Domain present in PSD-95, Dlg, and ZO-1/2.
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17170 AT5G17170 |
| fragaria_vesca | FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560 |
| malus_domestica | MD01G1233200.v1.1 MD07G1305400.v1.1 |
| prunus_persica | Prupe.2G323500_v2.0.a1 |
| pyrus_communis | pycom01g24150 pycom07g27870 |
| rosa_chinensis | RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811 |
| rosa_laevigata | RLG00000026095 RLG00000026096 |
| rosa_multiflora | Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00277220 |
| rosa_rugosa | Rorug01G0442300 Rorug01G0442300 |
| rosa_samantha | Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600 |
| rosa_wichuraiana | Rw1G040430 Rw1G040440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 548 |
| AccI | GTMKAC | 1 cut(s) | 477 |
| AciI | CCGC | 1 cut(s) | 309 |
| AcoI | YGGCCR | 1 cut(s) | 768 |
| AfaI | GTAC | 1 cut(s) | 389 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 548, 746 |
| AgeI | ACCGGT | 1 cut(s) | 326 |
| AgsI | TTSAA | 4 cut(s) | 69, 128, 266, 812 |
| AjiI | CACGTC | 1 cut(s) | 706 |
| AleI | CACNNNNGTG | 1 cut(s) | 329 |
| AluBI | AGCT | 7 cut(s) | 29, 245, 415, 433, 584, 782, 791 |
| AluI | AGCT | 7 cut(s) | 29, 245, 415, 433, 584, 782, 791 |
| Alw26I | GTCTC | 3 cut(s) | 40, 184, 560 |
| AoxI | GGCC | 3 cut(s) | 419, 720, 768 |
| ApeKI | GCWGC | 3 cut(s) | 239, 242, 350 |
| AsiGI | ACCGGT | 1 cut(s) | 326 |
| AsuHPI | GGTGA | 2 cut(s) | 40, 316 |
| AsuII | TTCGAA | 2 cut(s) | 149, 222 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 642, 675 |
| BbsI | GAAGAC | 1 cut(s) | 800 |
| BbvI | GCAGC | 3 cut(s) | 251, 254, 362 |
| BccI | CCATC | 1 cut(s) | 82 |
| BciVI | GTATCC | 1 cut(s) | 643 |
| BcoDI | GTCTC | 3 cut(s) | 40, 184, 560 |
| BfaI | CTAG | 1 cut(s) | 293 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BfuI | GTATCC | 1 cut(s) | 643 |
| BglII | AGATCT | 1 cut(s) | 168 |
| BisI | GCNGC | 3 cut(s) | 240, 243, 351 |
| BlsI | GCNGC | 3 cut(s) | 241, 244, 352 |
| BmgBI | CACGTC | 1 cut(s) | 706 |
| BmiI | GGNNCC | 1 cut(s) | 537 |
| BpiI | GAAGAC | 1 cut(s) | 800 |
| BpmI | CTGGAG | 1 cut(s) | 393 |
| Bpu14I | TTCGAA | 2 cut(s) | 149, 222 |
| BsaAI | YACGTR | 1 cut(s) | 658 |
| BsaJI | CCNNGG | 1 cut(s) | 542 |
| BsaWI | WCCGGW | 1 cut(s) | 326 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 18, 48, 366, 396 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 548, 746 |
| Bse118I | RCCGGY | 2 cut(s) | 326, 770 |
| BseDI | CCNNGG | 1 cut(s) | 542 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 548, 746 |
| BseMII | CTCAG | 2 cut(s) | 555, 584 |
| BseRI | GAGGAG | 3 cut(s) | 354, 528, 744 |
| BseXI | GCAGC | 3 cut(s) | 251, 254, 362 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| BshFI | GGCC | 3 cut(s) | 421, 722, 770 |
| BshTI | ACCGGT | 1 cut(s) | 326 |
| BsiSI | CCGG | 4 cut(s) | 327, 533, 647, 771 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 548, 746 |
| BsmAI | GTCTC | 3 cut(s) | 40, 184, 560 |
| BsnI | GGCC | 3 cut(s) | 421, 722, 770 |
| Bsp119I | TTCGAA | 2 cut(s) | 149, 222 |
| Bsp1407I | TGTACA | 1 cut(s) | 387 |
| Bsp143I | GATC | 3 cut(s) | 168, 192, 376 |
| BspACI | CCGC | 1 cut(s) | 309 |
| BspANI | GGCC | 3 cut(s) | 421, 722, 770 |
| BspCNI | CTCAG | 2 cut(s) | 556, 583 |
| BspLI | GGNNCC | 1 cut(s) | 537 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspT104I | TTCGAA | 2 cut(s) | 149, 222 |
| BsrFI | RCCGGY | 2 cut(s) | 326, 770 |
| BsrGI | TGTACA | 1 cut(s) | 387 |
| BssAI | RCCGGY | 2 cut(s) | 326, 770 |
| BssECI | CCNNGG | 1 cut(s) | 542 |
| BssMI | GATC | 3 cut(s) | 168, 192, 376 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 121, 546 |
| Bst6I | CTCTTC | 3 cut(s) | 43, 149, 680 |
| BstAUI | TGTACA | 1 cut(s) | 387 |
| BstBAI | YACGTR | 1 cut(s) | 658 |
| BstBI | TTCGAA | 2 cut(s) | 149, 222 |
| BstC8I | GCNNGC | 1 cut(s) | 423 |
| BstDEI | CTNAG | 3 cut(s) | 249, 564, 570 |
| BstDSI | CCRYGG | 1 cut(s) | 542 |
| BstKTI | GATC | 3 cut(s) | 171, 195, 379 |
| BstMAI | GTCTC | 3 cut(s) | 40, 184, 560 |
| BstMBI | GATC | 3 cut(s) | 168, 192, 376 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 239, 356, 458, 788 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstSNI | TACGTA | 1 cut(s) | 658 |
| BstV1I | GCAGC | 3 cut(s) | 251, 254, 362 |
| BstV2I | GAAGAC | 1 cut(s) | 800 |
| BstX2I | RGATCY | 1 cut(s) | 168 |
| BstYI | RGATCY | 1 cut(s) | 168 |
| BsuI | GTATCC | 1 cut(s) | 643 |
| BsuRI | GGCC | 3 cut(s) | 421, 722, 770 |
| BtgI | CCRYGG | 1 cut(s) | 542 |
| BtrI | CACGTC | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 1 cut(s) | 423 |
| Cfr10I | RCCGGY | 2 cut(s) | 326, 770 |
| CseI | GACGC | 1 cut(s) | 518 |
| Csp6I | GTAC | 1 cut(s) | 388 |
| CspAI | ACCGGT | 1 cut(s) | 326 |
| CviQI | GTAC | 1 cut(s) | 388 |
| DdeI | CTNAG | 3 cut(s) | 249, 564, 570 |
| DpnI | GATC | 3 cut(s) | 170, 194, 378 |
| DpnII | GATC | 3 cut(s) | 168, 192, 376 |
| EaeI | YGGCCR | 1 cut(s) | 768 |
| Eam1104I | CTCTTC | 3 cut(s) | 43, 149, 680 |
| EarI | CTCTTC | 3 cut(s) | 43, 149, 680 |
| Eco105I | TACGTA | 1 cut(s) | 658 |
| FaiI | YATR | 8 cut(s) | 614, 616, 655, 661, 674, 702, 725, 804 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 348, 380, 422, 454 |
| FblI | GTMKAC | 1 cut(s) | 477 |
| Fnu4HI | GCNGC | 3 cut(s) | 240, 243, 351 |
| Fsp4HI | GCNGC | 3 cut(s) | 240, 243, 351 |
| FspBI | CTAG | 1 cut(s) | 293 |
| GluI | GCNGC | 3 cut(s) | 240, 243, 351 |
| GsuI | CTGGAG | 1 cut(s) | 393 |
| HaeIII | GGCC | 3 cut(s) | 421, 722, 770 |
| HapII | CCGG | 4 cut(s) | 327, 533, 647, 771 |
| HgaI | GACGC | 1 cut(s) | 518 |
| HincII | GTYRAC | 1 cut(s) | 561 |
| HindII | GTYRAC | 1 cut(s) | 561 |
| HindIII | AAGCTT | 1 cut(s) | 431 |
| HinfI | GANTC | 6 cut(s) | 146, 219, 289, 470, 568, 609 |
| HpaI | GTTAAC | 1 cut(s) | 561 |
| HpaII | CCGG | 4 cut(s) | 327, 533, 647, 771 |
| HphI | GGTGA | 2 cut(s) | 40, 316 |
| Hpy166II | GTNNAC | 6 cut(s) | 334, 388, 390, 478, 561, 709 |
| Hpy188I | TCNGA | 5 cut(s) | 166, 184, 197, 288, 573 |
| Hpy188III | TCNNGA | 3 cut(s) | 24, 372, 599 |
| Hpy8I | GTNNAC | 6 cut(s) | 334, 388, 390, 478, 561, 709 |
| HpyAV | CCTTC | 3 cut(s) | 52, 546, 568 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 121, 546 |
| HpyCH4IV | ACGT | 3 cut(s) | 8, 657, 705 |
| HpyCH4V | TGCA | 4 cut(s) | 425, 452, 500, 695 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 239, 356, 458, 788 |
| HpyF3I | CTNAG | 3 cut(s) | 249, 564, 570 |
| HpySE526I | ACGT | 3 cut(s) | 8, 657, 705 |
| KspAI | GTTAAC | 1 cut(s) | 561 |
| Kzo9I | GATC | 3 cut(s) | 168, 192, 376 |
| LmnI | GCTCC | 4 cut(s) | 26, 541, 779, 788 |
| Lsp1109I | GCAGC | 3 cut(s) | 251, 254, 362 |
| MaeI | CTAG | 1 cut(s) | 293 |
| MaeII | ACGT | 3 cut(s) | 8, 657, 705 |
| MalI | GATC | 3 cut(s) | 170, 194, 378 |
| MboI | GATC | 3 cut(s) | 168, 192, 376 |
| MboII | GAAGA | 9 cut(s) | 30, 37, 155, 163, 163, 166, 228, 697, 800 |
| MfeI | CAATTG | 1 cut(s) | 744 |
| MflI | RGATCY | 1 cut(s) | 168 |
| MluCI | AATT | 2 cut(s) | 453, 744 |
| MlyI | GAGTC | 2 cut(s) | 283, 562 |
| MmeI | TCCRAC | 2 cut(s) | 120, 766 |
| MseI | TTAA | 4 cut(s) | 203, 366, 513, 560 |
| MslI | CAYNNNNRTG | 2 cut(s) | 329, 658 |
| MspI | CCGG | 4 cut(s) | 327, 533, 647, 771 |
| MunI | CAATTG | 1 cut(s) | 744 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 239, 356, 458, 788 |
| NdeII | GATC | 3 cut(s) | 168, 192, 376 |
| NlaIV | GGNNCC | 1 cut(s) | 537 |
| NspV | TTCGAA | 2 cut(s) | 149, 222 |
| OliI | CACNNNNGTG | 1 cut(s) | 329 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 14, 180 |
| PfeI | GAWTC | 4 cut(s) | 146, 219, 470, 609 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 548 |
| PinAI | ACCGGT | 1 cut(s) | 326 |
| PkrI | GCNGC | 3 cut(s) | 241, 244, 352 |
| PleI | GAGTC | 2 cut(s) | 283, 562 |
| PpsI | GAGTC | 2 cut(s) | 283, 562 |
| Ppu21I | YACGTR | 1 cut(s) | 658 |
| PspN4I | GGNNCC | 1 cut(s) | 537 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PsuI | RGATCY | 1 cut(s) | 168 |
| RsaI | GTAC | 1 cut(s) | 389 |
| RsaNI | GTAC | 1 cut(s) | 388 |
| RseI | CAYNNNNRTG | 2 cut(s) | 329, 658 |
| SaqAI | TTAA | 4 cut(s) | 203, 366, 513, 560 |
| SatI | GCNGC | 3 cut(s) | 240, 243, 351 |
| Sau3AI | GATC | 3 cut(s) | 168, 192, 376 |
| SchI | GAGTC | 2 cut(s) | 283, 562 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| SfuI | TTCGAA | 2 cut(s) | 149, 222 |
| SgrAI | CRCCGGYG | 1 cut(s) | 326 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 329, 658 |
| SnaBI | TACGTA | 1 cut(s) | 658 |
| Sse9I | AATT | 2 cut(s) | 453, 744 |
| SsiI | CCGC | 1 cut(s) | 309 |
| SspMI | CTAG | 1 cut(s) | 293 |
| TaaI | ACNGT | 3 cut(s) | 34, 121, 546 |
| TaiI | ACGT | 3 cut(s) | 11, 660, 708 |
| TaqI | TCGA | 2 cut(s) | 149, 222 |
| TasI | AATT | 2 cut(s) | 453, 744 |
| TatI | WGTACW | 1 cut(s) | 387 |
| TfiI | GAWTC | 4 cut(s) | 146, 219, 470, 609 |
| Tru1I | TTAA | 4 cut(s) | 203, 366, 513, 560 |
| Tru9I | TTAA | 4 cut(s) | 203, 366, 513, 560 |
| TseI | GCWGC | 3 cut(s) | 239, 242, 350 |
| TspDTI | ATGAA | 1 cut(s) | 601 |
| TspGWI | ACGGA | 1 cut(s) | 351 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 548 |
| XmiI | GTMKAC | 1 cut(s) | 477 |
| XspI | CTAG | 1 cut(s) | 293 |