Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

36243105 .. 36245287

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1305400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCACAGGCGGTGCTTGCAGCTGCTTCCTCCTCCTCCTCTTGCTCCCCCACCTTCAACAGGCACCACTCGACAAGAACTCCACAGGTCGCTACTCCAAAACAATTTCCACCGGTTCAATGCCAGAAATCTAGCTTCCAAGGATTGTCACTTGGAGAAGCCAAACGGGGAGTGCTATATTCTCTGGTAGCAGATTTGAATAATAGGAGTGGTTTAGGCAACAACGTAAGAAGAGGGCTTAGGGTTACAGCAAGAACTGCTGGGGCAGCCAAGTCGATCGAGGCTGAGGTGGACAAGCCTTTAGGCCTCACTTTGGGACAAAAGCCCGGAGGTCCTGTTACCATCACTGCTGTGGATGGAGGTGGGAATGCAGCAAAGGCAGGGCTCAAGGCAGGGGACCAGGTCATCTACACCAGCAGCTTCTTTGGTGATGAATTATGGCCAGCAGATAAACTAGGGTTTACAAAAACTGCCATCAATGCCAAGCCAGACTCTGTTTACTTTGTTGTTAGCAGGGGTGGTGCTCCTGTCGACGTTAAACGCCTACCAAAGCGTCCAGCTCCACCTCGTTTTGGACGGAAACTAACCGAGGCTCAAAAGGCTAGAGCTACTCACATATGTCTTGACTGTGGATTCATATACACATTACAGAAGCCTTTTGATGAGCAGCCGGATTCGTACACATGCCCTCAATGTCTAGCACCAAAGAAGCGGTTTGCACAATACGATGTCAACACCGGGAAAGCCATTGGCGGCGGTTTGCCTCCGATCGGCGTCATCATTGGCCTAGCGGCTGGTCTTGCCGGCGTCGGAGCTTTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

29.22

Weight (kDa)

9.78

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	5 cut(s)	11, 712, 753, 756, 791
AcoI	YGGCCR	1 cut(s)	440
AcyI	GRCGYC	2 cut(s)	774, 807
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	4 cut(s)	60, 313, 572, 770
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	58, 119, 199, 836
AjnI	CCWGG	1 cut(s)	399
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	6 cut(s)	23, 135, 420, 560, 608, 815
AluI	AGCT	6 cut(s)	23, 135, 420, 560, 608, 815
Alw21I	GWGCWC	1 cut(s)	526
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	3 cut(s)	304, 440, 784
ApeKI	GCWGC	6 cut(s)	20, 23, 266, 371, 417, 667
AsiGI	ACCGGT	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	332, 397
AsuC2I	CCSGG	2 cut(s)	327, 739
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	2 cut(s)	332, 397
BalI	TGGCCA	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	6 cut(s)	10, 32, 278, 383, 429, 679
BccI	CCATC	3 cut(s)	350, 350, 482
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	1 cut(s)	401
BcnI	CCSGG	2 cut(s)	327, 739
BfaI	CTAG	5 cut(s)	132, 455, 603, 698, 788
BisI	GCNGC	8 cut(s)	21, 24, 267, 372, 418, 668, 754, 792
BlsI	GCNGC	8 cut(s)	22, 25, 268, 373, 419, 669, 755, 793
Bme1390I	CCNGG	3 cut(s)	327, 401, 739
Bme18I	GGWCC	2 cut(s)	332, 397
BmgT120I	GGNCC	2 cut(s)	332, 397
BmiI	GGNNCC	2 cut(s)	65, 398
BmrFI	CCNGG	3 cut(s)	327, 401, 739
BpiI	GAAGAC	1 cut(s)	824
Bpu10I	CCTNAGC	2 cut(s)	239, 285
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	327, 739
BsaHI	GRCGYC	2 cut(s)	774, 807
BsaJI	CCNNGG	2 cut(s)	139, 588
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 321, 351
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 313, 572, 770
Bse118I	RCCGGY	2 cut(s)	112, 803
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	139, 588
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	4 cut(s)	60, 313, 572, 770
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	22, 25, 28
BseXI	GCAGC	6 cut(s)	10, 32, 278, 383, 429, 679
BseYI	CCCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	2 cut(s)	279, 771
BshFI	GGCC	3 cut(s)	306, 442, 786
BshNI	GGYRCC	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	112
BsiEI	CGRYCG	2 cut(s)	279, 771
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	5 cut(s)	113, 327, 671, 738, 804
BslFI	GGGAC	2 cut(s)	330, 410
BslI	CCNNNNNNNGG	4 cut(s)	60, 313, 572, 770
BsmFI	GGGAC	2 cut(s)	330, 410
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	306, 442, 786
Bsp1286I	GDGCHC	2 cut(s)	387, 526
Bsp143I	GATC	2 cut(s)	276, 768
BspACI	CCGC	5 cut(s)	11, 712, 753, 756, 791
BspANI	GGCC	3 cut(s)	306, 442, 786
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	65, 398
BspT107I	GGYRCC	1 cut(s)	63
BsrFI	RCCGGY	2 cut(s)	112, 803
BssAI	RCCGGY	2 cut(s)	112, 803
BssECI	CCNNGG	2 cut(s)	139, 588
BssMI	GATC	2 cut(s)	276, 768
BssNI	GRCGYC	2 cut(s)	774, 807
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	226
BstACI	GRCGYC	2 cut(s)	774, 807
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	18, 444, 805
BstDEI	CTNAG	2 cut(s)	239, 285
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	279, 771
BstMBI	GATC	2 cut(s)	276, 768
BstMCI	CGRYCG	2 cut(s)	279, 771
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 257, 266, 377, 479, 599, 800
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	3 cut(s)	325, 399, 737
BstV1I	GCAGC	6 cut(s)	10, 32, 278, 383, 429, 679
BstV2I	GAAGAC	1 cut(s)	824
BsuRI	GGCC	3 cut(s)	306, 442, 786
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	18, 444, 805
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr10I	RCCGGY	2 cut(s)	112, 803
Cfr13I	GGNCC	2 cut(s)	332, 397
CseI	GACGC	3 cut(s)	542, 763, 796
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	679
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	1 cut(s)	684
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	239, 285
DpnI	GATC	2 cut(s)	278, 770
DpnII	GATC	2 cut(s)	276, 768
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	332, 397
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	687
FaiI	YATR	9 cut(s)	178, 439, 617, 619, 638, 640, 685, 826, 828
FaqI	GGGAC	2 cut(s)	330, 410
FatI	CATG	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	617
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	8 cut(s)	21, 24, 267, 372, 418, 668, 754, 792
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	8 cut(s)	21, 24, 267, 372, 418, 668, 754, 792
FspBI	CTAG	5 cut(s)	132, 455, 603, 698, 788
GluI	GCNGC	8 cut(s)	21, 24, 267, 372, 418, 668, 754, 792
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	306, 442, 786
HapII	CCGG	5 cut(s)	113, 327, 671, 738, 804
HgaI	GACGC	3 cut(s)	542, 763, 796
Hin1I	GRCGYC	2 cut(s)	774, 807
Hin1II	CATG	1 cut(s)	687
HincII	GTYRAC	2 cut(s)	532, 733
HindII	GTYRAC	2 cut(s)	532, 733
HinfI	GANTC	3 cut(s)	491, 633, 674
HpaII	CCGG	5 cut(s)	113, 327, 671, 738, 804
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	6 cut(s)	292, 462, 499, 532, 681, 733
Hpy188I	TCNGA	2 cut(s)	768, 812
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	6 cut(s)	292, 462, 499, 532, 681, 733
Hpy99I	CGWCG	2 cut(s)	536, 812
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4IV	ACGT	2 cut(s)	225, 534
HpyCH4V	TGCA	3 cut(s)	20, 371, 719
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 257, 266, 377, 479, 599, 800
HpyF3I	CTNAG	2 cut(s)	239, 285
HpySE526I	ACGT	2 cut(s)	225, 534
Hsp92I	GRCGYC	2 cut(s)	774, 807
Hsp92II	CATG	1 cut(s)	687
KroI	GCCGGC	1 cut(s)	803
KroNI	GCCGGC	1 cut(s)	805
Kzo9I	GATC	2 cut(s)	276, 768
LmnI	GCTCC	4 cut(s)	50, 529, 565, 812
Lsp1109I	GCAGC	6 cut(s)	10, 32, 278, 383, 429, 679
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	5 cut(s)	132, 455, 603, 698, 788
MaeII	ACGT	2 cut(s)	225, 534
MaeIII	GTNAC	4 cut(s)	3, 147, 244, 337
MalI	GATC	2 cut(s)	278, 770
MboI	GATC	2 cut(s)	276, 768
MboII	GAAGA	2 cut(s)	243, 824
MhlI	GDGCHC	2 cut(s)	387, 526
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	2 cut(s)	104, 434
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	790
Mox20I	TGGCCA	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	803
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	113, 327, 671, 738, 804
MspR9I	CCNGG	3 cut(s)	327, 401, 739
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	7 cut(s)	17, 257, 266, 377, 479, 599, 800
NaeI	GCCGGC	1 cut(s)	805
NciI	CCSGG	2 cut(s)	327, 739
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	2 cut(s)	276, 768
NgoMIV	GCCGGC	1 cut(s)	803
NlaIII	CATG	1 cut(s)	687
NlaIV	GGNNCC	2 cut(s)	65, 398
NmuCI	GTSAC	2 cut(s)	3, 147
NspI	RCATGY	1 cut(s)	687
OliI	CACNNNNGTG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	306
PctI	GAATGC	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	633, 674
PflFI	GACNNNGTC	1 cut(s)	401
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	8 cut(s)	22, 25, 268, 373, 419, 669, 755, 793
Ple19I	CGATCG	2 cut(s)	279, 771
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	65, 398
PspPI	GGNCC	2 cut(s)	332, 397
PspPPI	RGGWCCY	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	401
PvuI	CGATCG	2 cut(s)	279, 771
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	8 cut(s)	21, 24, 267, 372, 418, 668, 754, 792
Sau3AI	GATC	2 cut(s)	276, 768
Sau96I	GGNCC	2 cut(s)	332, 397
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	3 cut(s)	327, 401, 739
SduI	GDGCHC	2 cut(s)	387, 526
SexAI	ACCWGGT	1 cut(s)	399
SinI	GGWCC	2 cut(s)	332, 397
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	104, 434
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	5 cut(s)	11, 712, 753, 756, 791
SspMI	CTAG	5 cut(s)	132, 455, 603, 698, 788
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	325, 399, 737
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	629
TaiI	ACGT	2 cut(s)	228, 537
TaqI	TCGA	4 cut(s)	71, 275, 279, 531
TasI	AATT	2 cut(s)	104, 434
TauI	GCSGC	2 cut(s)	756, 794
TfiI	GAWTC	2 cut(s)	633, 674
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	3, 147
TseI	GCWGC	6 cut(s)	20, 23, 266, 371, 417, 667
Tsp45I	GTSAC	2 cut(s)	3, 147
TspDTI	ATGAA	2 cut(s)	447, 625
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	332, 397
XagI	CCTNNNNNAGG	1 cut(s)	58
XceI	RCATGY	1 cut(s)	687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	5 cut(s)	132, 455, 603, 698, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.