(s)	808
Eco130I	CCWWGG	2 cut(s)	137, 271
Eco147I	AGGCCT	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	137, 271
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	137, 271
FaeI	CATG	1 cut(s)	90
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	86
FauI	CCCGC	3 cut(s)	64, 511, 577
FauNDI	CATATG	1 cut(s)	743
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	7 cut(s)	96, 99, 102, 393, 498, 544, 794
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	7 cut(s)	96, 99, 102, 393, 498, 544, 794
FspBI	CTAG	4 cut(s)	126, 138, 540, 729
GluI	GCNGC	7 cut(s)	96, 99, 102, 393, 498, 544, 794
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	4 cut(s)	55, 432, 568, 912
HapII	CCGG	2 cut(s)	797, 930
HgaI	GACGC	1 cut(s)	668
Hin1II	CATG	1 cut(s)	90
HincII	GTYRAC	3 cut(s)	33, 418, 859
HindII	GTYRAC	3 cut(s)	33, 418, 859
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	5 cut(s)	311, 716, 759, 800, 900
HpaII	CCGG	2 cut(s)	797, 930
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	5 cut(s)	33, 418, 625, 658, 859
Hpy188I	TCNGA	3 cut(s)	258, 310, 554
Hpy8I	GTNNAC	5 cut(s)	33, 418, 625, 658, 859
Hpy99I	CGWCG	2 cut(s)	635, 920
HpyAV	CCTTC	3 cut(s)	325, 476, 696
HpyCH4III	ACNGT	2 cut(s)	346, 755
HpyCH4IV	ACGT	3 cut(s)	621, 660, 807
HpyCH4V	TGCA	4 cut(s)	377, 395, 822, 845
HpyF3I	CTNAG	4 cut(s)	23, 324, 411, 816
HpySE526I	ACGT	3 cut(s)	621, 660, 807
Hsp92II	CATG	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	45, 219, 523, 531
LmnI	GCTCC	2 cut(s)	691, 938
Lsp1109I	GCAGC	3 cut(s)	379, 555, 805
MaeI	CTAG	4 cut(s)	126, 138, 540, 729
MaeII	ACGT	3 cut(s)	621, 660, 807
MaeIII	GTNAC	2 cut(s)	279, 463
MalI	GATC	4 cut(s)	47, 221, 525, 533
MboI	GATC	4 cut(s)	45, 219, 523, 531
MboII	GAAGA	9 cut(s)	150, 156, 159, 271, 363, 541, 844, 847, 950
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	513, 829
MluCI	AATT	3 cut(s)	15, 402, 560
MlyI	GAGTC	2 cut(s)	725, 909
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	797, 930
MspR9I	CCNGG	1 cut(s)	453
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	4 cut(s)	45, 219, 523, 531
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	3 cut(s)	54, 194, 243
NmuCI	GTSAC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	612, 627
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	311, 759, 800
Pfl23II	CGTACG	1 cut(s)	804
PflFI	GACNNNGTC	1 cut(s)	715
PkrI	GCNGC	7 cut(s)	97, 100, 103, 394, 499, 545, 795
PleI	GAGTC	2 cut(s)	724, 908
PpsI	GAGTC	2 cut(s)	724, 908
Ppu21I	YACGTR	1 cut(s)	808
Psp1406I	AACGTT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	451
PspLI	CGTACG	1 cut(s)	804
PspN4I	GGNNCC	3 cut(s)	54, 194, 243
PspPI	GGNCC	2 cut(s)	53, 567
PsyI	GACNNNGTC	1 cut(s)	715
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	200, 340, 806
RsaNI	GTAC	3 cut(s)	199, 339, 805
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	7 cut(s)	96, 99, 102, 393, 498, 544, 794
Sau3AI	GATC	4 cut(s)	45, 219, 523, 531
Sau96I	GGNCC	2 cut(s)	53, 567
ScaI	AGTACT	2 cut(s)	200, 340
SchI	GAGTC	2 cut(s)	725, 909
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	513, 829
SfcI	CTRYAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	250
SnaBI	TACGTA	1 cut(s)	808
Sse9I	AATT	3 cut(s)	15, 402, 560
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	9 cut(s)	62, 71, 95, 98, 101, 497, 518, 570, 882
SspMI	CTAG	4 cut(s)	126, 138, 540, 729
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	2 cut(s)	137, 271
TaaI	ACNGT	2 cut(s)	346, 755
TaiI	ACGT	3 cut(s)	624, 663, 810
TasI	AATT	3 cut(s)	15, 402, 560
TatI	WGTACW	2 cut(s)	198, 338
TauI	GCSGC	4 cut(s)	98, 101, 104, 500
TfiI	GAWTC	3 cut(s)	311, 759, 800
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	2 cut(s)	478, 824
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	3 cut(s)	392, 543, 793
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	111, 193, 573, 751
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	2 cut(s)	478, 824
Tth111I	GACNNNGTC	1 cut(s)	715
XceI	RCATGY	1 cut(s)	90
XmaJI	CCTAGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	4 cut(s)	126, 138, 540, 729
ZrmI	AGTACT	2 cut(s)	200, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.