Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

29964639 .. 29966612

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G323500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCACAAGCGGTGGTTGCTGCAGCTGCCTCCTCCTCCTCTTCTTGCTCTGCCACCTTCACCAGGCACCAGTACCACCACTCCATCAAAACTCCACAGCTTCTTACAAGTCCAAAACTTTTGCCATCAAATCAATGCCAGAAAAGTAGCTTCCAAGGCTTGTCACTTGGAGAAGCCAAAAGGGGTGTCTTTGGTTCTTTCGTAGCTGTAGCTGAGGCTGAGAAGAGGAGTAACGCAAGAACAAGAACAGGGCTTGGGATTATTACAGCAAAAACTGCCGGGGCTTCAAAGACAATTGAGGCTGAGGTTGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCTGGAGGTGGTGTTACCATCACTGCCGTGGATGGAGGTGGGAATGCAGCAAAGGCAGGGCTCAAGGCAGGGGACCAGGTCCTCTACACTAGCAGCTTCTTTGGCGATGAATTATGGCCGGCAGATAAGCTGGGATTTACAAAAACTGCCGTCCAAGCTAAGCCAGACTCTGTTTACTTTGTTGTTAGCAGGGGTGGTGCTTCTGTAGATGTTAAACGACTGCCAAAGCGTCCGGCTCCTCCTCGCTTTGGAAGGAAACTAACTGAGGCTCAAAAGGCTAGAGCTACTCATATATGCATTGACTGTGGATTCATATACACATTACAGAAGCCTTTTGAAGAGCAGCCGGATGCATACGTATGCCCTCAATGCAGAGCACCAAAGAAGAGGTTCGCACGATACGACGTGAACACCGGAAAAGCAATTGGTGGTGGTTTGCCTCCGATTGGTGTCATCATTGGCCTTCTGGCTGGTCTTGCCGGGGTTGGAGCATTGCTTGTATACGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

29.81

Weight (kDa)

9.77

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	843
AciI	CCGC	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	458
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	5 cut(s)	63, 331, 350, 590, 788
AgsI	TTSAA	3 cut(s)	288, 680, 854
AjiI	CACGTC	1 cut(s)	748
AjnI	CCWGG	3 cut(s)	62, 343, 417
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	9 cut(s)	26, 100, 150, 206, 212, 438, 472, 500, 626
AluI	AGCT	9 cut(s)	26, 100, 150, 206, 212, 438, 472, 500, 626
Alw21I	GWGCWC	1 cut(s)	721
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	3 cut(s)	322, 458, 802
ApeKI	GCWGC	6 cut(s)	20, 23, 26, 389, 435, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	415, 421
AsuC2I	CCSGG	2 cut(s)	280, 823
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	415, 421
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	405
BarI	GAAGNNNNNNTAC	1 cut(s)	834
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	721
BbvCI	CCTCAGC	2 cut(s)	213, 303
BbvI	GCAGC	6 cut(s)	7, 13, 35, 401, 447, 697
BccI	CCATC	4 cut(s)	92, 133, 368, 368
BceAI	ACGGC	2 cut(s)	353, 476
BciT130I	CCWGG	3 cut(s)	64, 345, 419
BcnI	CCSGG	2 cut(s)	280, 823
BfaI	CTAG	2 cut(s)	432, 621
BfmI	CTRYAG	3 cut(s)	21, 207, 546
BisI	GCNGC	6 cut(s)	21, 24, 27, 390, 436, 686
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	6 cut(s)	22, 25, 28, 391, 437, 687
Bme1390I	CCNGG	5 cut(s)	64, 280, 345, 419, 823
Bme18I	GGWCC	2 cut(s)	415, 421
BmgBI	CACGTC	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	415, 421
BmiI	GGNNCC	3 cut(s)	68, 416, 579
BmrFI	CCNGG	5 cut(s)	64, 280, 345, 419, 823
BmsI	GCATC	1 cut(s)	682
BpiI	GAAGAC	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	2 cut(s)	213, 303
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	280, 823
BsaAI	YACGTR	1 cut(s)	700
BsaJI	CCNNGG	4 cut(s)	154, 279, 369, 822
BsaWI	WCCGGW	1 cut(s)	755
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 339, 369
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 331, 350, 590, 788
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	833
BseBI	CCWGG	3 cut(s)	64, 345, 419
BseDI	CCNNGG	4 cut(s)	154, 279, 369, 822
BseGI	GGATG	2 cut(s)	379, 697
BseLI	CCNNNNNNNGG	5 cut(s)	63, 331, 350, 590, 788
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	4 cut(s)	204, 210, 294, 597
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	6 cut(s)	22, 25, 28, 241, 570, 573
BseXI	GCAGC	6 cut(s)	7, 13, 35, 401, 447, 697
BseYI	CCCAGC	1 cut(s)	472
BshFI	GGCC	3 cut(s)	324, 460, 804
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	6 cut(s)	279, 461, 575, 689, 756, 822
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	5 cut(s)	63, 331, 350, 590, 788
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	324, 460, 804
Bsp1286I	GDGCHC	2 cut(s)	405, 721
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	3 cut(s)	324, 460, 804
BspCNI	CTCAG	4 cut(s)	205, 211, 295, 598
BspLI	GGNNCC	3 cut(s)	68, 416, 579
BspMAI	CTGCAG	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	675
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	4 cut(s)	154, 279, 369, 822
BssNAI	GTATAC	1 cut(s)	844
BssT1I	CCWWGG	1 cut(s)	154
Bst1107I	GTATAC	1 cut(s)	844
Bst2UI	CCWGG	3 cut(s)	64, 345, 419
Bst4CI	ACNGT	2 cut(s)	647, 848
Bst6I	CTCTTC	4 cut(s)	46, 218, 675, 722
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	5 cut(s)	213, 219, 303, 501, 606
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	379, 697
BstNI	CCWGG	3 cut(s)	64, 345, 419
BstSCI	CCNGG	5 cut(s)	62, 278, 343, 417, 821
BstSFI	CTRYAG	3 cut(s)	21, 207, 546
BstSNI	TACGTA	1 cut(s)	700
BstV1I	GCAGC	6 cut(s)	7, 13, 35, 401, 447, 697
BstV2I	GAAGAC	1 cut(s)	842
BstZ17I	GTATAC	1 cut(s)	844
BsuRI	GGCC	3 cut(s)	324, 460, 804
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	379, 697
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	415, 421
CseI	GACGC	1 cut(s)	560
CsiI	ACCWGGT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	73
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	5 cut(s)	213, 219, 303, 501, 606
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	4 cut(s)	46, 218, 675, 722
EarI	CTCTTC	4 cut(s)	46, 218, 675, 722
Eco105I	TACGTA	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	415, 421
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	62, 343, 417
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	2 cut(s)	641, 697
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	154
FaiI	YATR	9 cut(s)	457, 633, 635, 637, 656, 658, 697, 703, 844
FaqI	GGGAC	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 390, 436, 686
FokI	GGATG	2 cut(s)	386, 704
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 390, 436, 686
FspBI	CTAG	2 cut(s)	432, 621
GluI	GCNGC	6 cut(s)	21, 24, 27, 390, 436, 686
GsaI	CCCAGC	1 cut(s)	476
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	324, 460, 804
HapII	CCGG	6 cut(s)	279, 461, 575, 689, 756, 822
HgaI	GACGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	509, 651
HpaII	CCGG	6 cut(s)	279, 461, 575, 689, 756, 822
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	4 cut(s)	310, 517, 751, 844
Hpy188I	TCNGA	1 cut(s)	786
Hpy8I	GTNNAC	4 cut(s)	310, 517, 751, 844
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	3 cut(s)	67, 588, 815
HpyCH4III	ACNGT	2 cut(s)	647, 848
HpyCH4IV	ACGT	2 cut(s)	699, 747
HpyCH4V	TGCA	5 cut(s)	23, 389, 639, 695, 714
HpyF3I	CTNAG	5 cut(s)	213, 219, 303, 501, 606
HpySE526I	ACGT	2 cut(s)	699, 747
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	583, 830
Lsp1109I	GCAGC	6 cut(s)	7, 13, 35, 401, 447, 697
LweI	GCATC	1 cut(s)	682
MabI	ACCWGGT	1 cut(s)	417
MaeI	CTAG	2 cut(s)	432, 621
MaeII	ACGT	2 cut(s)	699, 747
MaeIII	GTNAC	4 cut(s)	3, 162, 230, 355
MboII	GAAGA	5 cut(s)	33, 235, 692, 739, 842
MfeI	CAATTG	2 cut(s)	294, 765
MhlI	GDGCHC	2 cut(s)	405, 721
MluCI	AATT	3 cut(s)	294, 452, 765
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	808
Mph1103I	ATGCAT	2 cut(s)	641, 697
MroNI	GCCGGC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	2 cut(s)	368, 700
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	6 cut(s)	279, 461, 575, 689, 756, 822
MspR9I	CCNGG	5 cut(s)	64, 280, 345, 419, 823
MunI	CAATTG	2 cut(s)	294, 765
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	3 cut(s)	64, 345, 419
NaeI	GCCGGC	1 cut(s)	462
NciI	CCSGG	2 cut(s)	280, 823
NgoMIV	GCCGGC	1 cut(s)	460
NlaIV	GGNNCC	3 cut(s)	68, 416, 579
NmuCI	GTSAC	2 cut(s)	3, 162
NsiI	ATGCAT	2 cut(s)	641, 697
OliI	CACNNNNGTG	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	391
PdiI	GCCGGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	651
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	22, 25, 28, 391, 437, 687
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	62, 343, 417
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	3 cut(s)	62, 343, 417
PspN4I	GGNNCC	3 cut(s)	68, 416, 579
PspPI	GGNCC	2 cut(s)	415, 421
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	368, 700
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	6 cut(s)	21, 24, 27, 390, 436, 686
Sau96I	GGNCC	2 cut(s)	415, 421
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	5 cut(s)	64, 280, 345, 419, 823
SduI	GDGCHC	2 cut(s)	405, 721
SexAI	ACCWGGT	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	3 cut(s)	21, 207, 546
SinI	GGWCC	2 cut(s)	415, 421
SmiMI	CAYNNNNRTG	2 cut(s)	368, 700
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SnaBI	TACGTA	1 cut(s)	700
Sse9I	AATT	3 cut(s)	294, 452, 765
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	432, 621
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	5 cut(s)	62, 278, 343, 417, 821
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	647, 848
TaiI	ACGT	2 cut(s)	702, 750
TasI	AATT	3 cut(s)	294, 452, 765
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	3, 162
TseI	GCWGC	6 cut(s)	20, 23, 26, 389, 435, 685
Tsp45I	GTSAC	2 cut(s)	3, 162
TspDTI	ATGAA	2 cut(s)	465, 643
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	415, 421
XagI	CCTNNNNNAGG	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	2 cut(s)	432, 621
Zsp2I	ATGCAT	2 cut(s)	641, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.