Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

23841014 .. 23843747

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAAAATCTACTCAGGCTGTCTGATTCTGTGGCGAATTTCTTCAAAGTTATACTTTCCTCTACCATTGAGAATCAGAAACTGGATATCCCAAAAAAGTTTGCACTAGAATATGGGGAAGAACTGTCTAATGGTGCTACAGTAATTGTTCCAGCTGGTGATGTTTGGCAAGTGGGTTTGGAAAGAGCTCACAAGAGGATTTGGTTTGTGGACGGTTGGCCAGAATTTGCTGAACATTACTCCTTAACTGGTGGTCAGTTCCTAGTCTTTAGTTATCAAGGAGATTCGATATTCCATGTTCGCATTTTTGATTTCAGCTGTTGTGAGATCGAGTACCCTTCTGTTGGTCAAATTATCAAACATGAAGAGTATGTTGAACATGATGTTTGTGTGGATCAACATGTTACGAGGAAGAGGAAAAGCGTCGCTATTGCCAAGAAATTAAAGAAAGCCAAGTTGATGGTACAGAGAATGCCTCCCTCGCATGATGATCCCAGAAGAAAGAAGGAATATAAGGAAATATTTGTTGGGAACATGGCTGCTTACACTTTTCCTTACATGATAACTAGGATTGCCAAAGAACGTCAGAAGCTGATCCATGCTATCCAAATGTTCAAGTTAGAAAATCCCTTTTTCGCAGTTATCTTGCAGCAAGGTCATCTTAACAAGTCCTATCTGTATGTTCCAAGTGCTTATGCAATGAGATATATGAGAGGGTGTCCAGAATATATCAAGTTTGAGGATTCTACTGCAAACCAGTGGGATATCCGATGCCGCTTCACAACAGATACAGCAGTGAGAATAGGCAGGGGATGTGCAGAATTTTTCAGAGAGAATAATTTGAAGACTGGAGATGTCCTTCTCTATGAGCTGATCAATAAGAAGGATGTTGTGCTAAAGTTTTCGGTACTGCGTGCTGCTGGAAATGCAGTCATGGTCCATGGGAAAAAGAAGAATTCAGATATTCATGACAGAGGAACCTTGTACCTCTCCAAGAAGATTAATGCGATGGTGATATCGAGAGAAACCAAGAAGGCGATGAAGGCTGCGAAAGCTTTGAAGATTGAAAATCCTGCTTTCATGGTTATCTTGAGAGATTACCTCATGACTAACTCTGTAGTGTATGTGCCTCACGAATTTATGAAGGATCATCTGCTTGGATGTGGTAGCTCCATCAACCTCAGGGCCTCCCGTGACGAGCAATGGCCTGCGCGCTGCACTTATGACCCTAGGCGCCATACTATGAAGATACACAAAGGATTTGGTACATTTTGTAAGGAGAATAATTTGGAGGCAGGCGATGTGTGTGTGTTTGAGCTGATCAAGAATGAGGCTGCTGACTTCAAAGTTTCAGTGTTCCATGCCAGCGACTATGCGAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

462

Amino Acids

53.1

Weight (kDa)

9.14

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	14 - 104	1.3e-13	B3 DNA binding domain
B3	PF02362	211 - 305	5e-11	B3 DNA binding domain
B3	PF02362	364 - 455	8.2e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1233
AccII	CGCG	1 cut(s)	1213
AciI	CCGC	1 cut(s)	775
AclWI	GGATC	4 cut(s)	402, 485, 589, 1155
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	5 cut(s)	37, 224, 821, 955, 1136
AcyI	GRCGYC	1 cut(s)	1234
AfaI	GTAC	5 cut(s)	335, 465, 909, 986, 1267
AfiI	CCNNNNNNNGG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	7 cut(s)	46, 377, 616, 844, 1060, 1067, 1345
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	8 cut(s)	155, 188, 318, 592, 871, 1055, 1170, 1318
AluI	AGCT	8 cut(s)	155, 188, 318, 592, 871, 1055, 1170, 1318
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	4 cut(s)	402, 485, 589, 1155
AlwNI	CAGNNNCTG	2 cut(s)	82, 592
AoxI	GGCC	3 cut(s)	218, 1185, 1205
ApeKI	GCWGC	6 cut(s)	539, 649, 917, 1046, 1215, 1334
ApoI	RAATTY	5 cut(s)	37, 224, 821, 955, 1136
AseI	ATTAAT	1 cut(s)	1002
Asp700I	GAANNNNTTC	1 cut(s)	41
AspA2I	CCTAGG	1 cut(s)	1229
AspLEI	GCGC	3 cut(s)	1213, 1215, 1236
AspS9I	GGNCC	2 cut(s)	937, 1185
AsuHPI	GGTGA	2 cut(s)	170, 1024
AvaII	GGWCC	1 cut(s)	937
AvrII	CCTAGG	1 cut(s)	1229
AxyI	CCTNAGG	1 cut(s)	1181
BaeI	ACNNNNGTAYC	2 cut(s)	780, 813
BalI	TGGCCA	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	1233
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	6 cut(s)	526, 661, 904, 1033, 1202, 1321
BccI	CCATC	3 cut(s)	454, 1003, 1181
BclI	TGATCA	2 cut(s)	873, 1320
BfaI	CTAG	4 cut(s)	107, 263, 567, 1230
BfmI	CTRYAG	2 cut(s)	138, 1116
BfoI	RGCGCY	1 cut(s)	1237
BisI	GCNGC	7 cut(s)	540, 650, 775, 918, 1047, 1216, 1335
BlnI	CCTAGG	1 cut(s)	1229
BlsI	GCNGC	7 cut(s)	541, 651, 776, 919, 1048, 1217, 1336
Bme18I	GGWCC	1 cut(s)	937
BmgT120I	GGNCC	2 cut(s)	937, 1185
BmiI	GGNNCC	2 cut(s)	979, 1235
BmsI	GCATC	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	851
BplI	GAGNNNNNCTC	4 cut(s)	460, 492, 1086, 1118
BpmI	CTGGAG	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	1111
BsaHI	GRCGYC	1 cut(s)	1234
BsaJI	CCNNGG	2 cut(s)	940, 1229
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	4 cut(s)	87, 253, 757, 853
Bse21I	CCTNAGG	1 cut(s)	1181
Bse3DI	GCAATG	2 cut(s)	705, 1208
BseDI	CCNNGG	2 cut(s)	940, 1229
BseGI	GGATG	3 cut(s)	818, 892, 1166
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	705, 1208
BseMII	CTCAG	2 cut(s)	28, 1195
BseNI	ACTGG	4 cut(s)	87, 253, 757, 853
BsePI	GCGCGC	1 cut(s)	1211
BseXI	GCAGC	6 cut(s)	526, 661, 904, 1033, 1202, 1321
BsgI	GTGCAG	2 cut(s)	837, 1201
Bsh1236I	CGCG	1 cut(s)	1213
BshFI	GGCC	3 cut(s)	220, 1187, 1207
BshNI	GGYRCC	1 cut(s)	1233
BsiHKAI	GWGCWC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	220, 1187, 1207
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	1 cut(s)	775
BspANI	GGCC	3 cut(s)	220, 1187, 1207
BspCNI	CTCAG	2 cut(s)	27, 1194
BspFNI	CGCG	1 cut(s)	1213
BspHI	TCATGA	2 cut(s)	967, 1104
BspLI	GGNNCC	2 cut(s)	979, 1235
BspPI	GGATC	4 cut(s)	402, 485, 589, 1155
BspT107I	GGYRCC	1 cut(s)	1233
BsrDI	GCAATG	2 cut(s)	705, 1208
BsrI	ACTGG	4 cut(s)	87, 253, 757, 853
BssECI	CCNNGG	2 cut(s)	940, 1229
BssHII	GCGCGC	1 cut(s)	1211
BssMI	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
BssNI	GRCGYC	1 cut(s)	1234
BssT1I	CCWWGG	2 cut(s)	940, 1229
Bst4CI	ACNGT	3 cut(s)	126, 142, 215
Bst6I	CTCTTC	2 cut(s)	360, 407
BstACI	GRCGYC	1 cut(s)	1234
BstC8I	GCNNGC	5 cut(s)	915, 1209, 1213, 1297, 1366
BstDEI	CTNAG	2 cut(s)	14, 1181
BstDSI	CCRYGG	1 cut(s)	940
BstF5I	GGATG	3 cut(s)	818, 892, 1166
BstFNI	CGCG	1 cut(s)	1213
BstH2I	RGCGCY	1 cut(s)	1237
BstHHI	GCGC	3 cut(s)	1213, 1215, 1236
BstKTI	GATC	7 cut(s)	330, 397, 493, 597, 876, 1150, 1323
BstMBI	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
BstMWI	GCNNNNNNNGC	4 cut(s)	481, 926, 1043, 1052
BstNSI	RCATGY	1 cut(s)	404
BstSFI	CTRYAG	2 cut(s)	138, 1116
BstUI	CGCG	1 cut(s)	1213
BstV1I	GCAGC	6 cut(s)	526, 661, 904, 1033, 1202, 1321
BstV2I	GAAGAC	1 cut(s)	851
BstXI	CCANNNNNNTGG	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	1181
BsuRI	GGCC	3 cut(s)	220, 1187, 1207
BtgI	CCRYGG	1 cut(s)	940
BtgZI	GCGATG	3 cut(s)	1022, 1052, 1314
BtsCI	GGATG	3 cut(s)	818, 892, 1166
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	3 cut(s)	764, 801, 1359
Cac8I	GCNNGC	5 cut(s)	915, 1209, 1213, 1297, 1366
CaiI	CAGNNNCTG	2 cut(s)	82, 592
CciI	TCATGA	2 cut(s)	967, 1104
CfoI	GCGC	3 cut(s)	1213, 1215, 1236
Cfr13I	GGNCC	2 cut(s)	937, 1185
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	5 cut(s)	334, 464, 908, 985, 1266
CviQI	GTAC	5 cut(s)	334, 464, 908, 985, 1266
DdeI	CTNAG	2 cut(s)	14, 1181
DinI	GGCGCC	1 cut(s)	1235
DpnI	GATC	7 cut(s)	329, 396, 492, 596, 875, 1149, 1322
DpnII	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	360, 407
EarI	CTCTTC	2 cut(s)	360, 407
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	940, 1229
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	3 cut(s)	88, 766, 1017
Eco47I	GGWCC	1 cut(s)	937
Eco53kI	GAGCTC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	1181
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	1185
EcoRI	GAATTC	1 cut(s)	955
EcoRV	GATATC	3 cut(s)	88, 766, 1017
EcoT14I	CCWWGG	2 cut(s)	940, 1229
EcoT38I	GRGCYC	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	1235
EheI	GGCGCC	1 cut(s)	1235
ErhI	CCWWGG	2 cut(s)	940, 1229
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 645, 677
FbaI	TGATCA	2 cut(s)	873, 1320
Fnu4HI	GCNGC	7 cut(s)	540, 650, 775, 918, 1047, 1216, 1335
FokI	GGATG	3 cut(s)	825, 899, 1173
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	7 cut(s)	540, 650, 775, 918, 1047, 1216, 1335
FspBI	CTAG	4 cut(s)	107, 263, 567, 1230
GlaI	GCGC	3 cut(s)	1212, 1214, 1235
GluI	GCNGC	7 cut(s)	540, 650, 775, 918, 1047, 1216, 1335
GsuI	CTGGAG	1 cut(s)	870
HaeII	RGCGCY	1 cut(s)	1237
HaeIII	GGCC	3 cut(s)	220, 1187, 1207
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	3 cut(s)	1213, 1215, 1236
Hin1I	GRCGYC	1 cut(s)	1234
Hin6I	GCGC	3 cut(s)	1211, 1213, 1234
HinP1I	GCGC	3 cut(s)	1211, 1213, 1234
HindIII	AAGCTT	1 cut(s)	1053
HinfI	GANTC	4 cut(s)	26, 73, 284, 743
HphI	GGTGA	2 cut(s)	170, 1024
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	6 cut(s)	25, 78, 588, 770, 830, 961
Hpy188III	TCNNGA	7 cut(s)	722, 968, 1020, 1090, 1105, 1133, 1324
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	7 cut(s)	348, 499, 869, 877, 1027, 1036, 1138
HpyCH4III	ACNGT	3 cut(s)	126, 142, 215
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	7 cut(s)	104, 649, 698, 752, 818, 929, 1218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	481, 926, 1043, 1052
HpyF3I	CTNAG	2 cut(s)	14, 1181
HpySE526I	ACGT	1 cut(s)	583
Hsp92I	GRCGYC	1 cut(s)	1234
HspAI	GCGC	3 cut(s)	1211, 1213, 1234
KasI	GGCGCC	1 cut(s)	1233
Ksp22I	TGATCA	2 cut(s)	873, 1320
Kzo9I	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
LmnI	GCTCC	1 cut(s)	1175
Lsp1109I	GCAGC	6 cut(s)	526, 661, 904, 1033, 1202, 1321
LweI	GCATC	1 cut(s)	761
MaeI	CTAG	4 cut(s)	107, 263, 567, 1230
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	403, 1193
MalI	GATC	7 cut(s)	329, 396, 492, 596, 875, 1149, 1322
MboI	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	220
Mly113I	GGCGCC	1 cut(s)	1234
Mox20I	TGGCCA	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	4 cut(s)	245, 443, 663, 1002
Msp20I	TGGCCA	1 cut(s)	220
MspA1I	CMGCKG	2 cut(s)	155, 318
Mva1269I	GAATGC	1 cut(s)	477
MvnI	CGCG	1 cut(s)	1213
MwoI	GCNNNNNNNGC	4 cut(s)	481, 926, 1043, 1052
NarI	GGCGCC	1 cut(s)	1234
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
NlaIV	GGNNCC	2 cut(s)	979, 1235
NmuCI	GTSAC	1 cut(s)	1193
NspI	RCATGY	1 cut(s)	404
PagI	TCATGA	2 cut(s)	967, 1104
PauI	GCGCGC	1 cut(s)	1211
PciI	ACATGT	1 cut(s)	400
PctI	GAATGC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	26, 73, 284, 743
PkrI	GCNGC	7 cut(s)	541, 651, 776, 919, 1048, 1217, 1336
PluTI	GGCGCC	1 cut(s)	1237
PscI	ACATGT	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	1002
Psp124BI	GAGCTC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	979, 1235
PspPI	GGNCC	2 cut(s)	937, 1185
PstNI	CAGNNNCTG	2 cut(s)	82, 592
PteI	GCGCGC	1 cut(s)	1211
PvuII	CAGCTG	2 cut(s)	155, 318
RsaI	GTAC	5 cut(s)	335, 465, 909, 986, 1267
RsaNI	GTAC	5 cut(s)	334, 464, 908, 985, 1266
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	4 cut(s)	245, 443, 663, 1002
SatI	GCNGC	7 cut(s)	540, 650, 775, 918, 1047, 1216, 1335
Sau3AI	GATC	7 cut(s)	327, 394, 490, 594, 873, 1147, 1320
Sau96I	GGNCC	2 cut(s)	937, 1185
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	2 cut(s)	138, 1116
SfoI	GGCGCC	1 cut(s)	1235
SinI	GGWCC	1 cut(s)	937
SmlI	CTYRAG	1 cut(s)	1090
SmoI	CTYRAG	1 cut(s)	1090
SsiI	CCGC	1 cut(s)	775
SspDI	GGCGCC	1 cut(s)	1233
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	4 cut(s)	107, 263, 567, 1230
SstI	GAGCTC	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	940, 1229
TaaI	ACNGT	3 cut(s)	126, 142, 215
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	3 cut(s)	287, 330, 1019
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	4 cut(s)	26, 73, 284, 743
Tru1I	TTAA	4 cut(s)	245, 443, 663, 1002
Tru9I	TTAA	4 cut(s)	245, 443, 663, 1002
TscAI	CASTG	3 cut(s)	764, 801, 1359
TseFI	GTSAC	1 cut(s)	1193
TseI	GCWGC	6 cut(s)	539, 649, 917, 1046, 1215, 1334
Tsp45I	GTSAC	1 cut(s)	1193
TspDTI	ATGAA	6 cut(s)	378, 956, 1055, 1069, 1157, 1259
TspRI	CASTG	3 cut(s)	764, 801, 1359
VpaK11BI	GGWCC	1 cut(s)	937
VspI	ATTAAT	1 cut(s)	1002
XapI	RAATTY	5 cut(s)	37, 224, 821, 955, 1136
XceI	RCATGY	1 cut(s)	404
XmaJI	CCTAGG	1 cut(s)	1229
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	4 cut(s)	107, 263, 567, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.