Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

68179662 .. 68181166

Gene Structure 1505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG468000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCACCGGCGGTGCTTGCAGGTTCTTCCTCTTCTTCTTGCTCTGCCACTTTCAACAGGCACCAGTACTCCATCAAAACTCCACAGATCACTACCCCAAAATCATTGGCACCACTACAATGTCAGGCCGTGGAAGGAGGTGGAAATGCAGCGAAGGCAGGGCTTAAGGCAGGGGACCAGGTGCTCTACACTAGCAGCTTCTTTGGAGATGAATTATGGCCAGCGGATAAGCTTGGATTTACTAAAACTGCCATCAACGCGAAGCCTGACAACGTTTACTTTGTTGTTAGCAGAGGTGGTGCTGAAGTAGATGTTAAACGGCTACCAAAGCGTCCAGCTCCTCCTCGCTTTGGAAGGAAACTAACCGAGTCTCAAAAGGCTAGAGCTACTCACATATGCCTTGACTGTGGATTCATATACACATTATCAAAGCCTTTTGATGAGCAGCCGGATTCGTACGTATGCCCTCAATGTATAGCACCGAAGAAGAGGTTTGCAAGATATGATGTCAACACAGGGAAACCTATCGGTGGCGGTTTGCCTCCTATTGGAGTCATTATTGGCCTTGTCGCTGGTGTTGCCGGTGTGGGAGCATTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.67

Weight (kDa)

9.42

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	60, 109
AccII	CGCG	1 cut(s)	260
AciI	CCGC	3 cut(s)	11, 224, 534
AclI	AACGTT	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	68, 458
AfiI	CCNNNNNNNGG	3 cut(s)	350, 530, 548
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	55, 614
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	198, 232, 338, 386
AluI	AGCT	4 cut(s)	198, 232, 338, 386
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	375
AoxI	GGCC	3 cut(s)	126, 218, 562
ApeKI	GCWGC	3 cut(s)	149, 195, 445
AspS9I	GGNCC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	220
BanI	GGYRCC	2 cut(s)	60, 109
BarI	GAAGNNNNNNTAC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	161, 207, 457
BccI	CCATC	2 cut(s)	80, 260
BceAI	ACGGC	2 cut(s)	113, 335
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	192, 381
BfrI	CTTAAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	150, 196, 446
BlsI	GCNGC	3 cut(s)	151, 197, 447
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	3 cut(s)	62, 111, 176
BmrFI	CCNGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	460
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 530, 548
Bse118I	RCCGGY	2 cut(s)	7, 581
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	350, 530, 548
BseMI	GCAATG	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	330, 333
BseXI	GCAGC	3 cut(s)	161, 207, 457
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	128, 220, 564
BshNI	GGYRCC	2 cut(s)	60, 109
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	3 cut(s)	8, 449, 582
BsiWI	CGTACG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	350, 530, 548
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	128, 220, 564
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	11, 224, 534
BspANI	GGCC	3 cut(s)	128, 220, 564
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	3 cut(s)	62, 111, 176
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	60, 109
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	593
BsrFI	RCCGGY	2 cut(s)	7, 581
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	7, 581
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	37, 482
BstAFI	CTTAAG	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	18, 222
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 155, 257, 328, 578
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstSNI	TACGTA	1 cut(s)	460
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	161, 207, 457
BstV2I	GAAGAC	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	128, 220, 564
BtgI	CCRYGG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	18, 222
Cfr10I	RCCGGY	2 cut(s)	7, 581
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	320
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	67, 457
CviQI	GTAC	2 cut(s)	67, 457
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	37, 482
EarI	CTCTTC	2 cut(s)	37, 482
Eco105I	TACGTA	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	177
FaqI	GGGAC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	3 cut(s)	150, 196, 446
Fsp4HI	GCNGC	3 cut(s)	150, 196, 446
FspBI	CTAG	2 cut(s)	192, 381
GluI	GCNGC	3 cut(s)	150, 196, 446
HaeIII	GGCC	3 cut(s)	128, 220, 564
HapII	CCGG	3 cut(s)	8, 449, 582
HgaI	GACGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	4 cut(s)	368, 411, 452, 552
HpaII	CCGG	3 cut(s)	8, 449, 582
Hpy166II	GTNNAC	2 cut(s)	277, 511
Hpy8I	GTNNAC	2 cut(s)	277, 511
HpyAV	CCTTC	3 cut(s)	128, 148, 348
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	273, 459
HpyCH4V	TGCA	3 cut(s)	20, 149, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 155, 257, 328, 578
HpySE526I	ACGT	2 cut(s)	273, 459
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	343, 590
Lsp1109I	GCAGC	3 cut(s)	161, 207, 457
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	2 cut(s)	192, 381
MaeII	ACGT	2 cut(s)	273, 459
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	6 cut(s)	18, 24, 27, 496, 499, 602
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	1 cut(s)	212
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	377, 561
MnlI	CCTC	8 cut(s)	40, 131, 287, 351, 354, 477, 483, 552
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	2 cut(s)	165, 315
MslI	CAYNNNNRTG	1 cut(s)	118
Msp20I	TGGCCA	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	3 cut(s)	8, 449, 582
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	17, 155, 257, 328, 578
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	3 cut(s)	62, 111, 176
NmuCI	GTSAC	1 cut(s)	3
PfeI	GAWTC	2 cut(s)	411, 452
Pfl23II	CGTACG	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	151, 197, 447
PleI	GAGTC	2 cut(s)	376, 560
PpsI	GAGTC	2 cut(s)	376, 560
Ppu21I	YACGTR	1 cut(s)	460
Psp1406I	AACGTT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspLI	CGTACG	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	62, 111, 176
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	68, 458
RsaNI	GTAC	2 cut(s)	67, 457
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	165, 315
SatI	GCNGC	3 cut(s)	150, 196, 446
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	2 cut(s)	377, 561
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	186
SexAI	ACCWGGT	1 cut(s)	177
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SnaBI	TACGTA	1 cut(s)	460
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	3 cut(s)	11, 224, 534
SspMI	CTAG	2 cut(s)	192, 381
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	276, 462
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	411, 452
Tru1I	TTAA	2 cut(s)	165, 315
Tru9I	TTAA	2 cut(s)	165, 315
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	149, 195, 445
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	225, 403
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	175
XspI	CTAG	2 cut(s)	192, 381
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.