Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8230175.1

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

166 .. 755

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8230175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 365 bp

atgtcaccggcggtgcttgcaggttcttcctcttcttcttgctctgccactttcaacaggcaccagtacttcatcaaaactccacagatcactaccccaaaatcattggcaccactacaatgtcagaagacgagcttccaagggttgtcacttggagaagccaaaaggggtgtatctgaatccttcgtagctgagaatgttagtagtactactgtaagaagaggtcggctacttggcatagttgcaagaacagctggggctgcaaagacaattgaggctgaggttgacaagccattaggcctcactttgggtcaaaagcctggaggtggtgttaccatcactgctgtagaaggaggtgggaatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

12.46

Weight (kDa)

9.83

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	60, 109
AciI	CCGC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	68, 208
AfiI	CCNNNNNNNGG	2 cut(s)	307, 326
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	135, 191, 254
AluI	AGCT	3 cut(s)	135, 191, 254
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	60, 109
BbsI	GAAGAC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmcAI	AGTACT	2 cut(s)	68, 208
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	62, 111
BmrFI	CCNGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 326
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	307, 326
BseMII	CTCAG	2 cut(s)	183, 270
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	2 cut(s)	60, 109
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	307, 326
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	184, 271
BspLI	GGNNCC	2 cut(s)	62, 111
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	60, 109
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	37, 214
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	192, 279
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 251, 260
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	67, 207
CviQI	GTAC	2 cut(s)	67, 207
DdeI	CTNAG	2 cut(s)	192, 279
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	37, 214
EarI	CTCTTC	2 cut(s)	37, 214
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaiI	YATR	1 cut(s)	239
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	126, 178
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	193, 344
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	20, 245, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 251, 260
HpyF3I	CTNAG	2 cut(s)	192, 279
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	7 cut(s)	6, 21, 43, 77, 240, 306, 333
Lsp1109I	GCAGC	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	3, 147, 331
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	5 cut(s)	18, 24, 27, 139, 231
MfeI	CAATTG	1 cut(s)	270
MluCI	AATT	1 cut(s)	270
MnlI	CCTC	7 cut(s)	40, 215, 268, 274, 311, 317, 347
MslI	CAYNNNNRTG	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	17, 251, 260
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	2 cut(s)	62, 111
NmuCI	GTSAC	2 cut(s)	3, 147
PceI	AGGCCT	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	62, 111
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	68, 208
RsaNI	GTAC	2 cut(s)	67, 207
RseI	CAYNNNNRTG	1 cut(s)	118
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	87
ScaI	AGTACT	2 cut(s)	68, 208
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	8 cut(s)	25, 137, 193, 226, 256, 285, 328, 358
SfcI	CTRYAG	1 cut(s)	345
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	270
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	1 cut(s)	270
TatI	WGTACW	2 cut(s)	66, 206
TfiI	GAWTC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	2 cut(s)	3, 147
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	2 cut(s)	3, 147
TspDTI	ATGAA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	346
ZrmI	AGTACT	2 cut(s)	68, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.